Wall clock time and date at job start Tue Mar 31 2020 15:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 116.99558 * 2 1 4 4 C 1.38703 * 119.98245 * 0.28134 * 3 2 1 5 5 C 1.38109 * 120.01789 * 180.23011 * 4 3 2 6 6 C 1.38868 * 119.97842 * 359.49561 * 5 4 3 7 7 N 1.39941 * 120.01597 * 180.27551 * 6 5 4 8 8 C 1.46499 * 120.00112 * 334.99892 * 7 6 5 9 9 S 1.65600 * 119.99767 * 154.99700 * 7 6 5 10 10 O 1.42101 * 104.27697 * 206.07269 * 9 7 6 11 11 O 1.42104 * 104.27738 * 333.92567 * 9 7 6 12 12 C 1.81393 * 104.45033 * 89.99910 * 9 7 6 13 13 C 1.52998 * 109.47355 * 179.97438 * 12 9 7 14 14 C 1.53006 * 109.46850 * 300.00251 * 13 12 9 15 15 C 1.52999 * 109.47128 * 59.99542 * 13 12 9 16 16 C 1.50702 * 109.47455 * 180.02562 * 13 12 9 17 17 H 1.07998 * 119.99680 * 357.68756 * 16 13 12 18 18 C 1.37873 * 119.99709 * 177.69579 * 16 13 12 19 19 N 1.31512 * 120.00466 * 6.58060 * 18 16 13 20 20 Si 1.86801 * 119.99444 * 186.57698 * 18 16 13 21 21 H 1.48506 * 109.47303 * 84.99613 * 20 18 16 22 22 H 1.48501 * 109.47086 * 204.99321 * 20 18 16 23 23 H 1.48496 * 109.47350 * 324.99325 * 20 18 16 24 24 C 1.38856 * 119.96203 * 0.24735 * 6 5 4 25 25 C 1.38109 * 119.98290 * 0.02562 * 24 6 5 26 26 H 1.09001 * 109.47029 * 299.99548 * 1 2 3 27 27 H 1.08999 * 109.47312 * 59.99675 * 1 2 3 28 28 H 1.09004 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99075 * 359.97438 * 4 3 2 30 30 H 1.07992 * 120.01059 * 179.76705 * 5 4 3 31 31 H 1.08995 * 109.47589 * 89.99854 * 8 7 6 32 32 H 1.09003 * 109.47011 * 209.99939 * 8 7 6 33 33 H 1.09005 * 109.46667 * 329.99412 * 8 7 6 34 34 H 1.09000 * 109.46952 * 300.00048 * 12 9 7 35 35 H 1.08999 * 109.47066 * 59.99761 * 12 9 7 36 36 H 1.09000 * 109.47608 * 66.66642 * 14 13 12 37 37 H 1.08997 * 109.47203 * 186.66724 * 14 13 12 38 38 H 1.09001 * 109.46994 * 306.66518 * 14 13 12 39 39 H 1.09007 * 109.47004 * 60.00484 * 15 13 12 40 40 H 1.08999 * 109.47250 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47494 * 300.00661 * 15 13 12 42 42 H 0.97001 * 119.99911 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.00570 * 180.02562 * 24 6 5 44 44 H 1.08001 * 119.99178 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2905 2.3748 0.0059 5 6 1.9166 3.6059 0.0011 6 6 3.3034 3.6790 0.0010 7 7 3.9386 4.9259 0.0019 8 6 3.2465 6.1010 -0.5332 9 16 5.4727 5.0731 0.6080 10 8 5.5563 6.4291 1.0246 11 8 5.5826 4.0107 1.5453 12 6 6.5533 4.7777 -0.8187 13 6 8.0156 4.8882 -0.3824 14 6 8.2772 6.2892 0.1742 15 6 8.3048 3.8470 0.7007 16 6 8.9134 4.6433 -1.5678 17 1 8.4849 4.3934 -2.5271 18 6 10.2817 4.7382 -1.4274 19 7 10.8099 4.9139 -0.2360 20 14 11.3852 4.6172 -2.9298 21 1 11.5008 5.9531 -3.5681 22 1 12.7323 4.1471 -2.5179 23 1 10.7998 3.6551 -3.8977 24 6 4.0593 2.5142 0.0004 25 6 3.4315 1.2840 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2120 2.3177 0.0101 30 1 1.3280 4.5112 0.0019 31 1 2.6880 6.5889 0.2656 32 1 3.9776 6.7978 -0.9433 33 1 2.5591 5.7907 -1.3202 34 1 6.3665 3.7798 -1.2154 35 1 6.3476 5.5197 -1.5901 36 1 7.7164 6.4234 1.0991 37 1 9.3421 6.4075 0.3745 38 1 7.9597 7.0348 -0.5547 39 1 8.1183 2.8489 0.3043 40 1 9.3464 3.9260 1.0118 41 1 7.6554 4.0245 1.5580 42 1 11.7726 4.9810 -0.1373 43 1 5.1378 2.5703 0.0007 44 1 4.0193 0.3780 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565955589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:34 Heat of formation + Delta-G solvation = -91.692743 kcal Electronic energy + Delta-G solvation = -26945.807200 eV Core-core repulsion = 23183.607579 eV Total energy + Delta-G solvation = -3762.199621 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17337 -39.24051 -38.31572 -38.18155 -37.02559 -36.16662 -33.67575 -32.16498 -30.45287 -28.52218 -28.04999 -27.73330 -27.28416 -27.00059 -23.60400 -22.98843 -21.33067 -20.21968 -19.15348 -18.97531 -17.98473 -17.79804 -17.24090 -16.86821 -16.61084 -16.55355 -16.37720 -15.50339 -15.37118 -14.99505 -14.83237 -14.60107 -14.46769 -14.35611 -14.03261 -13.88722 -13.59289 -13.50761 -13.21181 -13.05179 -12.95611 -12.88378 -12.83186 -12.60734 -12.40139 -12.29547 -12.19597 -12.15586 -11.98419 -11.70583 -11.59836 -11.44681 -10.90901 -10.59699 -10.40753 -10.02602 -8.66360 -8.05396 -6.23783 -0.83928 0.30650 0.41761 1.44279 1.45889 1.53915 1.56486 2.43222 2.44441 2.63485 2.85989 3.07760 3.17359 3.49794 3.85331 3.88282 3.98694 4.03324 4.23986 4.37216 4.48638 4.50409 4.50941 4.56292 4.56927 4.67877 4.80205 4.80896 4.83179 4.84789 4.92247 4.95794 5.03034 5.04947 5.31155 5.34340 5.43378 5.45971 5.55517 5.62747 5.86667 5.94040 6.08065 6.31670 6.50595 6.80368 7.44486 8.94462 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017657 B = 0.003664 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.415817 B = 7639.789303 C = 8458.896707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.095 3.905 4 C -0.173 4.173 5 C -0.106 4.106 6 C 0.121 3.879 7 N -0.945 5.945 8 C 0.069 3.931 9 S 2.599 3.401 10 O -0.976 6.976 11 O -0.975 6.975 12 C -0.583 4.583 13 C 0.072 3.928 14 C -0.159 4.159 15 C -0.161 4.161 16 C -0.520 4.520 17 H 0.063 0.937 18 C 0.020 3.980 19 N -0.906 5.906 20 Si 0.954 3.046 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.268 1.268 24 C -0.138 4.138 25 C -0.130 4.130 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.166 0.834 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.120 0.880 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.537 -3.868 -2.777 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.049 3.951 4 C -0.192 4.192 5 C -0.128 4.128 6 C 0.026 3.974 7 N -0.772 5.772 8 C -0.074 4.074 9 S 2.699 3.301 10 O -0.966 6.966 11 O -0.965 6.965 12 C -0.716 4.716 13 C 0.070 3.930 14 C -0.217 4.217 15 C -0.219 4.219 16 C -0.559 4.559 17 H 0.082 0.918 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.780 3.220 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.193 1.193 24 C -0.160 4.160 25 C -0.149 4.149 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.184 0.816 30 H 0.177 0.823 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.138 0.862 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.091 -3.726 -1.769 22.473 hybrid contribution 1.146 -0.013 -1.064 1.564 sum -20.946 -3.739 -2.833 21.464 Atomic orbital electron populations 1.23362 0.76412 1.05534 1.02447 1.86074 1.23513 1.26431 1.89034 1.19033 0.91950 0.85243 0.98872 1.21394 1.01475 0.90633 1.05665 1.20962 0.91194 0.99349 1.01307 1.17650 0.93487 0.83319 1.02928 1.55477 1.32527 1.13444 1.75747 1.22024 0.99394 0.85117 1.00822 1.05465 0.73660 0.73569 0.77455 1.93520 1.85738 1.36349 1.81017 1.93544 1.85343 1.57339 1.60286 1.30538 1.10839 1.11982 1.18252 1.17922 0.87235 0.92776 0.95083 1.22166 1.03834 0.97565 0.98087 1.22251 1.03660 0.98670 0.97274 1.21261 0.91176 1.48149 0.95291 0.91849 1.25663 0.99358 0.94683 0.98292 1.69945 1.11852 1.49738 1.22900 0.85631 0.77950 0.78468 0.79956 1.20085 1.21289 1.19282 1.20994 1.00046 0.91887 1.03043 1.20298 0.92480 0.97699 1.04431 0.91627 0.91276 0.86593 0.81650 0.82270 0.90541 0.89812 0.87211 0.84832 0.84145 0.95382 0.90899 0.93610 0.94169 0.90646 0.95082 0.92808 0.86184 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -7.05 10.50 -93.63 -0.98 -8.04 16 3 C 0.09 2.24 6.69 22.49 0.15 2.39 16 4 C -0.17 -3.26 9.03 22.35 0.20 -3.06 16 5 C -0.11 -2.23 9.13 22.39 0.20 -2.02 16 6 C 0.12 3.41 6.05 38.15 0.23 3.64 16 7 N -0.95 -27.16 3.33 -360.66 -1.20 -28.36 16 8 C 0.07 1.41 9.20 127.77 1.18 2.58 16 9 S 2.60 98.25 3.77 -56.49 -0.21 98.04 16 10 O -0.98 -40.59 14.85 -127.65 -1.90 -42.49 16 11 O -0.97 -41.92 12.79 -127.65 -1.63 -43.55 16 12 C -0.58 -22.56 4.98 71.98 0.36 -22.20 16 13 C 0.07 3.48 0.52 -52.93 -0.03 3.46 16 14 C -0.16 -7.84 7.58 71.98 0.55 -7.30 16 15 C -0.16 -8.06 7.80 71.98 0.56 -7.50 16 16 C -0.52 -27.05 8.01 25.60 0.20 -26.85 16 17 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 18 C 0.02 1.04 5.09 84.65 0.43 1.47 16 19 N -0.91 -50.05 9.39 21.45 0.20 -49.85 16 20 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 C -0.14 -4.31 8.42 22.39 0.19 -4.12 16 25 C -0.13 -3.62 9.98 22.35 0.22 -3.40 16 26 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 27 H 0.07 0.55 7.67 -2.39 -0.02 0.53 16 28 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.17 1.85 6.29 -2.91 -0.02 1.84 16 30 H 0.16 2.29 7.13 -2.91 -0.02 2.27 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.66 7.79 -2.39 -0.02 1.64 16 33 H 0.11 1.48 7.47 -2.38 -0.02 1.46 16 34 H 0.13 4.76 7.18 -2.39 -0.02 4.75 16 35 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 36 H 0.03 1.33 5.96 -2.39 -0.01 1.31 16 37 H 0.07 3.92 5.99 -2.39 -0.01 3.91 16 38 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.07 4.12 6.01 -2.39 -0.01 4.11 16 41 H 0.03 1.49 5.46 -2.39 -0.01 1.47 16 42 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 43 H 0.12 4.10 5.13 -2.91 -0.01 4.08 16 44 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -69.90 352.32 2.87 -67.03 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 1.01 Total: 24.83 kcal Atomic # 6 Polarization: -67.18 SS G_CDS: 5.56 Total: -61.62 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -1.00 Total: -78.21 kcal Atomic # 8 Polarization: -89.56 SS G_CDS: -4.51 Total: -94.08 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 98.25 SS G_CDS: -0.21 Total: 98.04 kcal Total: -69.90 2.87 -67.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565955589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.665 kcal (2) G-P(sol) polarization free energy of solvation -69.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds