Wall clock time and date at job start Tue Mar 31 2020 15:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 H 1.08997 * 109.46989 * 175.22326 * 3 2 1 5 5 C 1.50697 * 109.47320 * 55.22119 * 3 2 1 6 6 H 1.08000 * 120.00247 * 245.72520 * 5 3 2 7 7 C 1.37881 * 119.99913 * 65.72420 * 5 3 2 8 8 N 1.31508 * 119.99833 * 5.51527 * 7 5 3 9 9 Si 1.86801 * 119.99965 * 185.51670 * 7 5 3 10 10 H 1.48504 * 109.47086 * 179.97438 * 9 7 5 11 11 H 1.48496 * 109.47017 * 300.00093 * 9 7 5 12 12 H 1.48502 * 109.47182 * 60.00206 * 9 7 5 13 13 N 1.46903 * 109.46867 * 295.22510 * 3 2 1 14 14 C 1.46905 * 110.99445 * 279.79527 * 13 3 2 15 15 C 1.53010 * 109.46886 * 184.98064 * 14 13 3 16 16 O 1.42895 * 109.47114 * 64.99806 * 15 14 13 17 17 C 1.35900 * 116.99705 * 180.02562 * 16 15 14 18 18 C 1.38725 * 120.05767 * 359.72836 * 17 16 15 19 19 C 1.38144 * 119.94385 * 179.74434 * 18 17 16 20 20 C 1.38263 * 120.05733 * 0.50742 * 19 18 17 21 21 S 1.76200 * 119.94697 * 179.74571 * 20 19 18 22 22 C 1.81403 * 104.44803 * 270.02256 * 21 20 19 23 23 O 1.42101 * 104.27708 * 26.09224 * 21 20 19 24 24 O 1.42100 * 104.27794 * 153.95213 * 21 20 19 25 25 C 1.38266 * 120.11085 * 359.76620 * 20 19 18 26 26 C 1.38150 * 120.05554 * 359.97438 * 25 20 19 27 27 H 1.09001 * 109.46923 * 64.94609 * 1 2 3 28 28 H 1.08999 * 109.47285 * 184.95108 * 1 2 3 29 29 H 1.09002 * 109.46960 * 304.94954 * 1 2 3 30 30 H 1.08995 * 109.47200 * 240.00149 * 2 1 3 31 31 H 1.08995 * 109.46933 * 119.99806 * 2 1 3 32 32 H 0.96999 * 120.00238 * 355.15072 * 8 7 5 33 33 H 1.00901 * 111.00017 * 155.84838 * 13 3 2 34 34 H 1.09000 * 109.47276 * 304.97760 * 14 13 3 35 35 H 1.08999 * 109.47126 * 64.98116 * 14 13 3 36 36 H 1.08996 * 109.47012 * 184.99950 * 15 14 13 37 37 H 1.09003 * 109.46414 * 305.00184 * 15 14 13 38 38 H 1.07997 * 120.03026 * 359.97438 * 18 17 16 39 39 H 1.08010 * 119.97199 * 180.23002 * 19 18 17 40 40 H 1.08995 * 109.47253 * 59.99956 * 22 21 20 41 41 H 1.08999 * 109.46785 * 180.02562 * 22 21 20 42 42 H 1.09002 * 109.47128 * 299.99684 * 22 21 20 43 43 H 1.07998 * 119.97280 * 179.97438 * 25 20 19 44 44 H 1.07998 * 120.02851 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 0.0856 5 6 1.4434 2.1863 1.1670 6 1 0.7591 3.0037 0.9935 7 6 1.7711 1.8233 2.4561 8 7 2.6853 0.9019 2.6675 9 14 0.9165 2.6403 3.9024 10 1 1.4437 2.0772 5.1714 11 1 1.1710 4.1029 3.8658 12 1 -0.5449 2.3899 3.8197 13 7 1.6467 2.1009 -1.2530 14 6 2.5540 1.7329 -2.3482 15 6 2.1897 2.5306 -3.6021 16 8 2.4246 3.9205 -3.3673 17 6 2.1493 4.7737 -4.3886 18 6 1.6684 4.2829 -5.5937 19 6 1.3844 5.1529 -6.6285 20 6 1.5889 6.5108 -6.4675 21 16 1.2319 7.6172 -7.7915 22 6 2.7845 7.7234 -8.7237 23 8 0.2385 6.9440 -8.5526 24 8 0.9504 8.8531 -7.1493 25 6 2.0734 7.0020 -5.2693 26 6 2.3540 6.1367 -4.2295 27 1 -0.3633 0.4352 -0.9310 28 1 -0.3634 -1.0238 0.0887 29 1 -0.3633 0.5887 0.8424 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0784 0.4277 1.9181 33 1 1.6064 3.1025 -1.1380 34 1 3.5810 1.9575 -2.0604 35 1 2.4596 0.6670 -2.5556 36 1 2.8035 2.1944 -4.4376 37 1 1.1370 2.3749 -3.8385 38 1 1.5128 3.2219 -5.7216 39 1 1.0065 4.7716 -7.5657 40 1 3.0602 6.7325 -9.0844 41 1 2.6540 8.3959 -9.5715 42 1 3.5724 8.1060 -8.0748 43 1 2.2327 8.0631 -5.1460 44 1 2.7328 6.5208 -3.2940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566429121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:01 Heat of formation + Delta-G solvation = -86.999159 kcal Electronic energy + Delta-G solvation = -25131.863125 eV Core-core repulsion = 21369.867034 eV Total energy + Delta-G solvation = -3761.996092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41976 -37.95468 -37.38837 -36.50480 -36.20894 -33.25754 -31.49456 -31.06140 -30.45462 -29.82087 -28.52224 -25.36634 -23.60755 -23.42255 -23.19040 -21.45752 -19.36219 -19.30519 -18.68377 -17.66341 -17.09987 -16.52047 -16.47857 -16.05417 -15.62476 -15.03934 -14.61080 -14.27093 -14.07826 -13.91921 -13.77737 -13.69638 -13.60797 -13.50886 -13.17060 -12.90953 -12.42393 -12.37210 -12.28214 -12.18126 -11.83733 -11.48976 -11.44312 -11.24285 -11.07333 -11.00134 -10.92240 -10.78580 -10.17211 -10.11173 -9.94232 -9.77707 -9.40749 -8.77724 -8.55847 -8.33949 -7.48767 -6.37164 -4.09213 -0.25010 0.67143 0.99807 2.57399 2.98473 3.15855 3.42450 3.44349 3.62471 3.64875 3.78663 4.35065 4.36220 4.48199 4.48558 4.59363 4.79639 4.87928 4.98498 5.15874 5.19546 5.22518 5.27277 5.35378 5.52146 5.59584 5.64979 5.81245 5.92849 5.97729 6.05433 6.25948 6.34973 6.38885 6.55415 6.88203 6.99052 7.14878 7.19553 7.38826 7.52211 7.80852 8.04733 8.45517 8.53700 8.84418 9.61385 10.99459 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022155 B = 0.002220 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.513656 B =12608.421549 C =13227.724954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C 0.203 3.797 4 H -0.008 1.008 5 C -0.590 4.590 6 H 0.054 0.946 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.678 5.678 14 C 0.059 3.941 15 C 0.058 3.942 16 O -0.301 6.301 17 C 0.196 3.804 18 C -0.232 4.232 19 C 0.017 3.983 20 C -0.707 4.707 21 S 2.507 3.493 22 C -0.652 4.652 23 O -0.942 6.942 24 O -0.941 6.941 25 C 0.014 3.986 26 C -0.174 4.174 27 H 0.044 0.956 28 H 0.017 0.983 29 H 0.064 0.936 30 H 0.019 0.981 31 H 0.058 0.942 32 H 0.270 0.730 33 H 0.341 0.659 34 H 0.031 0.969 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.146 0.854 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.371 9.785 -23.054 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.095 3.905 4 H 0.009 0.991 5 C -0.629 4.629 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.310 5.310 14 C -0.071 4.071 15 C -0.017 4.017 16 O -0.213 6.213 17 C 0.148 3.852 18 C -0.252 4.252 19 C -0.002 4.002 20 C -0.795 4.795 21 S 2.687 3.313 22 C -0.801 4.801 23 O -0.939 6.939 24 O -0.938 6.938 25 C -0.005 4.005 26 C -0.194 4.194 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.083 0.917 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.159 0.841 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.164 0.836 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.187 9.795 -21.501 23.657 hybrid contribution 1.535 -0.375 -1.328 2.063 sum 2.722 9.420 -22.829 24.845 Atomic orbital electron populations 1.21459 0.96365 0.97914 1.02054 1.21535 0.96500 0.98282 0.98325 1.19283 0.93177 0.91638 0.86407 0.99068 1.21899 1.30601 1.18695 0.91690 0.92786 1.25715 0.95489 0.96905 1.00101 1.70804 1.24225 1.24135 1.35700 0.83575 0.75722 0.75510 0.75722 1.20868 1.21523 1.21341 1.60682 1.49876 1.14125 1.06363 1.22023 0.95729 0.98364 0.90976 1.23194 1.01623 0.77413 0.99503 1.86181 1.79790 1.18634 1.36682 1.19413 0.88658 0.90598 0.86506 1.21417 1.08439 1.01233 0.94114 1.20684 0.90080 0.90870 0.98590 1.30237 1.22625 1.09909 1.16747 1.04866 0.76828 0.74448 0.75132 1.30248 1.22867 1.11846 1.15175 1.93577 1.53999 1.74906 1.71439 1.93581 1.82978 1.42910 1.74320 1.20714 0.89713 0.99897 0.90203 1.20634 1.07186 0.90264 1.01297 0.93688 0.96362 0.91710 0.96228 0.92312 0.91787 0.84081 0.95051 0.89636 0.91817 0.90666 0.84397 0.84033 0.85084 0.85211 0.85006 0.83596 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.53 37.16 0.35 -2.26 16 2 C -0.11 -2.46 5.47 -26.73 -0.15 -2.61 16 3 C 0.20 4.90 1.92 -68.86 -0.13 4.77 16 4 H -0.01 -0.22 7.31 -51.93 -0.38 -0.60 16 5 C -0.59 -15.88 6.92 -34.44 -0.24 -16.11 16 6 H 0.05 1.47 7.75 -52.49 -0.41 1.07 16 7 C 0.02 0.62 5.28 -17.82 -0.09 0.53 16 8 N -0.91 -26.69 13.20 55.43 0.73 -25.96 16 9 Si 1.07 24.82 29.91 -169.99 -5.08 19.74 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -13.80 5.86 -107.94 -0.63 -14.43 16 14 C 0.06 0.96 5.93 -3.82 -0.02 0.94 16 15 C 0.06 0.74 5.06 37.16 0.19 0.93 16 16 O -0.30 -4.32 9.59 -19.43 -0.19 -4.51 16 17 C 0.20 2.46 6.69 -39.22 -0.26 2.20 16 18 C -0.23 -2.48 9.04 -39.44 -0.36 -2.84 16 19 C 0.02 0.16 9.46 -39.61 -0.37 -0.21 16 20 C -0.71 -6.54 5.66 -39.56 -0.22 -6.77 16 21 S 2.51 19.16 5.80 -107.50 -0.62 18.54 16 22 C -0.65 -2.18 10.80 101.05 1.09 -1.09 16 23 O -0.94 -10.21 17.12 -57.54 -0.99 -11.19 16 24 O -0.94 -10.27 17.12 -57.54 -0.99 -11.25 16 25 C 0.01 0.13 9.46 -39.60 -0.37 -0.24 16 26 C -0.17 -1.99 9.99 -39.43 -0.39 -2.39 16 27 H 0.04 0.93 7.89 -51.93 -0.41 0.52 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 1.55 6.89 -51.93 -0.36 1.19 16 30 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 31 H 0.06 1.47 6.18 -51.93 -0.32 1.15 16 32 H 0.27 7.85 5.62 -40.82 -0.23 7.62 16 33 H 0.34 7.19 7.82 -39.29 -0.31 6.88 16 34 H 0.03 0.54 7.95 -51.93 -0.41 0.13 16 35 H 0.09 1.32 7.20 -51.93 -0.37 0.95 16 36 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 37 H 0.08 0.95 7.67 -51.93 -0.40 0.55 16 38 H 0.14 1.24 6.30 -52.49 -0.33 0.91 16 39 H 0.14 1.04 7.57 -52.48 -0.40 0.65 16 40 H 0.13 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 42 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 43 H 0.15 1.11 7.57 -52.49 -0.40 0.71 16 44 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -34.89 370.26 -9.57 -44.46 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.40 Total: 4.18 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -0.99 Total: -25.16 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.10 Total: -40.39 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -2.16 Total: -26.95 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.74 kcal Atomic # 16 Polarization: 19.16 SS G_CDS: -0.62 Total: 18.54 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.89 -9.57 -44.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.543 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds