Wall clock time and date at job start Tue Mar 31 2020 15:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47111 * 2 1 4 4 C 1.50701 * 109.46816 * 239.99869 * 2 1 3 5 5 H 1.08006 * 119.99960 * 240.00165 * 4 2 1 6 6 C 1.37876 * 120.00421 * 60.00232 * 4 2 1 7 7 N 1.31521 * 119.99315 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00386 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47011 * 59.99716 * 8 6 4 10 10 H 1.48492 * 109.47084 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46798 * 299.99933 * 8 6 4 12 12 C 1.53005 * 109.46757 * 120.00244 * 2 1 3 13 13 S 1.81401 * 109.46716 * 299.99480 * 12 2 1 14 14 O 1.42094 * 110.54285 * 68.38008 * 13 12 2 15 15 O 1.42100 * 110.54700 * 291.62760 * 13 12 2 16 16 N 1.65599 * 104.44634 * 180.02562 * 13 12 2 17 17 C 1.46499 * 120.00089 * 65.00253 * 16 13 12 18 18 C 1.50699 * 109.47102 * 165.00209 * 17 16 13 19 19 C 1.38258 * 119.99734 * 260.01749 * 18 17 16 20 20 C 1.38213 * 120.00082 * 179.97438 * 19 18 17 21 21 C 1.38263 * 119.99986 * 0.02562 * 20 19 18 22 22 C 1.38215 * 119.99577 * 359.70149 * 21 20 19 23 23 C 1.38209 * 120.00423 * 79.99836 * 18 17 16 24 24 C 1.50701 * 119.99797 * 0.02562 * 23 18 17 25 25 O 1.42903 * 109.46878 * 179.97438 * 24 23 18 26 26 H 1.09000 * 109.46845 * 300.00303 * 1 2 3 27 27 H 1.09004 * 109.46661 * 60.00156 * 1 2 3 28 28 H 1.08994 * 109.47105 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46573 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47231 * 299.99495 * 3 2 1 31 31 H 1.09000 * 109.47514 * 60.00107 * 3 2 1 32 32 H 0.97003 * 119.99474 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.46489 * 179.97438 * 12 2 1 34 34 H 1.08996 * 109.47002 * 59.99718 * 12 2 1 35 35 H 0.97001 * 120.00230 * 245.00390 * 16 13 12 36 36 H 1.09000 * 109.47273 * 44.99859 * 17 16 13 37 37 H 1.09002 * 109.47004 * 284.99704 * 17 16 13 38 38 H 1.08002 * 120.00011 * 0.02562 * 19 18 17 39 39 H 1.07994 * 120.00169 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.99986 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99524 * 180.29857 * 22 21 20 42 42 H 1.09002 * 109.47060 * 299.99979 * 24 23 18 43 43 H 1.09001 * 109.47380 * 60.00066 * 24 23 18 44 44 H 0.96700 * 113.99509 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0080 9 1 1.8280 -2.5200 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1191 -4.0077 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0182 2.8543 15 8 2.0480 1.4101 2.8544 16 7 2.0540 -0.7400 3.9936 17 6 3.5025 -0.7964 4.2054 18 6 3.7879 -1.3243 5.5878 19 6 4.1033 -0.4490 6.6105 20 6 4.3645 -0.9330 7.8785 21 6 4.3108 -2.2926 8.1241 22 6 3.9899 -3.1671 7.1030 23 6 3.7338 -2.6833 5.8334 24 6 3.3901 -3.6374 4.7187 25 8 3.3987 -4.9763 5.2181 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8900 32 1 0.7082 1.1608 -3.4844 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 1.4574 -1.2146 4.5933 36 1 3.9238 0.2038 4.1043 37 1 3.9527 -1.4569 3.4643 38 1 4.1448 0.6131 6.4187 39 1 4.6105 -0.2493 8.6774 40 1 4.5153 -2.6708 9.1148 41 1 3.9433 -4.2287 7.2960 42 1 2.3997 -3.4004 4.3301 43 1 4.1259 -3.5432 3.9200 44 1 3.1851 -5.6453 4.5533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567123742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:11 Heat of formation + Delta-G solvation = -102.374248 kcal Electronic energy + Delta-G solvation = -26483.349128 eV Core-core repulsion = 22720.686322 eV Total energy + Delta-G solvation = -3762.662806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.93743 -36.85590 -36.58895 -36.30708 -35.50948 -35.24333 -31.76076 -31.68881 -31.07368 -26.72379 -26.54331 -25.74359 -25.51843 -25.23125 -22.17122 -21.02484 -19.66243 -18.81989 -17.72320 -17.46045 -16.82909 -16.10561 -15.92199 -15.50433 -15.21720 -15.08475 -14.97953 -14.74125 -14.46422 -13.97580 -13.54263 -13.31704 -13.03677 -12.85539 -12.65720 -12.53295 -12.38040 -12.10660 -11.86018 -11.47026 -11.22393 -11.17584 -11.07992 -10.99957 -10.90585 -10.73438 -10.59532 -10.43306 -10.30156 -10.14602 -9.69416 -9.67398 -9.31022 -9.02321 -8.84025 -8.70455 -8.42793 -6.06277 -4.18678 0.73567 1.12124 1.22834 3.16363 3.24378 3.30407 3.31399 3.62079 3.88819 4.25071 4.34799 4.47428 4.60738 4.74947 4.81523 4.88767 5.04589 5.15725 5.18874 5.20448 5.27946 5.36722 5.57842 5.59614 5.65014 5.77463 5.86104 5.92705 6.25654 6.32958 6.33229 6.41916 6.66816 6.76751 6.78816 6.87732 6.98576 7.07564 7.28596 7.33541 7.47452 7.64626 7.95456 8.06331 8.29756 8.79480 9.46873 10.94973 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.003387 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.745711 B = 8265.217688 C = 9075.454311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.593 3.407 14 O -0.963 6.963 15 O -0.963 6.963 16 N -1.127 6.127 17 C 0.153 3.847 18 C -0.091 4.091 19 C -0.100 4.100 20 C -0.123 4.123 21 C -0.119 4.119 22 C -0.100 4.100 23 C -0.077 4.077 24 C 0.110 3.890 25 O -0.572 6.572 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.412 0.588 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.596 -7.443 16.879 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.716 4.716 13 S 2.691 3.309 14 O -0.953 6.953 15 O -0.953 6.953 16 N -0.884 5.884 17 C 0.027 3.973 18 C -0.092 4.092 19 C -0.119 4.119 20 C -0.141 4.141 21 C -0.137 4.137 22 C -0.118 4.118 23 C -0.078 4.078 24 C 0.033 3.967 25 O -0.378 6.378 26 H 0.046 0.954 27 H 0.114 0.886 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.245 0.755 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.247 -6.113 17.270 19.356 hybrid contribution 0.369 -1.518 -1.364 2.074 sum 6.616 -7.631 15.906 18.842 Atomic orbital electron populations 1.22278 0.96911 1.00628 1.02349 1.17924 0.92826 0.92218 0.88998 1.22276 0.99708 0.97790 1.02382 1.20896 1.31868 1.12122 0.89415 0.92380 1.24940 0.94870 0.94973 0.98932 1.69795 1.36145 1.22541 1.23623 0.86594 0.79144 0.79692 0.82167 1.20288 1.21176 1.20270 1.30534 1.11227 1.12868 1.16962 1.05662 0.74420 0.75274 0.75566 1.93559 1.29419 1.86630 1.85731 1.93539 1.78106 1.38135 1.85476 1.55953 1.13435 1.71377 1.47644 1.20178 0.81133 1.02300 0.93680 1.19564 1.01661 0.92436 0.95584 1.21113 0.98587 0.99782 0.92430 1.21181 1.00419 0.95627 0.96883 1.21224 0.99834 0.93506 0.99165 1.20990 0.98379 1.00485 0.91930 1.19603 1.00243 0.92734 0.95179 1.20994 1.00689 0.81330 0.93682 1.86389 1.94029 1.16106 1.41241 0.95372 0.88631 0.94483 0.94465 0.88660 0.95301 0.92655 0.86446 0.86295 0.75495 0.89090 0.90925 0.85312 0.85897 0.86034 0.84981 0.91570 0.91709 0.76758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.78 37.16 0.29 -3.68 16 2 C 0.08 1.95 0.52 -155.65 -0.08 1.87 16 3 C -0.16 -3.95 7.78 37.16 0.29 -3.66 16 4 C -0.50 -12.91 8.01 -34.44 -0.28 -13.19 16 5 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 6 C 0.06 1.70 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -23.80 9.35 55.43 0.52 -23.28 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 C -0.58 -10.76 5.01 37.16 0.19 -10.58 16 13 S 2.59 46.17 4.49 -107.50 -0.48 45.69 16 14 O -0.96 -19.79 15.70 -57.54 -0.90 -20.69 16 15 O -0.96 -19.57 15.12 -57.54 -0.87 -20.44 16 16 N -1.13 -14.80 5.68 -11.66 -0.07 -14.86 16 17 C 0.15 1.76 5.67 -5.19 -0.03 1.73 16 18 C -0.09 -1.00 5.28 -104.63 -0.55 -1.55 16 19 C -0.10 -1.04 9.67 -39.58 -0.38 -1.43 16 20 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 21 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 22 C -0.10 -1.04 9.38 -39.58 -0.37 -1.41 16 23 C -0.08 -0.83 5.88 -104.63 -0.62 -1.44 16 24 C 0.11 1.04 6.28 36.01 0.23 1.26 16 25 O -0.57 -5.07 12.14 -35.23 -0.43 -5.50 16 26 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 27 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 31 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 32 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 33 H 0.12 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 35 H 0.41 4.86 8.59 -34.47 -0.30 4.57 16 36 H 0.09 1.06 7.56 -51.93 -0.39 0.67 16 37 H 0.07 0.70 7.06 -51.93 -0.37 0.34 16 38 H 0.13 1.21 8.04 -52.49 -0.42 0.79 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.33 7.01 -52.48 -0.37 0.96 16 42 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 43 H 0.06 0.55 7.55 -51.93 -0.39 0.15 16 44 H 0.38 1.80 9.12 45.56 0.42 2.21 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -32.84 360.46 -9.53 -42.37 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -5.51 Total: 9.53 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -2.20 Total: -33.51 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.45 Total: -38.14 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -2.20 Total: -46.63 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 46.17 SS G_CDS: -0.48 Total: 45.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.84 -9.53 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567123742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.000 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds