Wall clock time and date at job start Tue Mar 31 2020 15:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.47111 * 2 1 4 4 C 1.50701 * 109.46816 * 239.99869 * 2 1 3 5 5 H 1.08006 * 119.99960 * 240.00165 * 4 2 1 6 6 C 1.37876 * 120.00421 * 60.00232 * 4 2 1 7 7 N 1.31521 * 119.99315 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00386 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47011 * 59.99716 * 8 6 4 10 10 H 1.48492 * 109.47084 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46798 * 299.99933 * 8 6 4 12 12 C 1.53005 * 109.46757 * 120.00244 * 2 1 3 13 13 S 1.81401 * 109.46716 * 299.99480 * 12 2 1 14 14 O 1.42094 * 110.54285 * 68.38008 * 13 12 2 15 15 O 1.42100 * 110.54700 * 291.62760 * 13 12 2 16 16 N 1.65599 * 104.44634 * 180.02562 * 13 12 2 17 17 C 1.46499 * 120.00089 * 65.00253 * 16 13 12 18 18 C 1.50699 * 109.47102 * 165.00209 * 17 16 13 19 19 C 1.38258 * 119.99734 * 260.01749 * 18 17 16 20 20 C 1.38213 * 120.00082 * 179.97438 * 19 18 17 21 21 C 1.38263 * 119.99986 * 0.02562 * 20 19 18 22 22 C 1.38215 * 119.99577 * 359.70149 * 21 20 19 23 23 C 1.38209 * 120.00423 * 79.99836 * 18 17 16 24 24 C 1.50701 * 119.99797 * 0.02562 * 23 18 17 25 25 O 1.42903 * 109.46878 * 179.97438 * 24 23 18 26 26 H 1.09000 * 109.46845 * 300.00303 * 1 2 3 27 27 H 1.09004 * 109.46661 * 60.00156 * 1 2 3 28 28 H 1.08994 * 109.47105 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46573 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47231 * 299.99495 * 3 2 1 31 31 H 1.09000 * 109.47514 * 60.00107 * 3 2 1 32 32 H 0.97003 * 119.99474 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.46489 * 179.97438 * 12 2 1 34 34 H 1.08996 * 109.47002 * 59.99718 * 12 2 1 35 35 H 0.97001 * 120.00230 * 245.00390 * 16 13 12 36 36 H 1.09000 * 109.47273 * 44.99859 * 17 16 13 37 37 H 1.09002 * 109.47004 * 284.99704 * 17 16 13 38 38 H 1.08002 * 120.00011 * 0.02562 * 19 18 17 39 39 H 1.07994 * 120.00169 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.99986 * 179.97438 * 21 20 19 41 41 H 1.08004 * 119.99524 * 180.29857 * 22 21 20 42 42 H 1.09002 * 109.47060 * 299.99979 * 24 23 18 43 43 H 1.09001 * 109.47380 * 60.00066 * 24 23 18 44 44 H 0.96700 * 113.99509 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0080 9 1 1.8280 -2.5200 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1191 -4.0077 12 6 2.0400 -0.7213 1.2493 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0182 2.8543 15 8 2.0480 1.4101 2.8544 16 7 2.0540 -0.7400 3.9936 17 6 3.5025 -0.7964 4.2054 18 6 3.7879 -1.3243 5.5878 19 6 4.1033 -0.4490 6.6105 20 6 4.3645 -0.9330 7.8785 21 6 4.3108 -2.2926 8.1241 22 6 3.9899 -3.1671 7.1030 23 6 3.7338 -2.6833 5.8334 24 6 3.3901 -3.6374 4.7187 25 8 3.3987 -4.9763 5.2181 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8900 32 1 0.7082 1.1608 -3.4844 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7489 1.2492 35 1 1.4574 -1.2146 4.5933 36 1 3.9238 0.2038 4.1043 37 1 3.9527 -1.4569 3.4643 38 1 4.1448 0.6131 6.4187 39 1 4.6105 -0.2493 8.6774 40 1 4.5153 -2.6708 9.1148 41 1 3.9433 -4.2287 7.2960 42 1 2.3997 -3.4004 4.3301 43 1 4.1259 -3.5432 3.9200 44 1 3.1851 -5.6453 4.5533 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567123742.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:10 Heat of formation + Delta-G solvation = -126.100847 kcal Electronic energy + Delta-G solvation = -26484.377991 eV Core-core repulsion = 22720.686322 eV Total energy + Delta-G solvation = -3763.691668 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.68035 -38.11900 -38.09822 -37.49772 -36.90211 -36.37213 -33.61580 -32.49941 -31.89937 -28.30799 -27.67122 -27.35873 -27.21543 -26.30708 -22.93593 -21.77977 -21.36863 -20.25534 -18.85080 -18.34682 -17.96868 -17.66808 -17.04146 -16.90834 -16.61713 -16.03526 -15.99693 -15.85441 -15.48204 -14.98980 -14.68857 -14.64376 -14.40436 -14.36960 -13.95073 -13.78094 -13.48264 -13.28258 -13.06829 -12.98490 -12.84755 -12.81447 -12.74896 -12.48028 -12.16651 -12.14898 -11.97572 -11.91250 -11.71949 -11.54195 -11.38099 -11.22259 -10.69593 -10.39436 -10.33034 -9.78473 -9.55770 -8.01351 -6.20004 -0.63450 0.32775 0.46613 1.46755 1.47373 1.54218 1.94425 2.45555 2.82825 2.87817 3.21116 3.28362 3.34182 3.67301 3.89311 4.02071 4.09883 4.17957 4.21920 4.32245 4.41039 4.48083 4.55363 4.62233 4.66717 4.82445 4.84326 4.88832 4.90757 5.01702 5.05607 5.10847 5.16610 5.41051 5.52529 5.54390 5.60920 5.66344 5.66645 5.99524 6.04237 6.07433 6.13680 6.35673 6.85096 6.89160 7.48466 8.98228 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.003387 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.745711 B = 8265.217688 C = 9075.454311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.069 3.931 3 C -0.160 4.160 4 C -0.516 4.516 5 H 0.066 0.934 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.290 1.290 11 H -0.271 1.271 12 C -0.584 4.584 13 S 2.613 3.387 14 O -0.993 6.993 15 O -0.990 6.990 16 N -1.110 6.110 17 C 0.146 3.854 18 C -0.101 4.101 19 C -0.113 4.113 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.087 4.087 24 C 0.107 3.893 25 O -0.584 6.584 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.420 0.580 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.890 -8.985 17.991 21.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.067 3.933 3 C -0.218 4.218 4 C -0.555 4.555 5 H 0.084 0.916 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.216 1.216 11 H -0.196 1.196 12 C -0.717 4.717 13 S 2.711 3.289 14 O -0.984 6.984 15 O -0.980 6.980 16 N -0.870 5.870 17 C 0.021 3.979 18 C -0.103 4.103 19 C -0.132 4.132 20 C -0.145 4.145 21 C -0.137 4.137 22 C -0.132 4.132 23 C -0.087 4.087 24 C 0.030 3.970 25 O -0.393 6.393 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.256 0.744 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.152 0.848 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.538 -7.674 18.375 21.292 hybrid contribution -0.005 -1.068 -1.606 1.929 sum 7.533 -8.742 16.769 20.356 Atomic orbital electron populations 1.22218 0.97921 1.00490 1.01246 1.17914 0.92211 0.92156 0.90975 1.22209 0.99922 0.98405 1.01280 1.21286 1.31631 1.12337 0.90295 0.91567 1.25682 0.95216 0.95642 1.01701 1.69949 1.37198 1.23758 1.23839 0.85682 0.78773 0.78724 0.78850 1.19663 1.21629 1.19628 1.30447 1.12816 1.13476 1.14978 1.04766 0.73451 0.74888 0.75816 1.93511 1.31535 1.87037 1.86275 1.93501 1.78408 1.40085 1.85978 1.55476 1.14580 1.70832 1.46139 1.20408 0.79677 1.02891 0.94969 1.19518 1.02777 0.92696 0.95316 1.21341 0.98708 1.00156 0.92961 1.21462 0.99823 0.96127 0.97061 1.21530 0.98724 0.93455 0.99962 1.21140 0.98962 1.00800 0.92284 1.19815 1.00141 0.92952 0.95836 1.21034 1.01097 0.81412 0.93457 1.86351 1.94137 1.16377 1.42438 0.95016 0.91181 0.94056 0.93923 0.91251 0.94901 0.93011 0.84073 0.84082 0.74418 0.89341 0.88753 0.84845 0.83747 0.83842 0.84970 0.91293 0.90693 0.74815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 7.78 71.99 0.56 -7.27 16 2 C 0.07 3.23 0.52 -52.92 -0.03 3.20 16 3 C -0.16 -7.75 7.78 71.98 0.56 -7.19 16 4 C -0.52 -25.95 8.01 25.60 0.21 -25.75 16 5 H 0.07 3.14 7.74 -2.91 -0.02 3.12 16 6 C 0.02 0.88 5.15 84.65 0.44 1.32 16 7 N -0.91 -49.72 9.35 21.45 0.20 -49.52 16 8 Si 0.95 41.18 29.54 68.60 2.03 43.21 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 12 C -0.58 -20.43 5.01 71.98 0.36 -20.07 16 13 S 2.61 89.74 4.49 -56.49 -0.25 89.49 16 14 O -0.99 -40.08 15.70 -127.65 -2.00 -42.08 16 15 O -0.99 -39.44 15.12 -127.65 -1.93 -41.37 16 16 N -1.11 -27.04 5.68 -190.79 -1.08 -28.12 16 17 C 0.15 3.04 5.67 85.63 0.49 3.53 16 18 C -0.10 -2.04 5.28 -19.87 -0.10 -2.15 16 19 C -0.11 -2.16 9.67 22.27 0.22 -1.94 16 20 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 21 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 22 C -0.11 -2.17 9.38 22.27 0.21 -1.96 16 23 C -0.09 -1.71 5.88 -19.87 -0.12 -1.82 16 24 C 0.11 1.78 6.28 71.24 0.45 2.23 16 25 O -0.58 -9.24 12.14 -148.98 -1.81 -11.05 16 26 H 0.03 1.48 5.46 -2.39 -0.01 1.46 16 27 H 0.07 3.75 6.07 -2.38 -0.01 3.74 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 3.70 6.07 -2.38 -0.01 3.69 16 31 H 0.03 1.52 5.46 -2.39 -0.01 1.50 16 32 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.14 4.21 8.14 -2.39 -0.02 4.20 16 34 H 0.14 4.27 8.14 -2.39 -0.02 4.25 16 35 H 0.42 9.15 8.59 -96.74 -0.83 8.32 16 36 H 0.09 1.91 7.56 -2.39 -0.02 1.89 16 37 H 0.09 1.56 7.06 -2.39 -0.02 1.54 16 38 H 0.13 2.33 8.04 -2.91 -0.02 2.31 16 39 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 40 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 41 H 0.13 2.46 7.01 -2.91 -0.02 2.44 16 42 H 0.07 1.08 7.92 -2.39 -0.02 1.07 16 43 H 0.08 1.07 7.55 -2.39 -0.02 1.05 16 44 H 0.40 2.94 9.12 -74.06 -0.68 2.26 16 Total: -1.00 -69.65 360.46 -1.65 -71.30 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -0.47 Total: 29.58 kcal Atomic # 6 Polarization: -65.12 SS G_CDS: 3.68 Total: -61.44 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -0.88 Total: -77.64 kcal Atomic # 8 Polarization: -88.76 SS G_CDS: -5.74 Total: -94.50 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 89.74 SS G_CDS: -0.25 Total: 89.49 kcal Total: -69.65 -1.65 -71.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567123742.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.798 kcal (2) G-P(sol) polarization free energy of solvation -69.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds