Wall clock time and date at job start Tue Mar 31 2020 15:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47102 * 2 1 4 4 H 1.08993 * 109.47989 * 305.19356 * 3 2 1 5 5 C 1.50708 * 109.47138 * 185.18903 * 3 2 1 6 6 H 1.07996 * 120.00058 * 240.00489 * 5 3 2 7 7 C 1.37879 * 119.99597 * 60.00360 * 5 3 2 8 8 N 1.31517 * 120.00048 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00164 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47284 * 270.00132 * 9 7 5 11 11 H 1.48503 * 109.47220 * 30.00158 * 9 7 5 12 12 H 1.48498 * 109.47191 * 149.99990 * 9 7 5 13 13 N 1.46903 * 109.47106 * 65.19577 * 3 2 1 14 14 C 1.46897 * 110.99935 * 205.84261 * 13 3 2 15 15 C 1.53001 * 109.46884 * 174.76373 * 14 13 3 16 16 O 1.42901 * 109.46982 * 65.00288 * 15 14 13 17 17 C 1.35900 * 117.00200 * 179.97438 * 16 15 14 18 18 C 1.38751 * 120.05324 * 359.72306 * 17 16 15 19 19 C 1.38130 * 119.94055 * 179.70007 * 18 17 16 20 20 C 1.38283 * 120.05596 * 0.60037 * 19 18 17 21 21 C 1.38244 * 120.11227 * 359.67409 * 20 19 18 22 22 S 1.76195 * 119.97132 * 180.02562 * 21 20 19 23 23 C 1.81401 * 104.45048 * 270.02394 * 22 21 20 24 24 O 1.42101 * 104.27941 * 26.09925 * 22 21 20 25 25 O 1.42101 * 104.27639 * 153.95654 * 22 21 20 26 26 C 1.38162 * 120.05312 * 0.02684 * 21 20 19 27 27 H 1.08999 * 109.47047 * 54.37419 * 1 2 3 28 28 H 1.08999 * 109.47105 * 174.37763 * 1 2 3 29 29 H 1.09001 * 109.47059 * 294.37457 * 1 2 3 30 30 H 1.09011 * 109.46810 * 240.00414 * 2 1 3 31 31 H 1.08999 * 109.47271 * 120.00543 * 2 1 3 32 32 H 0.96997 * 119.99833 * 180.02562 * 8 7 5 33 33 H 1.00899 * 111.00140 * 81.88535 * 13 3 2 34 34 H 1.08998 * 109.47383 * 294.76839 * 14 13 3 35 35 H 1.08996 * 109.46990 * 54.77009 * 14 13 3 36 36 H 1.09004 * 109.47234 * 184.99860 * 15 14 13 37 37 H 1.08999 * 109.47666 * 305.00395 * 15 14 13 38 38 H 1.08003 * 120.03048 * 359.97438 * 18 17 16 39 39 H 1.08005 * 119.96946 * 180.30114 * 19 18 17 40 40 H 1.08001 * 119.94391 * 179.70369 * 20 19 18 41 41 H 1.09008 * 109.47228 * 60.00380 * 23 22 21 42 42 H 1.09005 * 109.47442 * 179.97438 * 23 22 21 43 43 H 1.08990 * 109.47287 * 300.00276 * 23 22 21 44 44 H 1.08007 * 120.02657 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6028 1.9825 -0.8397 5 6 3.5416 1.4444 -0.1285 6 1 4.1493 1.8880 0.6462 7 6 4.1394 0.8797 -1.2352 8 7 5.4498 0.8809 -1.3472 9 14 3.0883 0.1117 -2.5749 10 1 2.8684 -1.3247 -2.2691 11 1 1.7793 0.8103 -2.6386 12 1 3.7814 0.2391 -3.8820 13 7 1.6554 2.0978 1.2572 14 6 1.5566 3.5531 1.0835 15 6 1.0295 4.1860 2.3729 16 8 1.9815 3.9942 3.4213 17 6 1.6652 4.5005 4.6422 18 6 0.4657 5.1733 4.8259 19 6 0.1437 5.6816 6.0692 20 6 1.0212 5.5313 7.1273 21 6 2.2195 4.8663 6.9455 22 16 3.3345 4.6762 8.2964 23 6 4.3972 6.1442 8.2163 24 8 2.5024 4.7252 9.4473 25 8 4.0754 3.5063 7.9774 26 6 2.5434 4.3506 5.7053 27 1 -0.3633 0.5986 -0.8353 28 1 -0.3633 -1.0227 -0.1007 29 1 -0.3633 0.4241 0.9361 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.8703 0.4840 -2.1260 33 1 2.2995 1.8649 1.9982 34 1 2.5419 3.9596 0.8556 35 1 0.8733 3.7756 0.2640 36 1 0.8720 5.2531 2.2160 37 1 0.0855 3.7161 2.6490 38 1 -0.2177 5.2956 3.9985 39 1 -0.7920 6.2012 6.2139 40 1 0.7698 5.9336 8.0976 41 1 3.7860 7.0412 8.3163 42 1 5.1263 6.1097 9.0259 43 1 4.9176 6.1641 7.2588 44 1 3.4795 3.8308 5.5638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574287187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:09 Heat of formation + Delta-G solvation = -76.271108 kcal Electronic energy + Delta-G solvation = -25369.804275 eV Core-core repulsion = 21608.273386 eV Total energy + Delta-G solvation = -3761.530889 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27413 -37.81498 -37.31897 -36.36172 -36.15034 -32.89670 -31.87107 -31.59098 -30.27877 -29.78845 -28.54789 -26.33340 -23.83997 -22.82463 -22.51358 -21.33912 -19.92453 -19.38809 -18.52230 -17.07127 -16.53209 -16.47716 -16.43282 -16.19979 -15.95392 -15.48849 -15.12164 -14.27697 -14.20484 -13.82825 -13.68833 -13.56327 -13.50459 -13.24198 -12.80687 -12.65968 -12.50432 -12.30844 -12.24907 -12.15491 -11.91102 -11.71995 -11.50982 -11.37768 -11.24647 -11.11078 -10.81441 -10.79409 -10.57977 -10.25699 -9.79534 -9.61323 -9.46738 -9.23264 -8.59699 -8.42415 -7.43349 -6.13801 -4.15117 -0.22244 0.57781 1.15013 2.57933 3.18039 3.21640 3.24535 3.34245 3.36478 3.69997 3.89530 4.35142 4.43582 4.47556 4.61960 4.71223 4.82662 4.86882 5.01921 5.18792 5.20460 5.23553 5.29452 5.41443 5.57993 5.66346 5.78514 5.93539 5.99218 6.02768 6.04283 6.09113 6.24754 6.33519 6.43418 6.66054 6.71002 6.92877 7.06127 7.24047 7.34608 7.53738 7.96404 8.34632 8.46542 8.89572 9.49117 10.99135 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.002598 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.930356 B =10775.783017 C =11534.671593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.184 3.816 4 H 0.031 0.969 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.299 1.299 13 N -0.681 5.681 14 C 0.065 3.935 15 C 0.061 3.939 16 O -0.301 6.301 17 C 0.125 3.875 18 C -0.160 4.160 19 C -0.100 4.100 20 C -0.074 4.074 21 C -0.622 4.622 22 S 2.503 3.497 23 C -0.650 4.650 24 O -0.939 6.939 25 O -0.931 6.931 26 C -0.060 4.060 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.264 0.736 33 H 0.343 0.657 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 13.954 16.455 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C 0.075 3.925 4 H 0.049 0.951 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.226 1.226 13 N -0.311 5.311 14 C -0.065 4.065 15 C -0.014 4.014 16 O -0.214 6.214 17 C 0.078 3.922 18 C -0.178 4.178 19 C -0.119 4.119 20 C -0.093 4.093 21 C -0.708 4.708 22 S 2.682 3.318 23 C -0.800 4.800 24 O -0.936 6.936 25 O -0.928 6.928 26 C -0.079 4.079 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.160 0.840 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.171 13.017 16.737 23.102 hybrid contribution 0.179 0.482 -1.701 1.777 sum -8.992 13.499 15.036 22.117 Atomic orbital electron populations 1.21718 0.97602 0.99177 1.01385 1.21823 0.93783 0.99349 1.00495 1.19584 0.94433 0.90660 0.87871 0.95108 1.21756 0.90503 1.39221 1.07116 0.90812 1.25020 0.94780 0.95274 0.97961 1.69921 1.08960 1.44967 1.29582 0.86810 0.80531 0.79938 0.80643 1.20428 1.19014 1.22648 1.60807 1.55357 1.05478 1.09489 1.21846 1.00732 0.90948 0.92952 1.23152 0.92035 0.99503 0.86691 1.86203 1.45953 1.73286 1.15999 1.19108 0.93367 0.93462 0.86285 1.21641 0.96798 1.00221 0.99189 1.21060 0.99529 0.99125 0.92159 1.20771 0.92312 0.96661 0.99530 1.30389 1.13373 1.12139 1.14913 1.05137 0.75539 0.76864 0.74278 1.30219 1.16318 1.21184 1.12237 1.93580 1.66110 1.87024 1.46905 1.93624 1.72459 1.42820 1.83946 1.20224 1.00288 0.98183 0.89201 0.94173 0.94855 0.92181 0.93690 0.92303 0.92622 0.83971 0.93561 0.89900 0.92270 0.91317 0.84626 0.84977 0.84220 0.85030 0.84997 0.84723 0.83103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.74 37.16 0.36 -2.20 16 2 C -0.12 -2.53 5.11 -26.73 -0.14 -2.67 16 3 C 0.18 4.19 1.57 -68.86 -0.11 4.08 16 4 H 0.03 0.73 6.76 -51.93 -0.35 0.38 16 5 C -0.55 -14.99 9.05 -34.44 -0.31 -15.31 16 6 H 0.07 2.21 7.97 -52.49 -0.42 1.80 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 9 Si 0.89 21.83 24.41 -169.99 -4.15 17.68 16 10 H -0.28 -6.68 6.83 56.52 0.39 -6.29 16 11 H -0.27 -6.19 6.53 56.52 0.37 -5.82 16 12 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 13 N -0.68 -13.32 5.78 -107.96 -0.62 -13.94 16 14 C 0.07 1.09 5.92 -3.83 -0.02 1.07 16 15 C 0.06 0.81 5.09 37.16 0.19 1.00 16 16 O -0.30 -4.54 9.75 -19.43 -0.19 -4.73 16 17 C 0.13 1.63 6.69 -39.22 -0.26 1.37 16 18 C -0.16 -1.69 9.04 -39.43 -0.36 -2.04 16 19 C -0.10 -0.90 10.04 -39.60 -0.40 -1.30 16 20 C -0.07 -0.68 9.47 -39.56 -0.37 -1.06 16 21 C -0.62 -6.37 5.65 -39.61 -0.22 -6.60 16 22 S 2.50 21.87 5.80 -107.50 -0.62 21.25 16 23 C -0.65 -2.89 10.80 101.05 1.09 -1.80 16 24 O -0.94 -10.57 17.12 -57.54 -0.99 -11.56 16 25 O -0.93 -11.91 17.12 -57.54 -0.99 -12.89 16 26 C -0.06 -0.74 9.41 -39.44 -0.37 -1.11 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 1.03 7.92 -51.93 -0.41 0.62 16 30 H 0.04 1.04 3.21 -51.92 -0.17 0.87 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.34 7.11 8.09 -39.29 -0.32 6.79 16 34 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 35 H 0.08 1.28 7.92 -51.93 -0.41 0.86 16 36 H 0.06 0.63 7.65 -51.93 -0.40 0.23 16 37 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 38 H 0.14 1.19 6.30 -52.48 -0.33 0.86 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.14 0.99 7.57 -52.49 -0.40 0.59 16 41 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 43 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.15 1.85 7.57 -52.48 -0.40 1.46 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -35.77 369.39 -8.80 -44.57 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.56 Total: 5.11 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: -1.02 Total: -24.60 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.15 Total: -40.40 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -2.16 Total: -29.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.15 Total: 17.68 kcal Atomic # 16 Polarization: 21.87 SS G_CDS: -0.62 Total: 21.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.77 -8.80 -44.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574287187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.701 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds