Wall clock time and date at job start Tue Mar 31 2020 15:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47102 * 2 1 4 4 H 1.08993 * 109.47989 * 305.19356 * 3 2 1 5 5 C 1.50708 * 109.47138 * 185.18903 * 3 2 1 6 6 H 1.07996 * 120.00058 * 240.00489 * 5 3 2 7 7 C 1.37879 * 119.99597 * 60.00360 * 5 3 2 8 8 N 1.31517 * 120.00048 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 120.00164 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47284 * 270.00132 * 9 7 5 11 11 H 1.48503 * 109.47220 * 30.00158 * 9 7 5 12 12 H 1.48498 * 109.47191 * 149.99990 * 9 7 5 13 13 N 1.46903 * 109.47106 * 65.19577 * 3 2 1 14 14 C 1.46897 * 110.99935 * 205.84261 * 13 3 2 15 15 C 1.53001 * 109.46884 * 174.76373 * 14 13 3 16 16 O 1.42901 * 109.46982 * 65.00288 * 15 14 13 17 17 C 1.35900 * 117.00200 * 179.97438 * 16 15 14 18 18 C 1.38751 * 120.05324 * 359.72306 * 17 16 15 19 19 C 1.38130 * 119.94055 * 179.70007 * 18 17 16 20 20 C 1.38283 * 120.05596 * 0.60037 * 19 18 17 21 21 C 1.38244 * 120.11227 * 359.67409 * 20 19 18 22 22 S 1.76195 * 119.97132 * 180.02562 * 21 20 19 23 23 C 1.81401 * 104.45048 * 270.02394 * 22 21 20 24 24 O 1.42101 * 104.27941 * 26.09925 * 22 21 20 25 25 O 1.42101 * 104.27639 * 153.95654 * 22 21 20 26 26 C 1.38162 * 120.05312 * 0.02684 * 21 20 19 27 27 H 1.08999 * 109.47047 * 54.37419 * 1 2 3 28 28 H 1.08999 * 109.47105 * 174.37763 * 1 2 3 29 29 H 1.09001 * 109.47059 * 294.37457 * 1 2 3 30 30 H 1.09011 * 109.46810 * 240.00414 * 2 1 3 31 31 H 1.08999 * 109.47271 * 120.00543 * 2 1 3 32 32 H 0.96997 * 119.99833 * 180.02562 * 8 7 5 33 33 H 1.00899 * 111.00140 * 81.88535 * 13 3 2 34 34 H 1.08998 * 109.47383 * 294.76839 * 14 13 3 35 35 H 1.08996 * 109.46990 * 54.77009 * 14 13 3 36 36 H 1.09004 * 109.47234 * 184.99860 * 15 14 13 37 37 H 1.08999 * 109.47666 * 305.00395 * 15 14 13 38 38 H 1.08003 * 120.03048 * 359.97438 * 18 17 16 39 39 H 1.08005 * 119.96946 * 180.30114 * 19 18 17 40 40 H 1.08001 * 119.94391 * 179.70369 * 20 19 18 41 41 H 1.09008 * 109.47228 * 60.00380 * 23 22 21 42 42 H 1.09005 * 109.47442 * 179.97438 * 23 22 21 43 43 H 1.08990 * 109.47287 * 300.00276 * 23 22 21 44 44 H 1.08007 * 120.02657 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6028 1.9825 -0.8397 5 6 3.5416 1.4444 -0.1285 6 1 4.1493 1.8880 0.6462 7 6 4.1394 0.8797 -1.2352 8 7 5.4498 0.8809 -1.3472 9 14 3.0883 0.1117 -2.5749 10 1 2.8684 -1.3247 -2.2691 11 1 1.7793 0.8103 -2.6386 12 1 3.7814 0.2391 -3.8820 13 7 1.6554 2.0978 1.2572 14 6 1.5566 3.5531 1.0835 15 6 1.0295 4.1860 2.3729 16 8 1.9815 3.9942 3.4213 17 6 1.6652 4.5005 4.6422 18 6 0.4657 5.1733 4.8259 19 6 0.1437 5.6816 6.0692 20 6 1.0212 5.5313 7.1273 21 6 2.2195 4.8663 6.9455 22 16 3.3345 4.6762 8.2964 23 6 4.3972 6.1442 8.2163 24 8 2.5024 4.7252 9.4473 25 8 4.0754 3.5063 7.9774 26 6 2.5434 4.3506 5.7053 27 1 -0.3633 0.5986 -0.8353 28 1 -0.3633 -1.0227 -0.1007 29 1 -0.3633 0.4241 0.9361 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 5.8703 0.4840 -2.1260 33 1 2.2995 1.8649 1.9982 34 1 2.5419 3.9596 0.8556 35 1 0.8733 3.7756 0.2640 36 1 0.8720 5.2531 2.2160 37 1 0.0855 3.7161 2.6490 38 1 -0.2177 5.2956 3.9985 39 1 -0.7920 6.2012 6.2139 40 1 0.7698 5.9336 8.0976 41 1 3.7860 7.0412 8.3163 42 1 5.1263 6.1097 9.0259 43 1 4.9176 6.1641 7.2588 44 1 3.4795 3.8308 5.5638 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574287187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:08 Heat of formation + Delta-G solvation = -104.623108 kcal Electronic energy + Delta-G solvation = -25371.033710 eV Core-core repulsion = 21608.273386 eV Total energy + Delta-G solvation = -3762.760324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18542 -38.86252 -38.14614 -37.92389 -36.97579 -34.62868 -33.69907 -32.38658 -31.24346 -30.24738 -29.92247 -28.06143 -24.90567 -24.17831 -23.64721 -22.50817 -21.70139 -20.22695 -19.34183 -19.10026 -17.42604 -17.31082 -17.25869 -17.16853 -16.97190 -16.86552 -16.35628 -15.75155 -15.38209 -15.09682 -14.93631 -14.65446 -14.26375 -14.09978 -13.93811 -13.91391 -13.75353 -13.42926 -13.35638 -13.14943 -13.08954 -13.06137 -12.83891 -12.69856 -12.42622 -12.36669 -12.06549 -11.97854 -11.89161 -11.58914 -11.51436 -11.30936 -11.19091 -10.70671 -10.38096 -9.31966 -9.14061 -8.34697 -6.40580 -0.86926 -0.22260 0.32721 1.29923 1.33286 1.44887 1.88090 2.23261 2.28448 2.43621 3.00436 3.03599 3.23974 3.45602 3.72268 3.94153 4.05076 4.09699 4.12667 4.17770 4.27074 4.32696 4.37225 4.39234 4.47152 4.49021 4.64350 4.72541 4.85714 4.94262 4.96978 4.98004 5.00941 5.14655 5.20545 5.26739 5.29208 5.43773 5.47541 5.61296 5.63398 6.05675 6.36607 6.41661 6.58640 6.74076 7.28170 8.81997 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.002598 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.930356 B =10775.783017 C =11534.671593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.119 4.119 3 C 0.189 3.811 4 H 0.033 0.967 5 C -0.548 4.548 6 H 0.027 0.973 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.241 1.241 12 H -0.300 1.300 13 N -0.670 5.670 14 C 0.062 3.938 15 C 0.069 3.931 16 O -0.334 6.334 17 C 0.097 3.903 18 C -0.160 4.160 19 C -0.095 4.095 20 C -0.074 4.074 21 C -0.623 4.623 22 S 2.507 3.493 23 C -0.623 4.623 24 O -0.968 6.968 25 O -0.984 6.984 26 C -0.088 4.088 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.332 0.668 34 H 0.014 0.986 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.156 0.844 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 15.704 16.897 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.157 4.157 3 C 0.079 3.921 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.046 0.954 7 C -0.185 4.185 8 N -0.588 5.588 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.164 1.164 12 H -0.228 1.228 13 N -0.298 5.298 14 C -0.068 4.068 15 C -0.005 4.005 16 O -0.249 6.249 17 C 0.051 3.949 18 C -0.178 4.178 19 C -0.114 4.114 20 C -0.093 4.093 21 C -0.708 4.708 22 S 2.690 3.310 23 C -0.777 4.777 24 O -0.965 6.965 25 O -0.981 6.981 26 C -0.107 4.107 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.033 0.967 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.174 0.826 39 H 0.186 0.814 40 H 0.183 0.817 41 H 0.179 0.821 42 H 0.173 0.827 43 H 0.164 0.836 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.413 14.748 17.197 25.833 hybrid contribution 1.256 0.091 -1.678 2.098 sum -11.157 14.839 15.519 24.197 Atomic orbital electron populations 1.21623 0.94212 1.00881 1.02201 1.21771 0.96771 0.97661 0.99491 1.19472 0.91037 0.92205 0.89364 0.94903 1.22090 0.93071 1.37911 1.05662 0.95431 1.25934 0.95911 0.95996 1.00704 1.70082 1.11147 1.46862 1.30731 0.85758 0.79579 0.79523 0.76986 1.19426 1.16424 1.22829 1.60850 1.54044 1.07345 1.07595 1.21984 0.99756 0.89058 0.95989 1.23073 0.91695 1.01045 0.84737 1.86143 1.47112 1.74420 1.17197 1.19346 0.94918 0.95083 0.85530 1.21908 0.95889 0.99377 1.00662 1.21522 1.00568 0.98115 0.91164 1.21220 0.91592 0.95649 1.00848 1.30522 1.14426 1.11763 1.14124 1.04868 0.75293 0.77731 0.73096 1.30020 1.15637 1.18124 1.13908 1.93535 1.67337 1.87996 1.47616 1.93560 1.73138 1.47067 1.84363 1.20254 1.00315 0.99704 0.90464 0.93358 0.92728 0.91375 0.94845 0.93278 0.92567 0.85161 0.96742 0.88053 0.89176 0.89895 0.82598 0.81355 0.81741 0.82100 0.82661 0.83617 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.74 71.98 0.70 -3.65 16 2 C -0.12 -5.01 5.11 30.59 0.16 -4.85 16 3 C 0.19 8.62 1.57 44.17 0.07 8.69 16 4 H 0.03 1.51 6.76 -2.39 -0.02 1.49 16 5 C -0.55 -31.30 9.05 25.60 0.23 -31.06 16 6 H 0.03 1.78 7.97 -2.91 -0.02 1.75 16 7 C 0.01 0.73 5.45 84.65 0.46 1.19 16 8 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 9 Si 0.95 45.08 24.41 68.60 1.67 46.75 16 10 H -0.27 -12.19 6.83 99.48 0.68 -11.51 16 11 H -0.24 -10.32 6.53 99.48 0.65 -9.67 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 N -0.67 -26.39 5.78 -495.47 -2.87 -29.26 16 14 C 0.06 2.06 5.92 86.30 0.51 2.57 16 15 C 0.07 1.75 5.09 71.98 0.37 2.12 16 16 O -0.33 -10.39 9.75 -92.42 -0.90 -11.29 16 17 C 0.10 2.57 6.69 22.51 0.15 2.72 16 18 C -0.16 -3.05 9.04 22.37 0.20 -2.85 16 19 C -0.10 -1.43 10.04 22.25 0.22 -1.20 16 20 C -0.07 -1.21 9.47 22.28 0.21 -1.00 16 21 C -0.62 -12.58 5.65 22.25 0.13 -12.45 16 22 S 2.51 43.48 5.80 -56.49 -0.33 43.15 16 23 C -0.62 -3.90 10.80 113.37 1.22 -2.67 16 24 O -0.97 -21.24 17.12 -127.65 -2.19 -23.43 16 25 O -0.98 -26.89 17.12 -127.65 -2.19 -29.07 16 26 C -0.09 -2.29 9.41 22.36 0.21 -2.08 16 27 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 2.14 7.92 -2.39 -0.02 2.12 16 30 H 0.03 1.48 3.21 -2.38 -0.01 1.47 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 33 H 0.33 14.43 8.09 -89.69 -0.73 13.71 16 34 H 0.01 0.56 8.11 -2.39 -0.02 0.54 16 35 H 0.10 2.96 7.92 -2.39 -0.02 2.94 16 36 H 0.09 1.71 7.65 -2.38 -0.02 1.69 16 37 H 0.08 1.86 7.68 -2.39 -0.02 1.84 16 38 H 0.16 2.22 6.30 -2.91 -0.02 2.21 16 39 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.17 1.82 7.57 -2.91 -0.02 1.79 16 41 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.15 0.76 8.14 -2.40 -0.02 0.74 16 44 H 0.13 3.75 7.57 -2.91 -0.02 3.73 16 Total: -1.00 -82.63 369.39 -1.45 -84.08 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.20 Total: 23.32 kcal Atomic # 6 Polarization: -49.38 SS G_CDS: 4.84 Total: -44.54 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -2.57 Total: -88.97 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -5.27 Total: -63.79 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Atomic # 16 Polarization: 43.48 SS G_CDS: -0.33 Total: 43.15 kcal Total: -82.63 -1.45 -84.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574287187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.546 kcal (2) G-P(sol) polarization free energy of solvation -82.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds