Wall clock time and date at job start Tue Mar 31 2020 15:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 H 1.08996 * 109.46906 * 54.88664 * 3 2 1 5 5 C 1.50706 * 109.46946 * 174.89225 * 3 2 1 6 6 H 1.07994 * 119.99845 * 120.00052 * 5 3 2 7 7 C 1.37878 * 119.99577 * 299.99611 * 5 3 2 8 8 N 1.31512 * 120.00097 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99843 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46716 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47289 * 120.00110 * 9 7 5 12 12 H 1.48504 * 109.46863 * 240.00287 * 9 7 5 13 13 N 1.46905 * 109.47024 * 294.88809 * 3 2 1 14 14 C 1.46894 * 110.99737 * 154.15774 * 13 3 2 15 15 C 1.53004 * 109.46851 * 185.52857 * 14 13 3 16 16 O 1.42895 * 109.47236 * 65.00009 * 15 14 13 17 17 C 1.35903 * 117.00081 * 180.02562 * 16 15 14 18 18 C 1.38749 * 120.05470 * 359.72287 * 17 16 15 19 19 C 1.38126 * 119.94533 * 179.70106 * 18 17 16 20 20 C 1.38285 * 120.05141 * 0.59856 * 19 18 17 21 21 C 1.38243 * 120.11149 * 359.67824 * 20 19 18 22 22 S 1.76204 * 119.97337 * 179.97438 * 21 20 19 23 23 C 1.81401 * 104.45040 * 270.02492 * 22 21 20 24 24 O 1.42104 * 104.27481 * 26.09119 * 22 21 20 25 25 O 1.42100 * 104.27963 * 153.95239 * 22 21 20 26 26 C 1.38173 * 120.05803 * 0.02562 * 21 20 19 27 27 H 1.09000 * 109.47230 * 297.59270 * 1 2 3 28 28 H 1.08999 * 109.47234 * 57.59391 * 1 2 3 29 29 H 1.09002 * 109.47409 * 177.59147 * 1 2 3 30 30 H 1.09005 * 109.47067 * 240.00000 * 2 1 3 31 31 H 1.09002 * 109.47116 * 119.99859 * 2 1 3 32 32 H 0.97001 * 119.99801 * 179.97438 * 8 7 5 33 33 H 1.00900 * 110.99940 * 278.11516 * 13 3 2 34 34 H 1.08996 * 109.47276 * 305.52922 * 14 13 3 35 35 H 1.09006 * 109.47167 * 65.53290 * 14 13 3 36 36 H 1.09001 * 109.46900 * 185.00591 * 15 14 13 37 37 H 1.09001 * 109.47173 * 304.99726 * 15 14 13 38 38 H 1.08007 * 120.02954 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.97389 * 180.30290 * 19 18 17 40 40 H 1.08000 * 119.94705 * 179.69930 * 20 19 18 41 41 H 1.09002 * 109.47359 * 59.99803 * 23 22 21 42 42 H 1.09000 * 109.47335 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.47120 * 299.99930 * 23 22 21 44 44 H 1.08001 * 120.02570 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9820 0.8406 5 6 3.5417 1.4443 0.1265 6 1 4.1483 1.8884 -0.6488 7 6 4.1410 0.8791 1.2321 8 7 3.4022 0.3380 2.1760 9 14 6.0024 0.8820 1.3894 10 1 6.5983 1.5461 0.2023 11 1 6.3943 1.6182 2.6179 12 1 6.4942 -0.5168 1.4723 13 7 1.6536 2.0984 -1.2564 14 6 1.5551 3.5536 -1.0818 15 6 1.0194 4.1864 -2.3678 16 8 -0.3193 3.7415 -2.5958 17 6 -0.9457 4.2134 -3.7056 18 6 -0.2874 5.0914 -4.5547 19 6 -0.9240 5.5649 -5.6854 20 6 -2.2208 5.1742 -5.9649 21 6 -2.8808 4.3040 -5.1174 22 16 -4.5334 3.8091 -5.4766 23 6 -5.5673 5.0456 -4.6443 24 8 -4.6392 3.9390 -6.8877 25 8 -4.6650 2.5428 -4.8455 26 6 -2.2462 3.8228 -3.9883 27 1 -0.3634 0.4760 0.9108 28 1 -0.3633 0.5507 -0.8676 29 1 -0.3634 -1.0268 -0.0432 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8239 -0.0599 2.9537 33 1 2.2967 1.8659 -1.9983 34 1 0.8771 3.7756 -0.2578 35 1 2.5418 3.9607 -0.8603 36 1 1.0299 5.2720 -2.2702 37 1 1.6485 3.8910 -3.2075 38 1 0.7235 5.4010 -4.3341 39 1 -0.4104 6.2444 -6.3493 40 1 -2.7187 5.5492 -6.8468 41 1 -5.3429 6.0349 -5.0433 42 1 -6.6187 4.8150 -4.8158 43 1 -5.3615 5.0304 -3.5740 44 1 -2.7622 3.1427 -3.3268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574287188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:12 Heat of formation + Delta-G solvation = -82.643756 kcal Electronic energy + Delta-G solvation = -25322.301238 eV Core-core repulsion = 21560.494011 eV Total energy + Delta-G solvation = -3761.807227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21372 -37.72384 -37.32453 -36.17867 -36.08249 -32.89649 -31.61358 -31.34393 -30.19284 -29.79828 -28.31131 -25.89522 -23.82723 -22.82699 -22.57741 -21.27665 -19.52906 -19.38051 -18.51950 -16.84003 -16.52429 -16.41650 -16.37312 -16.17880 -15.85246 -15.45387 -14.78924 -14.29283 -14.00757 -13.76987 -13.67351 -13.55065 -13.21179 -13.02477 -12.96937 -12.56523 -12.38471 -12.30874 -12.21793 -11.98457 -11.75244 -11.43894 -11.32559 -11.24677 -11.03346 -10.88990 -10.82581 -10.72018 -10.57677 -10.15914 -9.59263 -9.59116 -9.45471 -9.07731 -8.41760 -8.37095 -7.30078 -6.03573 -4.17446 -0.22969 0.59721 1.18102 2.57586 3.22058 3.22733 3.25707 3.31057 3.33027 3.69960 3.88736 4.34927 4.41762 4.49517 4.61995 4.74142 4.84719 4.98259 5.04670 5.21781 5.22730 5.25373 5.27281 5.39994 5.59637 5.79018 5.82216 6.01814 6.08521 6.14682 6.34491 6.42567 6.46594 6.58779 6.78100 7.12836 7.25140 7.39732 7.45574 7.58486 7.75458 8.06127 8.08997 8.29000 8.60674 8.95451 9.50497 10.96310 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.002419 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.666116 B =11571.798749 C =12427.867960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.683 5.683 14 C 0.066 3.934 15 C 0.063 3.937 16 O -0.286 6.286 17 C 0.124 3.876 18 C -0.163 4.163 19 C -0.099 4.099 20 C -0.076 4.076 21 C -0.622 4.622 22 S 2.502 3.498 23 C -0.650 4.650 24 O -0.939 6.939 25 O -0.932 6.932 26 C -0.060 4.060 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.089 0.911 32 H 0.261 0.739 33 H 0.326 0.674 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.185 13.740 -13.809 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.312 5.312 14 C -0.064 4.064 15 C -0.013 4.013 16 O -0.198 6.198 17 C 0.077 3.923 18 C -0.182 4.182 19 C -0.118 4.118 20 C -0.095 4.095 21 C -0.708 4.708 22 S 2.681 3.319 23 C -0.800 4.800 24 O -0.936 6.936 25 O -0.929 6.929 26 C -0.080 4.080 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.157 12.699 -13.836 24.134 hybrid contribution 2.784 1.077 0.631 3.051 sum -12.373 13.776 -13.205 22.742 Atomic orbital electron populations 1.21710 0.98834 0.98488 1.00565 1.21479 0.92276 0.99042 1.01561 1.19158 0.92739 0.91458 0.85883 0.94964 1.21896 0.92748 1.38534 1.05547 0.92885 1.24940 0.97947 0.94936 0.95710 1.69891 1.34752 1.38047 1.09387 0.86598 0.86006 0.77815 0.77885 1.19989 1.21041 1.20902 1.60879 1.54982 1.05132 1.10233 1.21830 0.98932 0.91444 0.94196 1.23119 0.80493 0.97709 0.99938 1.86326 1.28743 1.66283 1.38496 1.19198 0.92492 0.92994 0.87652 1.21650 1.01094 0.99221 0.96188 1.21055 0.94750 0.99486 0.96512 1.20753 0.95360 0.95442 0.97942 1.30367 1.24371 1.11669 1.04407 1.05146 0.75200 0.76224 0.75317 1.30221 1.15641 1.18688 1.15421 1.93582 1.85933 1.86899 1.27196 1.93619 1.85567 1.36128 1.77600 1.20196 0.93167 0.98758 0.95853 0.94617 0.92876 0.95690 0.95166 0.89248 0.92869 0.85745 0.90793 0.93005 0.92402 0.92270 0.84725 0.85042 0.84281 0.85016 0.85014 0.84759 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.83 37.16 0.37 -2.59 16 2 C -0.10 -2.54 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.23 1.97 -68.86 -0.14 5.09 16 4 H 0.03 0.87 7.70 -51.93 -0.40 0.47 16 5 C -0.55 -14.39 8.47 -34.44 -0.29 -14.68 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.97 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.66 11.29 55.43 0.63 -24.03 16 9 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.68 -13.91 5.58 -107.95 -0.60 -14.52 16 14 C 0.07 1.14 5.90 -3.83 -0.02 1.12 16 15 C 0.06 0.86 5.06 37.16 0.19 1.05 16 16 O -0.29 -4.39 10.08 -19.44 -0.20 -4.58 16 17 C 0.12 1.65 6.69 -39.22 -0.26 1.38 16 18 C -0.16 -1.77 9.04 -39.43 -0.36 -2.12 16 19 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 20 C -0.08 -0.71 9.47 -39.56 -0.37 -1.09 16 21 C -0.62 -6.38 5.65 -39.60 -0.22 -6.61 16 22 S 2.50 21.60 5.80 -107.50 -0.62 20.97 16 23 C -0.65 -2.70 10.80 101.05 1.09 -1.61 16 24 O -0.94 -10.55 17.12 -57.54 -0.99 -11.53 16 25 O -0.93 -11.70 17.12 -57.54 -0.99 -12.68 16 26 C -0.06 -0.75 9.41 -39.43 -0.37 -1.12 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.12 7.69 -51.93 -0.40 0.72 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.40 5.95 -51.93 -0.31 2.09 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.33 6.56 8.46 -39.29 -0.33 6.23 16 34 H 0.07 1.33 7.92 -51.93 -0.41 0.92 16 35 H 0.05 0.90 8.12 -51.93 -0.42 0.48 16 36 H 0.06 0.64 7.65 -51.93 -0.40 0.24 16 37 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 38 H 0.13 1.24 6.30 -52.48 -0.33 0.91 16 39 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.14 1.01 7.57 -52.49 -0.40 0.61 16 41 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 42 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.15 1.82 7.57 -52.49 -0.40 1.42 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -34.00 376.47 -9.84 -43.84 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -6.69 Total: 4.62 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -1.03 Total: -23.47 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.02 Total: -38.55 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -2.17 Total: -28.80 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 21.60 SS G_CDS: -0.62 Total: 20.97 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.00 -9.84 -43.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574287188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.808 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds