Wall clock time and date at job start Tue Mar 31 2020 15:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47173 * 2 1 4 4 H 1.08996 * 109.46906 * 54.88664 * 3 2 1 5 5 C 1.50706 * 109.46946 * 174.89225 * 3 2 1 6 6 H 1.07994 * 119.99845 * 120.00052 * 5 3 2 7 7 C 1.37878 * 119.99577 * 299.99611 * 5 3 2 8 8 N 1.31512 * 120.00097 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99843 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46716 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47289 * 120.00110 * 9 7 5 12 12 H 1.48504 * 109.46863 * 240.00287 * 9 7 5 13 13 N 1.46905 * 109.47024 * 294.88809 * 3 2 1 14 14 C 1.46894 * 110.99737 * 154.15774 * 13 3 2 15 15 C 1.53004 * 109.46851 * 185.52857 * 14 13 3 16 16 O 1.42895 * 109.47236 * 65.00009 * 15 14 13 17 17 C 1.35903 * 117.00081 * 180.02562 * 16 15 14 18 18 C 1.38749 * 120.05470 * 359.72287 * 17 16 15 19 19 C 1.38126 * 119.94533 * 179.70106 * 18 17 16 20 20 C 1.38285 * 120.05141 * 0.59856 * 19 18 17 21 21 C 1.38243 * 120.11149 * 359.67824 * 20 19 18 22 22 S 1.76204 * 119.97337 * 179.97438 * 21 20 19 23 23 C 1.81401 * 104.45040 * 270.02492 * 22 21 20 24 24 O 1.42104 * 104.27481 * 26.09119 * 22 21 20 25 25 O 1.42100 * 104.27963 * 153.95239 * 22 21 20 26 26 C 1.38173 * 120.05803 * 0.02562 * 21 20 19 27 27 H 1.09000 * 109.47230 * 297.59270 * 1 2 3 28 28 H 1.08999 * 109.47234 * 57.59391 * 1 2 3 29 29 H 1.09002 * 109.47409 * 177.59147 * 1 2 3 30 30 H 1.09005 * 109.47067 * 240.00000 * 2 1 3 31 31 H 1.09002 * 109.47116 * 119.99859 * 2 1 3 32 32 H 0.97001 * 119.99801 * 179.97438 * 8 7 5 33 33 H 1.00900 * 110.99940 * 278.11516 * 13 3 2 34 34 H 1.08996 * 109.47276 * 305.52922 * 14 13 3 35 35 H 1.09006 * 109.47167 * 65.53290 * 14 13 3 36 36 H 1.09001 * 109.46900 * 185.00591 * 15 14 13 37 37 H 1.09001 * 109.47173 * 304.99726 * 15 14 13 38 38 H 1.08007 * 120.02954 * 359.97438 * 18 17 16 39 39 H 1.07999 * 119.97389 * 180.30290 * 19 18 17 40 40 H 1.08000 * 119.94705 * 179.69930 * 20 19 18 41 41 H 1.09002 * 109.47359 * 59.99803 * 23 22 21 42 42 H 1.09000 * 109.47335 * 179.97438 * 23 22 21 43 43 H 1.09002 * 109.47120 * 299.99930 * 23 22 21 44 44 H 1.08001 * 120.02570 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6038 1.9820 0.8406 5 6 3.5417 1.4443 0.1265 6 1 4.1483 1.8884 -0.6488 7 6 4.1410 0.8791 1.2321 8 7 3.4022 0.3380 2.1760 9 14 6.0024 0.8820 1.3894 10 1 6.5983 1.5461 0.2023 11 1 6.3943 1.6182 2.6179 12 1 6.4942 -0.5168 1.4723 13 7 1.6536 2.0984 -1.2564 14 6 1.5551 3.5536 -1.0818 15 6 1.0194 4.1864 -2.3678 16 8 -0.3193 3.7415 -2.5958 17 6 -0.9457 4.2134 -3.7056 18 6 -0.2874 5.0914 -4.5547 19 6 -0.9240 5.5649 -5.6854 20 6 -2.2208 5.1742 -5.9649 21 6 -2.8808 4.3040 -5.1174 22 16 -4.5334 3.8091 -5.4766 23 6 -5.5673 5.0456 -4.6443 24 8 -4.6392 3.9390 -6.8877 25 8 -4.6650 2.5428 -4.8455 26 6 -2.2462 3.8228 -3.9883 27 1 -0.3634 0.4760 0.9108 28 1 -0.3633 0.5507 -0.8676 29 1 -0.3634 -1.0268 -0.0432 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8239 -0.0599 2.9537 33 1 2.2967 1.8659 -1.9983 34 1 0.8771 3.7756 -0.2578 35 1 2.5418 3.9607 -0.8603 36 1 1.0299 5.2720 -2.2702 37 1 1.6485 3.8910 -3.2075 38 1 0.7235 5.4010 -4.3341 39 1 -0.4104 6.2444 -6.3493 40 1 -2.7187 5.5492 -6.8468 41 1 -5.3429 6.0349 -5.0433 42 1 -6.6187 4.8150 -4.8158 43 1 -5.3615 5.0304 -3.5740 44 1 -2.7622 3.1427 -3.3268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574287188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:12 Heat of formation + Delta-G solvation = -107.343530 kcal Electronic energy + Delta-G solvation = -25323.372301 eV Core-core repulsion = 21560.494011 eV Total energy + Delta-G solvation = -3762.878290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12797 -38.75968 -38.12229 -37.76518 -36.95461 -34.64430 -33.21357 -32.35531 -31.20075 -30.22434 -29.74458 -27.68248 -25.02120 -24.29452 -23.57160 -22.51976 -21.42053 -20.23452 -19.30494 -18.72812 -17.38898 -17.25198 -17.20359 -17.07916 -16.95004 -16.59864 -16.30324 -15.62789 -15.42786 -14.86039 -14.82293 -14.29230 -14.26747 -14.04054 -13.96875 -13.89386 -13.39545 -13.35795 -13.16957 -13.12600 -13.07839 -13.03761 -12.88627 -12.63277 -12.51096 -12.29889 -12.05955 -11.91594 -11.86680 -11.54385 -11.52787 -11.28000 -11.01224 -10.47951 -10.36230 -9.27286 -9.04324 -8.05909 -6.29203 -0.84911 -0.20183 0.35649 1.37153 1.40130 1.49633 1.89877 2.27386 2.39244 2.45867 3.05793 3.13510 3.25815 3.59981 3.75589 3.96390 4.06302 4.10678 4.14780 4.16918 4.22574 4.33832 4.49830 4.51822 4.58221 4.74053 4.77146 4.88016 4.92797 4.94433 4.99256 5.02955 5.17536 5.22909 5.29125 5.41498 5.50552 5.60636 5.64913 5.76618 6.07992 6.17419 6.35615 6.47079 6.81185 7.00618 7.42759 8.90720 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.002419 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.666116 B =11571.798749 C =12427.867960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.223 3.777 4 H 0.000 1.000 5 C -0.559 4.559 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.681 5.681 14 C 0.066 3.934 15 C 0.072 3.928 16 O -0.316 6.316 17 C 0.097 3.903 18 C -0.165 4.165 19 C -0.096 4.096 20 C -0.077 4.077 21 C -0.623 4.623 22 S 2.505 3.495 23 C -0.622 4.622 24 O -0.969 6.969 25 O -0.982 6.982 26 C -0.085 4.085 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.026 0.974 31 H 0.061 0.939 32 H 0.262 0.738 33 H 0.329 0.671 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.152 0.848 39 H 0.166 0.834 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.434 16.054 -15.500 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.018 0.982 5 C -0.598 4.598 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.310 5.310 14 C -0.064 4.064 15 C -0.003 4.003 16 O -0.230 6.230 17 C 0.050 3.950 18 C -0.184 4.184 19 C -0.115 4.115 20 C -0.095 4.095 21 C -0.708 4.708 22 S 2.688 3.312 23 C -0.776 4.776 24 O -0.967 6.967 25 O -0.979 6.979 26 C -0.104 4.104 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.169 0.831 39 H 0.183 0.817 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.166 0.834 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -15.376 15.001 -15.566 26.528 hybrid contribution 2.746 0.452 1.111 2.996 sum -12.630 15.453 -14.455 24.643 Atomic orbital electron populations 1.21560 0.96739 0.99655 1.00342 1.21360 0.94119 0.98689 0.99889 1.18906 0.91737 0.91430 0.86511 0.98204 1.22202 0.93849 1.38203 1.05551 0.92763 1.25707 1.02234 0.94738 0.95528 1.70025 1.36439 1.38775 1.09849 0.85588 0.80835 0.77677 0.77966 1.19200 1.20747 1.20835 1.60783 1.54600 1.07177 1.08453 1.21844 0.98842 0.89573 0.96130 1.22981 0.80314 0.98978 0.98032 1.86248 1.29255 1.67472 1.39986 1.19421 0.93003 0.94606 0.87926 1.21891 1.01814 0.98490 0.96183 1.21489 0.94665 0.99188 0.96143 1.21189 0.95629 0.94567 0.98162 1.30544 1.25279 1.11352 1.03636 1.04924 0.75028 0.76501 0.74702 1.30015 1.15027 1.17190 1.15359 1.93536 1.86169 1.87592 1.29377 1.93557 1.86057 1.40201 1.78129 1.20251 0.93491 0.99688 0.96980 0.95116 0.92664 0.93837 0.95519 0.92042 0.92890 0.85434 0.92209 0.93152 0.89297 0.91203 0.83067 0.81684 0.81882 0.82202 0.82594 0.83370 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 9.83 71.98 0.71 -4.72 16 2 C -0.10 -5.05 5.45 30.59 0.17 -4.88 16 3 C 0.22 11.13 1.97 44.17 0.09 11.22 16 4 H 0.00 0.00 7.70 -2.39 -0.02 -0.02 16 5 C -0.56 -29.75 8.47 25.60 0.22 -29.53 16 6 H 0.05 2.81 7.73 -2.91 -0.02 2.79 16 7 C 0.02 0.97 5.29 84.66 0.45 1.42 16 8 N -0.91 -52.09 11.29 21.45 0.24 -51.85 16 9 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 10 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.68 -28.20 5.58 -495.44 -2.77 -30.97 16 14 C 0.07 2.29 5.90 86.31 0.51 2.80 16 15 C 0.07 1.90 5.06 71.98 0.36 2.26 16 16 O -0.32 -9.73 10.08 -92.46 -0.93 -10.67 16 17 C 0.10 2.54 6.69 22.50 0.15 2.69 16 18 C -0.17 -3.26 9.04 22.37 0.20 -3.06 16 19 C -0.10 -1.50 10.04 22.25 0.22 -1.28 16 20 C -0.08 -1.26 9.47 22.28 0.21 -1.05 16 21 C -0.62 -12.24 5.65 22.26 0.13 -12.11 16 22 S 2.51 41.28 5.80 -56.49 -0.33 40.95 16 23 C -0.62 -3.09 10.80 113.37 1.22 -1.87 16 24 O -0.97 -20.88 17.12 -127.65 -2.19 -23.07 16 25 O -0.98 -25.49 17.12 -127.65 -2.19 -27.68 16 26 C -0.08 -2.13 9.41 22.37 0.21 -1.92 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 2.35 7.69 -2.39 -0.02 2.33 16 29 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.06 3.41 5.95 -2.39 -0.01 3.39 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.33 13.29 8.46 -89.69 -0.76 12.53 16 34 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 35 H 0.05 1.76 8.12 -2.38 -0.02 1.74 16 36 H 0.09 1.78 7.65 -2.39 -0.02 1.76 16 37 H 0.07 1.68 7.67 -2.39 -0.02 1.66 16 38 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 39 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.16 1.84 7.57 -2.91 -0.02 1.82 16 41 H 0.16 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.16 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.14 3.62 7.57 -2.91 -0.02 3.60 16 Total: -1.00 -76.05 376.47 -1.04 -77.09 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.24 Total: 21.43 kcal Atomic # 6 Polarization: -44.87 SS G_CDS: 4.85 Total: -40.03 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -2.52 Total: -82.82 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -5.30 Total: -61.42 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 41.28 SS G_CDS: -0.33 Total: 40.95 kcal Total: -76.05 -1.04 -77.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574287188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.254 kcal (2) G-P(sol) polarization free energy of solvation -76.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds