Wall clock time and date at job start Tue Mar 31 2020 15:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46918 * 2 1 4 4 H 1.08998 * 109.48010 * 54.81804 * 3 2 1 5 5 C 1.50705 * 109.47091 * 174.82005 * 3 2 1 6 6 H 1.08001 * 120.00023 * 119.99822 * 5 3 2 7 7 C 1.37873 * 119.99873 * 299.99657 * 5 3 2 8 8 N 1.31516 * 119.99900 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00208 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47126 * 90.00090 * 9 7 5 11 11 H 1.48501 * 109.47126 * 210.00144 * 9 7 5 12 12 H 1.48497 * 109.46948 * 330.00361 * 9 7 5 13 13 N 1.46906 * 109.47252 * 294.81446 * 3 2 1 14 14 C 1.46905 * 111.00036 * 153.84987 * 13 3 2 15 15 C 1.52999 * 109.46761 * 175.13931 * 14 13 3 16 16 S 1.81406 * 109.46806 * 180.02562 * 15 14 13 17 17 O 1.42101 * 110.54423 * 68.37176 * 16 15 14 18 18 O 1.42102 * 110.54079 * 291.62350 * 16 15 14 19 19 C 1.76195 * 104.45043 * 180.02562 * 16 15 14 20 20 C 1.38291 * 119.96769 * 269.97976 * 19 16 15 21 21 C 1.38246 * 120.10506 * 180.02562 * 20 19 16 22 22 C 1.38166 * 120.06080 * 359.67831 * 21 20 19 23 23 C 1.38713 * 119.93925 * 0.61749 * 22 21 20 24 24 O 1.35903 * 120.05303 * 179.67985 * 23 22 21 25 25 C 1.42898 * 116.99906 * 359.72207 * 24 23 22 26 26 C 1.38116 * 119.97627 * 89.99609 * 19 16 15 27 27 H 1.09007 * 109.46887 * 66.25502 * 1 2 3 28 28 H 1.08991 * 109.47273 * 186.25079 * 1 2 3 29 29 H 1.09007 * 109.47306 * 306.25706 * 1 2 3 30 30 H 1.08999 * 109.47201 * 239.99905 * 2 1 3 31 31 H 1.09004 * 109.47043 * 119.99356 * 2 1 3 32 32 H 0.97005 * 120.00079 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99543 * 29.89695 * 13 3 2 34 34 H 1.08997 * 109.47088 * 55.13428 * 14 13 3 35 35 H 1.09003 * 109.46735 * 295.13811 * 14 13 3 36 36 H 1.08996 * 109.47267 * 60.00150 * 15 14 13 37 37 H 1.08995 * 109.47062 * 299.99450 * 15 14 13 38 38 H 1.07997 * 119.94964 * 359.97438 * 20 19 16 39 39 H 1.08007 * 119.96954 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.02903 * 180.29401 * 22 21 20 41 41 H 1.09001 * 109.47247 * 299.99978 * 25 24 23 42 42 H 1.08992 * 109.46894 * 60.00325 * 25 24 23 43 43 H 1.09005 * 109.46747 * 180.02562 * 25 24 23 44 44 H 1.08010 * 120.02591 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6028 1.9825 0.8399 5 6 3.5415 1.4445 0.1283 6 1 4.1491 1.8882 -0.6465 7 6 4.1396 0.8798 1.2348 8 7 3.3997 0.3390 2.1781 9 14 6.0008 0.8816 1.3936 10 1 6.4365 2.1152 2.0960 11 1 6.4325 -0.3086 2.1696 12 1 6.6129 0.8396 0.0413 13 7 1.6551 2.0979 -1.2572 14 6 1.5492 3.5526 -1.0815 15 6 1.2668 4.2103 -2.4338 16 16 1.1368 6.0066 -2.2170 17 8 2.4002 6.5606 -1.8763 18 8 -0.0311 6.3364 -1.4777 19 6 0.8138 6.6226 -3.8359 20 6 1.8644 6.9731 -4.6640 21 6 1.6142 7.4572 -5.9345 22 6 0.3136 7.5858 -6.3825 23 6 -0.7421 7.2407 -5.5515 24 8 -2.0226 7.3723 -5.9874 25 6 -2.2085 7.8783 -7.3108 26 6 -0.4884 6.7553 -4.2767 27 1 -0.3633 0.4138 -0.9407 28 1 -0.3633 -1.0215 0.1119 29 1 -0.3634 0.6078 0.8287 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.8204 -0.0579 2.9568 33 1 0.7943 1.7135 -1.6166 34 1 2.4850 3.9389 -0.6778 35 1 0.7358 3.7769 -0.3914 36 1 0.3309 3.8239 -2.8374 37 1 2.0802 3.9860 -3.1238 38 1 2.8820 6.8693 -4.3173 39 1 2.4365 7.7307 -6.5793 40 1 0.1188 7.9595 -7.3769 41 1 -1.7704 8.8737 -7.3842 42 1 -1.7228 7.2139 -8.0254 43 1 -3.2745 7.9337 -7.5322 44 1 -1.3087 6.4821 -3.6292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584003142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:19 Heat of formation + Delta-G solvation = -80.280093 kcal Electronic energy + Delta-G solvation = -25391.006623 eV Core-core repulsion = 21629.301891 eV Total energy + Delta-G solvation = -3761.704731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49097 -37.80613 -37.02340 -36.66991 -35.85560 -33.35423 -31.73581 -31.60649 -30.64379 -29.15947 -27.74655 -26.28281 -23.64275 -23.07823 -22.78768 -21.75432 -19.68787 -19.37891 -18.37552 -16.80240 -16.60625 -16.47922 -16.28509 -16.18639 -15.93341 -15.63205 -14.87576 -14.70035 -14.24376 -14.11023 -13.95666 -13.54342 -13.25394 -12.95339 -12.86598 -12.38754 -12.34508 -12.16136 -11.98227 -11.90128 -11.81925 -11.64807 -11.59962 -11.26200 -10.99620 -10.94128 -10.83806 -10.66808 -10.57878 -9.97505 -9.79402 -9.69438 -9.57026 -9.12219 -8.67572 -8.35868 -7.37963 -5.97733 -4.02360 0.02835 0.51362 1.00312 2.75972 2.94374 3.13757 3.34466 3.40787 3.45116 3.89160 4.17961 4.33309 4.45359 4.47729 4.63700 4.69276 4.80133 4.82966 4.88225 5.00135 5.04087 5.16890 5.30074 5.40412 5.48092 5.68859 5.72186 5.83537 5.90171 6.02463 6.11918 6.13613 6.18364 6.25709 6.39210 6.80825 6.92997 7.03222 7.11649 7.40806 7.73709 7.88778 8.17693 8.34199 8.66361 9.05083 9.62950 11.07797 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002756 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.689366 B =10156.451420 C =10894.503805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.214 3.786 4 H 0.007 0.993 5 C -0.498 4.498 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.074 3.926 15 C -0.591 4.591 16 S 2.493 3.507 17 O -0.931 6.931 18 O -0.937 6.937 19 C -0.618 4.618 20 C -0.060 4.060 21 C -0.100 4.100 22 C -0.160 4.160 23 C 0.105 3.895 24 O -0.314 6.314 25 C 0.025 3.975 26 C -0.055 4.055 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.260 0.740 33 H 0.320 0.680 34 H 0.092 0.908 35 H 0.034 0.966 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.304 13.048 -18.923 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C 0.107 3.893 4 H 0.024 0.976 5 C -0.536 4.536 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.057 4.057 15 C -0.723 4.723 16 S 2.673 3.327 17 O -0.928 6.928 18 O -0.934 6.934 19 C -0.703 4.703 20 C -0.079 4.079 21 C -0.119 4.119 22 C -0.179 4.179 23 C 0.059 3.941 24 O -0.228 6.228 25 C -0.070 4.070 26 C -0.074 4.074 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.148 0.852 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.748 13.454 -18.166 24.239 hybrid contribution 0.098 -0.179 -0.619 0.651 sum -8.650 13.274 -18.785 24.574 Atomic orbital electron populations 1.21904 0.99539 0.99911 0.99602 1.21776 0.91262 1.00091 1.03288 1.19257 0.95778 0.90157 0.84068 0.97570 1.21207 0.91033 1.36758 1.04645 0.91846 1.24966 0.98294 0.95497 0.95764 1.69868 1.34839 1.39209 1.09604 0.86530 0.85577 0.77416 0.78099 1.20712 1.21370 1.19859 1.60725 1.36384 1.00226 1.33550 1.21542 1.01829 0.92593 0.89763 1.30332 1.11887 1.20874 1.09206 1.05677 0.74849 0.78312 0.73909 1.93583 1.42163 1.76062 1.80985 1.93565 1.49241 1.82616 1.68009 1.30726 0.99007 1.15758 1.24787 1.20962 0.98766 0.95172 0.93037 1.21110 0.96271 0.98492 0.96046 1.21548 0.93183 1.02865 1.00265 1.19042 0.83602 0.97586 0.93832 1.86112 1.23320 1.80619 1.32709 1.23106 1.03674 0.98503 0.81677 1.20197 0.95833 0.97737 0.93679 0.94612 0.94248 0.93734 0.93910 0.88036 0.92997 0.86213 0.88961 0.94749 0.85162 0.83812 0.83569 0.84648 0.84784 0.92572 0.92505 0.87909 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.63 37.16 0.36 -2.50 16 2 C -0.13 -2.89 5.35 -26.73 -0.14 -3.03 16 3 C 0.21 5.24 2.03 -68.86 -0.14 5.10 16 4 H 0.01 0.18 7.84 -51.93 -0.41 -0.23 16 5 C -0.50 -13.56 8.60 -34.44 -0.30 -13.86 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.27 11.29 55.43 0.63 -24.65 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.73 6.27 -107.94 -0.68 -14.40 16 14 C 0.07 1.33 5.46 -3.82 -0.02 1.31 16 15 C -0.59 -7.71 6.28 37.16 0.23 -7.48 16 16 S 2.49 34.22 5.16 -107.50 -0.55 33.67 16 17 O -0.93 -15.42 17.12 -57.54 -0.99 -16.40 16 18 O -0.94 -15.21 17.12 -57.54 -0.99 -16.19 16 19 C -0.62 -7.35 5.65 -39.61 -0.22 -7.58 16 20 C -0.06 -0.64 9.47 -39.56 -0.37 -1.02 16 21 C -0.10 -0.88 10.04 -39.60 -0.40 -1.27 16 22 C -0.16 -1.37 9.04 -39.43 -0.36 -1.72 16 23 C 0.11 1.11 6.69 -39.22 -0.26 0.84 16 24 O -0.31 -3.04 10.50 -19.43 -0.20 -3.24 16 25 C 0.03 0.13 9.81 101.05 0.99 1.13 16 26 C -0.06 -0.64 9.41 -39.44 -0.37 -1.02 16 27 H 0.03 0.59 6.66 -51.92 -0.35 0.24 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.32 5.76 6.62 -39.29 -0.26 5.50 16 34 H 0.09 1.80 7.97 -51.93 -0.41 1.39 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.14 1.68 8.14 -51.93 -0.42 1.26 16 38 H 0.15 1.40 7.57 -52.49 -0.40 1.00 16 39 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 41 H 0.06 0.23 7.67 -51.93 -0.40 -0.16 16 42 H 0.06 0.23 7.65 -51.93 -0.40 -0.16 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.15 1.66 7.57 -52.48 -0.40 1.26 16 LS Contribution 374.03 15.07 5.64 5.64 Total: -1.00 -34.33 374.03 -9.84 -44.17 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.58 Total: 4.66 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: -1.10 Total: -29.67 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.05 Total: -39.05 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -2.17 Total: -35.84 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 34.22 SS G_CDS: -0.55 Total: 33.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.33 -9.84 -44.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584003142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.110 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds