Wall clock time and date at job start Tue Mar 31 2020 15:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46918 * 2 1 4 4 H 1.08998 * 109.48010 * 54.81804 * 3 2 1 5 5 C 1.50705 * 109.47091 * 174.82005 * 3 2 1 6 6 H 1.08001 * 120.00023 * 119.99822 * 5 3 2 7 7 C 1.37873 * 119.99873 * 299.99657 * 5 3 2 8 8 N 1.31516 * 119.99900 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00208 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47126 * 90.00090 * 9 7 5 11 11 H 1.48501 * 109.47126 * 210.00144 * 9 7 5 12 12 H 1.48497 * 109.46948 * 330.00361 * 9 7 5 13 13 N 1.46906 * 109.47252 * 294.81446 * 3 2 1 14 14 C 1.46905 * 111.00036 * 153.84987 * 13 3 2 15 15 C 1.52999 * 109.46761 * 175.13931 * 14 13 3 16 16 S 1.81406 * 109.46806 * 180.02562 * 15 14 13 17 17 O 1.42101 * 110.54423 * 68.37176 * 16 15 14 18 18 O 1.42102 * 110.54079 * 291.62350 * 16 15 14 19 19 C 1.76195 * 104.45043 * 180.02562 * 16 15 14 20 20 C 1.38291 * 119.96769 * 269.97976 * 19 16 15 21 21 C 1.38246 * 120.10506 * 180.02562 * 20 19 16 22 22 C 1.38166 * 120.06080 * 359.67831 * 21 20 19 23 23 C 1.38713 * 119.93925 * 0.61749 * 22 21 20 24 24 O 1.35903 * 120.05303 * 179.67985 * 23 22 21 25 25 C 1.42898 * 116.99906 * 359.72207 * 24 23 22 26 26 C 1.38116 * 119.97627 * 89.99609 * 19 16 15 27 27 H 1.09007 * 109.46887 * 66.25502 * 1 2 3 28 28 H 1.08991 * 109.47273 * 186.25079 * 1 2 3 29 29 H 1.09007 * 109.47306 * 306.25706 * 1 2 3 30 30 H 1.08999 * 109.47201 * 239.99905 * 2 1 3 31 31 H 1.09004 * 109.47043 * 119.99356 * 2 1 3 32 32 H 0.97005 * 120.00079 * 180.02562 * 8 7 5 33 33 H 1.00898 * 110.99543 * 29.89695 * 13 3 2 34 34 H 1.08997 * 109.47088 * 55.13428 * 14 13 3 35 35 H 1.09003 * 109.46735 * 295.13811 * 14 13 3 36 36 H 1.08996 * 109.47267 * 60.00150 * 15 14 13 37 37 H 1.08995 * 109.47062 * 299.99450 * 15 14 13 38 38 H 1.07997 * 119.94964 * 359.97438 * 20 19 16 39 39 H 1.08007 * 119.96954 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.02903 * 180.29401 * 22 21 20 41 41 H 1.09001 * 109.47247 * 299.99978 * 25 24 23 42 42 H 1.08992 * 109.46894 * 60.00325 * 25 24 23 43 43 H 1.09005 * 109.46747 * 180.02562 * 25 24 23 44 44 H 1.08010 * 120.02591 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6028 1.9825 0.8399 5 6 3.5415 1.4445 0.1283 6 1 4.1491 1.8882 -0.6465 7 6 4.1396 0.8798 1.2348 8 7 3.3997 0.3390 2.1781 9 14 6.0008 0.8816 1.3936 10 1 6.4365 2.1152 2.0960 11 1 6.4325 -0.3086 2.1696 12 1 6.6129 0.8396 0.0413 13 7 1.6551 2.0979 -1.2572 14 6 1.5492 3.5526 -1.0815 15 6 1.2668 4.2103 -2.4338 16 16 1.1368 6.0066 -2.2170 17 8 2.4002 6.5606 -1.8763 18 8 -0.0311 6.3364 -1.4777 19 6 0.8138 6.6226 -3.8359 20 6 1.8644 6.9731 -4.6640 21 6 1.6142 7.4572 -5.9345 22 6 0.3136 7.5858 -6.3825 23 6 -0.7421 7.2407 -5.5515 24 8 -2.0226 7.3723 -5.9874 25 6 -2.2085 7.8783 -7.3108 26 6 -0.4884 6.7553 -4.2767 27 1 -0.3633 0.4138 -0.9407 28 1 -0.3633 -1.0215 0.1119 29 1 -0.3634 0.6078 0.8287 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.8204 -0.0579 2.9568 33 1 0.7943 1.7135 -1.6166 34 1 2.4850 3.9389 -0.6778 35 1 0.7358 3.7769 -0.3914 36 1 0.3309 3.8239 -2.8374 37 1 2.0802 3.9860 -3.1238 38 1 2.8820 6.8693 -4.3173 39 1 2.4365 7.7307 -6.5793 40 1 0.1188 7.9595 -7.3769 41 1 -1.7704 8.8737 -7.3842 42 1 -1.7228 7.2139 -8.0254 43 1 -3.2745 7.9337 -7.5322 44 1 -1.3087 6.4821 -3.6292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584003142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:19 Heat of formation + Delta-G solvation = -105.506492 kcal Electronic energy + Delta-G solvation = -25392.100522 eV Core-core repulsion = 21629.301891 eV Total energy + Delta-G solvation = -3762.798630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.17081 -38.50333 -38.39486 -38.21921 -37.06265 -35.07387 -33.48051 -32.47341 -31.35706 -30.65852 -28.23302 -28.17883 -24.97172 -24.31069 -23.64408 -23.10525 -21.51776 -20.26729 -19.38398 -18.42432 -17.59195 -17.54077 -17.28916 -17.02911 -16.77877 -16.71558 -16.57974 -16.25931 -15.72377 -15.05475 -14.93166 -14.71840 -14.64375 -14.00688 -13.89481 -13.65117 -13.60871 -13.40446 -13.23641 -13.19879 -13.06506 -12.87472 -12.69734 -12.58787 -12.44565 -12.33914 -12.20630 -12.05717 -11.93282 -11.73000 -11.51788 -11.31332 -11.03325 -10.44876 -10.42889 -9.40282 -9.12603 -8.06897 -6.18856 -1.04530 -0.30037 0.25728 1.42890 1.44016 1.54282 1.83637 2.26935 2.34127 2.45000 2.82216 3.14609 3.18855 3.52489 3.67399 3.76414 3.89018 3.93343 4.07749 4.14381 4.35276 4.38874 4.39959 4.43249 4.49846 4.57952 4.66859 4.70701 4.71423 4.78086 4.88970 4.96363 5.09807 5.12103 5.20196 5.24025 5.36377 5.50967 5.58339 5.74639 5.89221 6.30705 6.31319 6.42701 6.92619 6.95254 7.50036 8.96589 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002756 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.689366 B =10156.451420 C =10894.503805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.216 3.784 4 H -0.027 1.027 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.280 1.280 11 H -0.282 1.282 12 H -0.268 1.268 13 N -0.674 5.674 14 C 0.065 3.935 15 C -0.578 4.578 16 S 2.505 3.495 17 O -0.967 6.967 18 O -0.970 6.970 19 C -0.619 4.619 20 C -0.076 4.076 21 C -0.095 4.095 22 C -0.151 4.151 23 C 0.098 3.902 24 O -0.334 6.334 25 C 0.014 3.986 26 C -0.079 4.079 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.261 0.739 33 H 0.336 0.664 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.118 0.882 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.578 13.621 -22.148 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.108 3.892 4 H -0.009 1.009 5 C -0.555 4.555 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.559 5.559 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.208 1.208 12 H -0.193 1.193 13 N -0.307 5.307 14 C -0.067 4.067 15 C -0.710 4.710 16 S 2.689 3.311 17 O -0.964 6.964 18 O -0.967 6.967 19 C -0.707 4.707 20 C -0.095 4.095 21 C -0.114 4.114 22 C -0.169 4.169 23 C 0.052 3.948 24 O -0.248 6.248 25 C -0.080 4.080 26 C -0.099 4.099 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.170 0.830 39 H 0.187 0.813 40 H 0.186 0.814 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.137 0.863 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.033 14.026 -21.374 27.114 hybrid contribution 0.112 -0.284 0.250 0.395 sum -8.920 13.742 -21.123 26.732 Atomic orbital electron populations 1.21790 0.96188 1.01297 1.00739 1.21595 0.94280 0.98537 1.01556 1.19061 0.94343 0.91077 0.84704 1.00909 1.21512 0.92732 1.36645 1.04569 0.92760 1.25693 1.02371 0.95311 0.95584 1.69998 1.36303 1.39715 1.09916 0.85616 0.80784 0.77424 0.78191 1.20570 1.20762 1.19278 1.60570 1.37493 1.01349 1.31297 1.21551 1.00822 0.91535 0.92750 1.30188 1.14335 1.19746 1.06702 1.04915 0.73450 0.78261 0.74474 1.93531 1.43547 1.76931 1.82376 1.93517 1.50035 1.83212 1.69923 1.30149 0.99772 1.17461 1.23333 1.21228 0.98681 0.95659 0.93977 1.21519 0.97508 0.96955 0.95399 1.21963 0.92442 1.01199 1.01340 1.19170 0.84647 0.97401 0.93631 1.86093 1.22953 1.80843 1.34946 1.23445 1.05214 0.99372 0.79988 1.20274 0.95591 0.99191 0.94813 0.91920 0.92310 0.94552 0.93998 0.91309 0.93029 0.84467 0.91387 0.94682 0.81943 0.81997 0.83039 0.81280 0.81355 0.91259 0.91003 0.86342 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.20 9.63 71.98 0.69 -4.51 16 2 C -0.12 -5.60 5.35 30.59 0.16 -5.44 16 3 C 0.22 10.81 2.03 44.17 0.09 10.89 16 4 H -0.03 -1.48 7.84 -2.39 -0.02 -1.50 16 5 C -0.52 -28.78 8.60 25.60 0.22 -28.56 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.49 5.29 84.65 0.45 0.93 16 8 N -0.92 -53.19 11.29 21.45 0.24 -52.94 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 N -0.67 -27.24 6.27 -495.42 -3.11 -30.35 16 14 C 0.06 2.36 5.46 86.30 0.47 2.83 16 15 C -0.58 -14.65 6.28 71.98 0.45 -14.19 16 16 S 2.50 70.00 5.16 -56.49 -0.29 69.71 16 17 O -0.97 -33.07 17.12 -127.65 -2.19 -35.25 16 18 O -0.97 -32.55 17.12 -127.65 -2.19 -34.73 16 19 C -0.62 -14.33 5.65 22.25 0.13 -14.20 16 20 C -0.08 -1.50 9.47 22.28 0.21 -1.29 16 21 C -0.10 -1.35 10.04 22.25 0.22 -1.12 16 22 C -0.15 -2.06 9.04 22.37 0.20 -1.86 16 23 C 0.10 1.86 6.69 22.51 0.15 2.01 16 24 O -0.33 -5.82 10.50 -92.46 -0.97 -6.79 16 25 C 0.01 0.10 9.81 113.37 1.11 1.22 16 26 C -0.08 -1.80 9.41 22.36 0.21 -1.59 16 27 H 0.06 1.93 6.66 -2.38 -0.02 1.91 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 3.66 5.95 -2.38 -0.01 3.64 16 32 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 33 H 0.34 11.59 6.62 -89.70 -0.59 11.00 16 34 H 0.07 2.79 7.97 -2.39 -0.02 2.77 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.16 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.16 3.54 8.14 -2.39 -0.02 3.53 16 38 H 0.15 2.72 7.57 -2.91 -0.02 2.70 16 39 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.17 1.06 6.30 -2.91 -0.02 1.04 16 41 H 0.07 0.34 7.67 -2.39 -0.02 0.32 16 42 H 0.07 0.33 7.65 -2.39 -0.02 0.31 16 43 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.15 3.27 7.57 -2.91 -0.02 3.25 16 Total: -1.00 -76.55 374.03 -1.29 -77.84 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.41 Total: 20.80 kcal Atomic # 6 Polarization: -59.64 SS G_CDS: 4.77 Total: -54.87 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.87 Total: -83.29 kcal Atomic # 8 Polarization: -71.43 SS G_CDS: -5.34 Total: -76.78 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 70.00 SS G_CDS: -0.29 Total: 69.71 kcal Total: -76.55 -1.29 -77.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584003142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.669 kcal (2) G-P(sol) polarization free energy of solvation -76.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds