Wall clock time and date at job start Tue Mar 31 2020 15:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46668 * 2 1 4 4 C 1.53003 * 109.46668 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47132 * 179.97438 * 4 3 2 6 6 C 1.36943 * 119.99741 * 274.99980 * 5 4 3 7 7 H 1.07998 * 119.99766 * 145.91123 * 6 5 4 8 8 C 1.38807 * 119.99948 * 325.91536 * 6 5 4 9 9 N 1.31616 * 120.00516 * 335.38859 * 8 6 5 10 10 Si 1.86807 * 119.99833 * 155.39112 * 8 6 5 11 11 H 1.48499 * 109.47168 * 59.99883 * 10 8 6 12 12 H 1.48497 * 109.46869 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46833 * 299.99908 * 10 8 6 14 14 S 1.65595 * 119.99926 * 94.99977 * 5 4 3 15 15 O 1.42094 * 106.40434 * 29.71119 * 14 5 4 16 16 O 1.42102 * 106.39959 * 162.62999 * 14 5 4 17 17 C 1.76206 * 107.21809 * 276.16624 * 14 5 4 18 18 C 1.38166 * 120.02422 * 113.88982 * 17 14 5 19 19 C 1.38247 * 120.05460 * 179.76881 * 18 17 14 20 20 C 1.50693 * 119.94769 * 180.25482 * 19 18 17 21 21 C 1.38287 * 120.10768 * 0.51251 * 19 18 17 22 22 C 1.38121 * 120.05856 * 359.74250 * 21 19 18 23 23 C 1.38703 * 120.02978 * 294.16885 * 17 14 5 24 24 O 1.35905 * 120.05407 * 359.97438 * 23 17 14 25 25 C 1.42904 * 116.99699 * 180.02562 * 24 23 17 26 26 H 1.09004 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46971 * 300.00365 * 1 2 3 28 28 H 1.08996 * 109.47184 * 60.00046 * 1 2 3 29 29 H 1.08993 * 109.47088 * 239.99743 * 2 1 3 30 30 H 1.08998 * 109.47074 * 119.99429 * 2 1 3 31 31 H 1.08994 * 109.47215 * 60.00441 * 3 2 1 32 32 H 1.08998 * 109.46907 * 299.99531 * 3 2 1 33 33 H 1.09002 * 109.46971 * 59.99635 * 4 3 2 34 34 H 1.08996 * 109.47184 * 299.99954 * 4 3 2 35 35 H 0.96999 * 120.00532 * 179.97438 * 9 8 6 36 36 H 1.08003 * 119.97359 * 0.02698 * 18 17 14 37 37 H 1.08997 * 109.47032 * 270.26016 * 20 19 18 38 38 H 1.09004 * 109.46924 * 30.25288 * 20 19 18 39 39 H 1.08998 * 109.47385 * 150.25366 * 20 19 18 40 40 H 1.07997 * 119.97279 * 179.72697 * 21 19 18 41 41 H 1.08000 * 120.02758 * 179.97438 * 22 21 19 42 42 H 1.08994 * 109.47401 * 59.99878 * 25 24 23 43 43 H 1.08997 * 109.47054 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.47008 * 299.99663 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.1886 3.5034 -1.1830 7 1 4.0032 4.5668 -1.2176 8 6 4.5588 2.8255 -2.3363 9 7 5.2371 1.7009 -2.2497 10 14 4.0944 3.5094 -4.0115 11 1 4.6942 4.8574 -4.1795 12 1 4.6040 2.6055 -5.0737 13 1 2.6162 3.6092 -4.1128 14 16 4.4527 3.5632 1.4270 15 8 4.8899 2.5343 2.3041 16 8 5.2524 4.6882 1.0890 17 6 2.9607 4.2015 2.1133 18 6 2.4645 3.6815 3.2933 19 6 1.2965 4.1852 3.8348 20 6 0.7606 3.6201 5.1249 21 6 0.6162 5.2030 3.1918 22 6 1.1052 5.7227 2.0092 23 6 2.2802 5.2225 1.4664 24 8 2.7635 5.7321 0.3029 25 6 2.0108 6.7824 -0.3075 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 5.4954 1.2270 -3.0556 36 1 2.9918 2.8838 3.7953 37 1 0.0909 2.7883 4.9068 38 1 1.5892 3.2678 5.7393 39 1 0.2141 4.3954 5.6620 40 1 -0.2984 5.5918 3.6145 41 1 0.5733 6.5173 1.5072 42 1 1.9448 7.6276 0.3775 43 1 2.5056 7.0974 -1.2261 44 1 1.0080 6.4233 -0.5392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586136163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:15 Heat of formation + Delta-G solvation = -89.580513 kcal Electronic energy + Delta-G solvation = -27943.027640 eV Core-core repulsion = 24180.919612 eV Total energy + Delta-G solvation = -3762.108028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -39.96005 -37.54481 -36.28369 -35.82625 -34.51401 -33.72619 -31.98566 -31.18136 -31.05908 -28.06287 -27.69505 -25.81611 -24.51185 -23.03038 -22.19018 -21.32129 -20.32894 -18.48599 -18.03914 -16.98925 -16.52013 -16.00397 -15.87647 -15.41976 -14.67241 -14.56847 -14.32710 -14.18578 -14.12355 -13.68010 -13.62011 -13.41515 -13.18482 -12.34848 -12.22533 -12.17000 -12.15585 -12.03221 -11.55611 -11.43895 -11.29426 -11.22112 -11.16702 -10.86987 -10.79616 -10.76116 -10.70390 -10.54103 -10.33586 -10.22490 -9.92417 -9.85242 -9.60015 -9.10440 -8.89290 -7.96487 -7.56361 -6.13897 -3.77632 1.12851 1.55927 1.69534 3.27407 3.32511 3.34315 3.47749 3.66969 4.25415 4.55561 4.77450 4.85940 4.93481 5.08150 5.15278 5.26259 5.33275 5.34937 5.40886 5.48843 5.51507 5.63185 5.67103 5.71101 5.77167 5.84514 5.93514 6.05410 6.06594 6.24687 6.27385 6.31501 6.39007 6.42113 6.49849 6.59191 6.71513 6.81695 6.90672 7.02690 7.43338 7.50988 7.60627 7.90905 8.63928 9.15889 9.54937 10.89368 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.006373 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.359432 B = 4392.400811 C = 5026.448403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.117 3.883 5 N -0.837 5.837 6 C -0.274 4.274 7 H 0.102 0.898 8 C 0.035 3.965 9 N -0.861 5.861 10 Si 0.909 3.091 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.276 1.276 14 S 2.642 3.358 15 O -1.003 7.003 16 O -0.963 6.963 17 C -0.686 4.686 18 C 0.009 3.991 19 C -0.156 4.156 20 C -0.105 4.105 21 C -0.040 4.040 22 C -0.232 4.232 23 C 0.226 3.774 24 O -0.284 6.284 25 C 0.027 3.973 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.056 0.944 35 H 0.265 0.735 36 H 0.142 0.858 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.053 0.947 43 H 0.105 0.895 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.428 3.670 6.627 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.172 4.172 4 C -0.010 4.010 5 N -0.669 5.669 6 C -0.410 4.410 7 H 0.119 0.881 8 C -0.171 4.171 9 N -0.501 5.501 10 Si 0.736 3.264 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.202 1.202 14 S 2.737 3.263 15 O -0.992 6.992 16 O -0.952 6.952 17 C -0.769 4.769 18 C -0.010 4.010 19 C -0.157 4.157 20 C -0.162 4.162 21 C -0.058 4.058 22 C -0.251 4.251 23 C 0.178 3.822 24 O -0.195 6.195 25 C -0.068 4.068 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.160 0.840 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.344 3.629 6.912 13.770 hybrid contribution -1.291 0.665 -0.824 1.670 sum -12.635 4.293 6.087 14.667 Atomic orbital electron populations 1.21758 0.96827 1.00581 1.01364 1.21460 0.94815 0.97966 1.01758 1.22031 0.98508 0.95191 1.01469 1.21375 0.90812 0.84277 1.04568 1.52512 1.76526 1.20436 1.17382 1.19265 1.43222 0.94690 0.83775 0.88093 1.25289 0.95376 0.97047 0.99412 1.70014 1.33313 1.17644 1.29166 0.86281 0.78898 0.78971 0.82209 1.19844 1.21187 1.20229 1.04396 0.73624 0.74019 0.74243 1.93398 1.79566 1.57644 1.68619 1.93447 1.64961 1.53625 1.83209 1.30749 1.27498 1.10567 1.08102 1.20698 0.93373 0.95438 0.91520 1.19837 0.97178 0.99677 0.98981 1.20680 1.01113 1.00647 0.93774 1.20931 0.97687 0.93841 0.93321 1.21244 0.98525 1.05387 0.99950 1.18372 0.90191 0.89363 0.84287 1.86393 1.49288 1.50397 1.33426 1.23114 0.96728 0.88549 0.98431 0.93494 0.93283 0.93060 0.91980 0.92449 0.93722 0.91575 0.86795 0.92585 0.92504 0.83987 0.91492 0.91538 0.91953 0.85824 0.85144 0.92861 0.87660 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.55 5.51 -26.73 -0.15 -2.70 16 4 C 0.12 2.69 5.30 -4.04 -0.02 2.66 16 5 N -0.84 -20.93 2.84 -59.91 -0.17 -21.10 16 6 C -0.27 -7.19 8.54 -15.06 -0.13 -7.32 16 7 H 0.10 2.62 6.14 -52.49 -0.32 2.30 16 8 C 0.04 0.91 4.95 -17.43 -0.09 0.83 16 9 N -0.86 -23.32 11.37 55.49 0.63 -22.69 16 10 Si 0.91 20.12 29.62 -169.99 -5.03 15.09 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 14 S 2.64 64.61 5.24 -107.50 -0.56 64.05 16 15 O -1.00 -25.44 15.66 -57.17 -0.90 -26.34 16 16 O -0.96 -26.28 16.34 -62.77 -1.03 -27.30 16 17 C -0.69 -13.89 5.75 -39.44 -0.23 -14.11 16 18 C 0.01 0.15 9.20 -39.60 -0.36 -0.21 16 19 C -0.16 -2.23 5.88 -104.60 -0.62 -2.84 16 20 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 21 C -0.04 -0.52 9.69 -39.61 -0.38 -0.91 16 22 C -0.23 -3.41 9.04 -39.43 -0.36 -3.77 16 23 C 0.23 4.22 6.63 -39.22 -0.26 3.96 16 24 O -0.28 -5.47 7.25 -30.18 -0.22 -5.69 16 25 C 0.03 0.36 9.81 101.05 0.99 1.35 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.84 7.97 -51.93 -0.41 0.42 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.11 2.83 5.38 -51.93 -0.28 2.55 16 34 H 0.06 1.27 7.01 -51.93 -0.36 0.91 16 35 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.14 2.39 7.33 -52.48 -0.38 2.00 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 42 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 43 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -32.57 368.95 -9.42 -41.98 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.67 Total: 4.03 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -1.03 Total: -27.59 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.46 Total: -43.79 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -2.14 Total: -59.33 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Atomic # 16 Polarization: 64.61 SS G_CDS: -0.56 Total: 64.05 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.57 -9.42 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586136163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.597 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds