Wall clock time and date at job start Tue Mar 31 2020 15:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46668 * 2 1 4 4 C 1.53003 * 109.46668 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47132 * 179.97438 * 4 3 2 6 6 C 1.36943 * 119.99741 * 274.99980 * 5 4 3 7 7 H 1.07998 * 119.99766 * 145.91123 * 6 5 4 8 8 C 1.38807 * 119.99948 * 325.91536 * 6 5 4 9 9 N 1.31616 * 120.00516 * 335.38859 * 8 6 5 10 10 Si 1.86807 * 119.99833 * 155.39112 * 8 6 5 11 11 H 1.48499 * 109.47168 * 59.99883 * 10 8 6 12 12 H 1.48497 * 109.46869 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46833 * 299.99908 * 10 8 6 14 14 S 1.65595 * 119.99926 * 94.99977 * 5 4 3 15 15 O 1.42094 * 106.40434 * 29.71119 * 14 5 4 16 16 O 1.42102 * 106.39959 * 162.62999 * 14 5 4 17 17 C 1.76206 * 107.21809 * 276.16624 * 14 5 4 18 18 C 1.38166 * 120.02422 * 113.88982 * 17 14 5 19 19 C 1.38247 * 120.05460 * 179.76881 * 18 17 14 20 20 C 1.50693 * 119.94769 * 180.25482 * 19 18 17 21 21 C 1.38287 * 120.10768 * 0.51251 * 19 18 17 22 22 C 1.38121 * 120.05856 * 359.74250 * 21 19 18 23 23 C 1.38703 * 120.02978 * 294.16885 * 17 14 5 24 24 O 1.35905 * 120.05407 * 359.97438 * 23 17 14 25 25 C 1.42904 * 116.99699 * 180.02562 * 24 23 17 26 26 H 1.09004 * 109.47114 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46971 * 300.00365 * 1 2 3 28 28 H 1.08996 * 109.47184 * 60.00046 * 1 2 3 29 29 H 1.08993 * 109.47088 * 239.99743 * 2 1 3 30 30 H 1.08998 * 109.47074 * 119.99429 * 2 1 3 31 31 H 1.08994 * 109.47215 * 60.00441 * 3 2 1 32 32 H 1.08998 * 109.46907 * 299.99531 * 3 2 1 33 33 H 1.09002 * 109.46971 * 59.99635 * 4 3 2 34 34 H 1.08996 * 109.47184 * 299.99954 * 4 3 2 35 35 H 0.96999 * 120.00532 * 179.97438 * 9 8 6 36 36 H 1.08003 * 119.97359 * 0.02698 * 18 17 14 37 37 H 1.08997 * 109.47032 * 270.26016 * 20 19 18 38 38 H 1.09004 * 109.46924 * 30.25288 * 20 19 18 39 39 H 1.08998 * 109.47385 * 150.25366 * 20 19 18 40 40 H 1.07997 * 119.97279 * 179.72697 * 21 19 18 41 41 H 1.08000 * 120.02758 * 179.97438 * 22 21 19 42 42 H 1.08994 * 109.47401 * 59.99878 * 25 24 23 43 43 H 1.08997 * 109.47054 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.47008 * 299.99663 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 -0.0013 6 6 4.1886 3.5034 -1.1830 7 1 4.0032 4.5668 -1.2176 8 6 4.5588 2.8255 -2.3363 9 7 5.2371 1.7009 -2.2497 10 14 4.0944 3.5094 -4.0115 11 1 4.6942 4.8574 -4.1795 12 1 4.6040 2.6055 -5.0737 13 1 2.6162 3.6092 -4.1128 14 16 4.4527 3.5632 1.4270 15 8 4.8899 2.5343 2.3041 16 8 5.2524 4.6882 1.0890 17 6 2.9607 4.2015 2.1133 18 6 2.4645 3.6815 3.2933 19 6 1.2965 4.1852 3.8348 20 6 0.7606 3.6201 5.1249 21 6 0.6162 5.2030 3.1918 22 6 1.1052 5.7227 2.0092 23 6 2.2802 5.2225 1.4664 24 8 2.7635 5.7321 0.3029 25 6 2.0108 6.7824 -0.3075 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9288 -0.8908 34 1 3.9337 0.9286 0.8891 35 1 5.4954 1.2270 -3.0556 36 1 2.9918 2.8838 3.7953 37 1 0.0909 2.7883 4.9068 38 1 1.5892 3.2678 5.7393 39 1 0.2141 4.3954 5.6620 40 1 -0.2984 5.5918 3.6145 41 1 0.5733 6.5173 1.5072 42 1 1.9448 7.6276 0.3775 43 1 2.5056 7.0974 -1.2261 44 1 1.0080 6.4233 -0.5392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586136163.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:13 Heat of formation + Delta-G solvation = -110.267654 kcal Electronic energy + Delta-G solvation = -27943.924701 eV Core-core repulsion = 24180.919612 eV Total energy + Delta-G solvation = -3763.005090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.19624 -38.78719 -38.07754 -37.75182 -36.51148 -35.27726 -33.16200 -33.04249 -32.26576 -29.62904 -28.75913 -26.84062 -26.38224 -24.37037 -23.75647 -22.51452 -21.81536 -20.26434 -19.48537 -18.77560 -18.20514 -17.60543 -17.32515 -16.67080 -16.44043 -16.19159 -15.96122 -15.44348 -15.31717 -15.10268 -14.81143 -14.74715 -14.55863 -13.94152 -13.71755 -13.30390 -13.23620 -13.07495 -13.03541 -13.03228 -12.94146 -12.85264 -12.73253 -12.59986 -12.53986 -12.38050 -12.15747 -11.87798 -11.82183 -11.80783 -11.56213 -11.42054 -11.26304 -10.82731 -10.34536 -9.51852 -9.15243 -8.11521 -5.81143 -0.24499 -0.03102 0.35437 1.49551 1.51552 1.59682 2.29239 2.34739 2.51642 2.76059 2.96736 3.24059 3.59618 3.82819 3.98978 4.07256 4.15672 4.20762 4.30309 4.36920 4.38830 4.41437 4.43123 4.54372 4.62718 4.74852 4.88961 4.89292 4.92035 4.93701 4.97795 5.04262 5.06586 5.16434 5.23523 5.27086 5.41868 5.45793 5.48677 5.64280 5.67847 5.78920 5.98708 6.33424 6.65202 7.16868 7.56470 8.91458 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.006373 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.359432 B = 4392.400811 C = 5026.448403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.118 4.118 4 C 0.116 3.884 5 N -0.848 5.848 6 C -0.288 4.288 7 H 0.098 0.902 8 C -0.010 4.010 9 N -0.895 5.895 10 Si 0.973 3.027 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.261 1.261 14 S 2.636 3.364 15 O -1.031 7.031 16 O -1.007 7.007 17 C -0.705 4.705 18 C -0.013 4.013 19 C -0.148 4.148 20 C -0.106 4.106 21 C -0.024 4.024 22 C -0.224 4.224 23 C 0.205 3.795 24 O -0.325 6.325 25 C 0.014 3.986 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.266 0.734 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.174 0.826 41 H 0.167 0.833 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.674 4.909 7.384 18.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.011 4.011 5 N -0.679 5.679 6 C -0.423 4.423 7 H 0.116 0.884 8 C -0.214 4.214 9 N -0.537 5.537 10 Si 0.796 3.204 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.186 1.186 14 S 2.739 3.261 15 O -1.021 7.021 16 O -0.997 6.997 17 C -0.795 4.795 18 C -0.033 4.033 19 C -0.149 4.149 20 C -0.162 4.162 21 C -0.042 4.042 22 C -0.243 4.243 23 C 0.157 3.843 24 O -0.237 6.237 25 C -0.080 4.080 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.192 0.808 41 H 0.184 0.816 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.542 4.841 7.646 17.984 hybrid contribution -0.025 0.345 -0.926 0.989 sum -15.567 5.186 6.719 17.730 Atomic orbital electron populations 1.21699 0.94227 1.02179 1.01750 1.21461 0.97048 0.95517 1.01847 1.21862 0.95466 0.97407 1.00985 1.21389 0.93446 0.83322 1.02955 1.52590 1.76947 1.21044 1.17303 1.19468 1.43390 0.94869 0.84567 0.88405 1.26150 0.95024 0.97400 1.02778 1.70131 1.34439 1.19008 1.30085 0.85312 0.79290 0.78183 0.77566 1.19524 1.21034 1.18596 1.03933 0.74899 0.73224 0.74013 1.93341 1.81297 1.58489 1.68940 1.93373 1.67845 1.54616 1.83915 1.29929 1.26317 1.13122 1.10097 1.20810 0.95202 0.96113 0.91154 1.20277 0.95437 0.99193 0.99985 1.20790 1.01565 1.01917 0.91940 1.21546 0.98501 0.92111 0.92032 1.21667 0.96797 1.05559 1.00272 1.18638 0.91575 0.89538 0.84577 1.86332 1.51280 1.52022 1.34040 1.23466 0.97367 0.88214 0.98957 0.91313 0.92534 0.93018 0.92484 0.91883 0.93307 0.92732 0.88872 0.93549 0.92434 0.84780 0.90089 0.91576 0.89043 0.80839 0.81555 0.90391 0.87325 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.91 71.98 0.71 -2.80 16 2 C -0.12 -3.82 5.93 30.60 0.18 -3.64 16 3 C -0.12 -4.62 5.51 30.60 0.17 -4.45 16 4 C 0.12 5.60 5.30 86.38 0.46 6.06 16 5 N -0.85 -44.66 2.84 -343.45 -0.98 -45.63 16 6 C -0.29 -15.74 8.54 84.03 0.72 -15.02 16 7 H 0.10 5.31 6.14 -2.91 -0.02 5.29 16 8 C -0.01 -0.55 4.95 84.86 0.42 -0.13 16 9 N -0.90 -50.56 11.37 21.65 0.25 -50.31 16 10 Si 0.97 41.92 29.62 68.60 2.03 43.95 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 14 S 2.64 136.86 5.24 -56.49 -0.30 136.57 16 15 O -1.03 -55.97 15.66 -128.00 -2.01 -57.98 16 16 O -1.01 -58.69 16.34 -122.65 -2.00 -60.69 16 17 C -0.70 -29.09 5.75 22.36 0.13 -28.97 16 18 C -0.01 -0.47 9.20 22.25 0.20 -0.26 16 19 C -0.15 -3.74 5.88 -19.85 -0.12 -3.86 16 20 C -0.11 -1.79 10.01 71.23 0.71 -1.08 16 21 C -0.02 -0.52 9.69 22.25 0.22 -0.30 16 22 C -0.22 -5.75 9.04 22.37 0.20 -5.55 16 23 C 0.21 7.49 6.63 22.50 0.15 7.64 16 24 O -0.32 -12.54 7.25 -82.21 -0.60 -13.13 16 25 C 0.01 0.34 9.81 113.37 1.11 1.46 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.85 7.97 -2.39 -0.02 1.83 16 32 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 4.91 5.38 -2.39 -0.01 4.90 16 34 H 0.05 2.25 7.01 -2.39 -0.02 2.24 16 35 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 36 H 0.13 4.68 7.33 -2.91 -0.02 4.66 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 39 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 40 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.17 2.99 6.30 -2.91 -0.02 2.97 16 42 H 0.08 1.51 7.66 -2.39 -0.02 1.49 16 43 H 0.11 2.55 8.14 -2.39 -0.02 2.54 16 44 H 0.08 1.56 7.66 -2.38 -0.02 1.55 16 Total: -1.00 -76.56 368.95 2.66 -73.90 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.99 Total: 24.24 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 5.27 Total: -50.91 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -0.73 Total: -95.95 kcal Atomic # 8 Polarization: -127.19 SS G_CDS: -4.60 Total: -131.80 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 136.86 SS G_CDS: -0.30 Total: 136.57 kcal Total: -76.56 2.66 -73.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586136163.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.368 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds