Wall clock time and date at job start Tue Mar 31 2020 15:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47115 * 2 1 4 4 C 1.53001 * 109.46995 * 119.99817 * 2 1 3 5 5 H 1.09003 * 109.47026 * 300.00026 * 4 2 1 6 6 C 1.53002 * 109.47389 * 60.00243 * 4 2 1 7 7 O 1.42898 * 109.47333 * 185.00134 * 6 4 2 8 8 C 1.52999 * 109.47215 * 180.02562 * 4 2 1 9 9 N 1.46505 * 109.47364 * 174.99866 * 8 4 2 10 10 S 1.65599 * 120.00182 * 165.00093 * 9 8 4 11 11 O 1.42104 * 106.40175 * 178.54307 * 10 9 8 12 12 O 1.42103 * 106.39931 * 311.45951 * 10 9 8 13 13 C 1.76197 * 107.22072 * 64.99932 * 10 9 8 14 14 C 1.38660 * 119.87584 * 269.73136 * 13 10 9 15 15 C 1.38617 * 120.49907 * 179.71731 * 14 13 10 16 16 C 1.37632 * 120.24543 * 0.55438 * 15 14 13 17 17 C 1.40693 * 119.74893 * 359.72231 * 16 15 14 18 18 C 1.41397 * 120.24582 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00233 * 150.20822 * 18 17 16 20 20 C 1.39940 * 119.99941 * 330.20513 * 18 17 16 21 21 N 1.30833 * 119.99868 * 161.73321 * 20 18 17 22 22 Si 1.86800 * 120.00253 * 341.73672 * 20 18 17 23 23 H 1.48503 * 109.47073 * 95.40907 * 22 20 18 24 24 H 1.48504 * 109.47130 * 215.40803 * 22 20 18 25 25 H 1.48504 * 109.46967 * 335.40978 * 22 20 18 26 26 C 1.37597 * 119.87310 * 89.99664 * 13 10 9 27 27 H 1.09000 * 109.47723 * 300.00486 * 1 2 3 28 28 H 1.09004 * 109.47222 * 60.00206 * 1 2 3 29 29 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47723 * 239.99514 * 2 1 3 31 31 H 1.08993 * 109.46835 * 59.99989 * 3 2 1 32 32 H 1.09006 * 109.46813 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47041 * 299.99307 * 3 2 1 34 34 H 1.09006 * 109.46651 * 304.99805 * 6 4 2 35 35 H 1.09000 * 109.46997 * 65.00005 * 6 4 2 36 36 H 0.96701 * 113.99748 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.47318 * 55.00247 * 8 4 2 38 38 H 1.09002 * 109.47152 * 294.99924 * 8 4 2 39 39 H 0.96996 * 119.99582 * 345.00009 * 9 8 4 40 40 H 1.08001 * 119.74891 * 359.97438 * 14 13 10 41 41 H 1.08003 * 119.87416 * 180.24980 * 15 14 13 42 42 H 1.08001 * 120.12777 * 179.70305 * 16 15 14 43 43 H 0.96998 * 119.99989 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.13139 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1392 6 6 1.5300 -2.1638 1.2493 7 8 1.9079 -2.8026 2.4704 8 6 3.5699 -0.7207 1.2497 9 7 4.0582 -1.3044 2.5015 10 16 5.6404 -1.7750 2.6340 11 8 5.8049 -2.2607 3.9593 12 8 5.9253 -2.5535 1.4799 13 6 6.6289 -0.3217 2.5104 14 6 7.0791 0.1040 1.2699 15 6 7.8527 1.2486 1.1570 16 6 8.1920 1.9695 2.2793 17 6 7.7457 1.5438 3.5438 18 6 8.0876 2.2767 4.7037 19 1 7.4215 2.2839 5.5539 20 6 9.2891 2.9927 4.7500 21 7 9.4527 3.9391 5.6385 22 14 10.6592 2.5974 3.5434 23 1 10.5765 3.5185 2.3815 24 1 11.9733 2.7640 4.2147 25 1 10.5168 1.1954 3.0748 26 6 6.9559 0.3834 3.6458 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.4436 -2.1650 1.1598 35 1 1.9646 -2.7028 0.4076 36 1 1.6167 -3.7221 2.5398 37 1 3.9329 0.3032 1.1603 38 1 3.9336 -1.3099 0.4079 39 1 3.4547 -1.4151 3.2528 40 1 6.8216 -0.4583 0.3845 41 1 8.1945 1.5732 0.1853 42 1 8.7988 2.8584 2.1897 43 1 10.2856 4.4351 5.6709 44 1 6.6075 0.0480 4.6114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588136113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:08 Heat of formation + Delta-G solvation = -125.009956 kcal Electronic energy + Delta-G solvation = -26479.343719 eV Core-core repulsion = 22715.699355 eV Total energy + Delta-G solvation = -3763.644364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.80164 -37.89504 -36.62534 -35.88702 -35.26984 -34.19259 -33.75947 -30.70260 -30.13609 -29.53533 -27.86857 -25.37841 -24.86565 -22.44830 -22.33342 -20.88701 -20.21322 -18.95538 -17.94375 -17.44647 -16.86219 -16.32748 -16.09711 -15.67914 -15.19303 -14.85652 -14.83732 -14.53320 -14.13888 -13.81508 -13.59741 -13.13558 -13.06461 -12.86293 -12.76651 -12.34294 -12.24379 -12.05370 -11.84079 -11.76411 -11.62891 -11.58075 -11.49896 -11.38060 -11.02265 -10.85454 -10.81151 -10.77403 -10.64085 -10.31088 -10.03256 -9.98086 -9.74133 -9.31224 -8.97625 -8.25121 -7.86082 -7.07420 -4.62581 1.04157 1.94744 2.43073 3.00126 3.12529 3.22083 3.56582 3.86839 4.01808 4.18204 4.38656 4.48569 4.63463 4.81423 4.92138 5.03737 5.17340 5.18918 5.22538 5.35299 5.43361 5.47640 5.51868 5.62324 5.68912 5.76892 5.82423 5.88244 5.93282 6.03208 6.14522 6.17125 6.21848 6.28833 6.48073 6.61864 6.88509 7.09803 7.21980 7.38829 7.41677 7.57642 7.63653 7.79524 8.19721 8.44471 8.63117 9.94561 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.003703 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.135664 B = 7559.120351 C = 8220.413460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.154 4.154 4 C -0.091 4.091 5 H 0.087 0.913 6 C 0.079 3.921 7 O -0.567 6.567 8 C 0.125 3.875 9 N -1.106 6.106 10 S 2.692 3.308 11 O -0.971 6.971 12 O -0.977 6.977 13 C -0.627 4.627 14 C -0.159 4.159 15 C -0.093 4.093 16 C -0.199 4.199 17 C 0.073 3.927 18 C -0.444 4.444 19 H 0.095 0.905 20 C 0.084 3.916 21 N -0.801 5.801 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.101 4.101 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.377 0.623 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.421 0.579 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.287 0.713 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 -6.344 -10.557 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.211 4.211 4 C -0.111 4.111 5 H 0.105 0.895 6 C 0.001 3.999 7 O -0.373 6.373 8 C -0.001 4.001 9 N -0.867 5.867 10 S 2.787 3.213 11 O -0.962 6.962 12 O -0.967 6.967 13 C -0.717 4.717 14 C -0.180 4.180 15 C -0.112 4.112 16 C -0.218 4.218 17 C 0.069 3.931 18 C -0.472 4.472 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.425 5.425 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.166 1.166 26 C -0.122 4.122 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.224 0.776 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.257 0.743 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.419 -6.401 -10.294 18.837 hybrid contribution 0.371 0.302 -0.329 0.580 sum -14.047 -6.099 -10.623 18.638 Atomic orbital electron populations 1.21925 0.95014 1.01734 1.02074 1.21038 0.95835 0.96706 0.97177 1.21946 1.02052 0.95110 1.02036 1.21460 0.95072 0.94932 0.99609 0.89501 1.22305 0.97733 0.93109 0.86728 1.86441 1.81571 1.30068 1.39183 1.21307 0.93960 0.98687 0.86159 1.55341 1.28439 1.80789 1.22104 1.01577 0.72398 0.74377 0.72997 1.93543 1.85319 1.79356 1.37964 1.93497 1.84107 1.67518 1.51585 1.30071 1.18831 1.22441 1.00396 1.20064 1.04550 0.98995 0.94373 1.20697 0.98029 0.95247 0.97225 1.21287 1.06359 1.01255 0.92930 1.17796 0.91727 0.90705 0.92835 1.19520 1.04493 1.22446 1.00736 0.88685 1.26152 1.00154 0.91785 0.95463 1.69683 1.26710 1.14496 1.31565 0.86380 0.78686 0.82030 0.79712 1.19444 1.21337 1.16638 1.20863 1.01665 0.94332 0.95374 0.92437 0.92490 0.92543 0.90637 0.92313 0.91569 0.92487 0.93402 0.93524 0.77584 0.91075 0.90847 0.74304 0.87132 0.87965 0.87665 0.90215 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.85 37.15 0.33 -0.67 16 2 C -0.09 -0.70 2.51 -90.62 -0.23 -0.93 16 3 C -0.15 -1.32 8.85 37.16 0.33 -0.99 16 4 C -0.09 -0.88 1.84 -90.62 -0.17 -1.04 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 6 C 0.08 0.69 6.21 37.16 0.23 0.92 16 7 O -0.57 -5.60 11.20 -35.23 -0.39 -5.99 16 8 C 0.13 1.56 5.40 -4.04 -0.02 1.54 16 9 N -1.11 -16.19 5.06 -10.61 -0.05 -16.25 16 10 S 2.69 50.37 5.74 -107.50 -0.62 49.75 16 11 O -0.97 -20.73 17.27 -57.17 -0.99 -21.71 16 12 O -0.98 -19.68 16.73 -57.17 -0.96 -20.64 16 13 C -0.63 -13.27 5.94 -39.66 -0.24 -13.50 16 14 C -0.16 -3.25 9.53 -39.29 -0.37 -3.63 16 15 C -0.09 -1.94 10.02 -39.66 -0.40 -2.34 16 16 C -0.20 -4.65 7.18 -38.88 -0.28 -4.93 16 17 C 0.07 1.84 5.10 -106.82 -0.55 1.29 16 18 C -0.44 -11.79 9.57 -37.74 -0.36 -12.15 16 19 H 0.10 2.62 8.06 -52.48 -0.42 2.20 16 20 C 0.08 2.17 5.40 -17.34 -0.09 2.07 16 21 N -0.80 -20.87 13.93 55.55 0.77 -20.10 16 22 Si 0.91 20.36 24.52 -169.99 -4.17 16.19 16 23 H -0.27 -5.75 6.71 56.52 0.38 -5.38 16 24 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.24 -5.67 6.86 56.52 0.39 -5.29 16 26 C -0.10 -2.38 9.26 -38.87 -0.36 -2.74 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 6.32 -51.93 -0.33 0.01 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.63 6.32 -51.93 -0.33 0.30 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.33 6.18 -51.93 -0.32 0.01 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.38 2.23 9.12 45.56 0.42 2.65 16 37 H 0.07 0.89 6.17 -51.93 -0.32 0.57 16 38 H 0.07 0.91 7.75 -51.93 -0.40 0.51 16 39 H 0.42 5.75 7.23 -34.47 -0.25 5.50 16 40 H 0.11 2.01 7.59 -52.49 -0.40 1.61 16 41 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.11 2.42 4.73 -52.49 -0.25 2.17 16 43 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 44 H 0.12 2.71 7.60 -52.49 -0.40 2.31 16 LS Contribution 361.20 15.07 5.44 5.44 Total: -1.00 -31.97 361.20 -8.69 -40.66 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.56 Total: 9.75 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: -2.17 Total: -37.10 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.72 Total: -36.35 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -2.34 Total: -48.34 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.17 Total: 16.19 kcal Atomic # 16 Polarization: 50.37 SS G_CDS: -0.62 Total: 49.75 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.97 -8.69 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588136113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.354 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds