Wall clock time and date at job start Tue Mar 31 2020 15:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47115 * 2 1 4 4 C 1.53001 * 109.46995 * 119.99817 * 2 1 3 5 5 H 1.09003 * 109.47026 * 300.00026 * 4 2 1 6 6 C 1.53002 * 109.47389 * 60.00243 * 4 2 1 7 7 O 1.42898 * 109.47333 * 185.00134 * 6 4 2 8 8 C 1.52999 * 109.47215 * 180.02562 * 4 2 1 9 9 N 1.46505 * 109.47364 * 174.99866 * 8 4 2 10 10 S 1.65599 * 120.00182 * 165.00093 * 9 8 4 11 11 O 1.42104 * 106.40175 * 178.54307 * 10 9 8 12 12 O 1.42103 * 106.39931 * 311.45951 * 10 9 8 13 13 C 1.76197 * 107.22072 * 64.99932 * 10 9 8 14 14 C 1.38660 * 119.87584 * 269.73136 * 13 10 9 15 15 C 1.38617 * 120.49907 * 179.71731 * 14 13 10 16 16 C 1.37632 * 120.24543 * 0.55438 * 15 14 13 17 17 C 1.40693 * 119.74893 * 359.72231 * 16 15 14 18 18 C 1.41397 * 120.24582 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00233 * 150.20822 * 18 17 16 20 20 C 1.39940 * 119.99941 * 330.20513 * 18 17 16 21 21 N 1.30833 * 119.99868 * 161.73321 * 20 18 17 22 22 Si 1.86800 * 120.00253 * 341.73672 * 20 18 17 23 23 H 1.48503 * 109.47073 * 95.40907 * 22 20 18 24 24 H 1.48504 * 109.47130 * 215.40803 * 22 20 18 25 25 H 1.48504 * 109.46967 * 335.40978 * 22 20 18 26 26 C 1.37597 * 119.87310 * 89.99664 * 13 10 9 27 27 H 1.09000 * 109.47723 * 300.00486 * 1 2 3 28 28 H 1.09004 * 109.47222 * 60.00206 * 1 2 3 29 29 H 1.08998 * 109.47125 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47723 * 239.99514 * 2 1 3 31 31 H 1.08993 * 109.46835 * 59.99989 * 3 2 1 32 32 H 1.09006 * 109.46813 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47041 * 299.99307 * 3 2 1 34 34 H 1.09006 * 109.46651 * 304.99805 * 6 4 2 35 35 H 1.09000 * 109.46997 * 65.00005 * 6 4 2 36 36 H 0.96701 * 113.99748 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.47318 * 55.00247 * 8 4 2 38 38 H 1.09002 * 109.47152 * 294.99924 * 8 4 2 39 39 H 0.96996 * 119.99582 * 345.00009 * 9 8 4 40 40 H 1.08001 * 119.74891 * 359.97438 * 14 13 10 41 41 H 1.08003 * 119.87416 * 180.24980 * 15 14 13 42 42 H 1.08001 * 120.12777 * 179.70305 * 16 15 14 43 43 H 0.96998 * 119.99989 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.13139 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2073 2.1392 6 6 1.5300 -2.1638 1.2493 7 8 1.9079 -2.8026 2.4704 8 6 3.5699 -0.7207 1.2497 9 7 4.0582 -1.3044 2.5015 10 16 5.6404 -1.7750 2.6340 11 8 5.8049 -2.2607 3.9593 12 8 5.9253 -2.5535 1.4799 13 6 6.6289 -0.3217 2.5104 14 6 7.0791 0.1040 1.2699 15 6 7.8527 1.2486 1.1570 16 6 8.1920 1.9695 2.2793 17 6 7.7457 1.5438 3.5438 18 6 8.0876 2.2767 4.7037 19 1 7.4215 2.2839 5.5539 20 6 9.2891 2.9927 4.7500 21 7 9.4527 3.9391 5.6385 22 14 10.6592 2.5974 3.5434 23 1 10.5765 3.5185 2.3815 24 1 11.9733 2.7640 4.2147 25 1 10.5168 1.1954 3.0748 26 6 6.9559 0.3834 3.6458 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.4436 -2.1650 1.1598 35 1 1.9646 -2.7028 0.4076 36 1 1.6167 -3.7221 2.5398 37 1 3.9329 0.3032 1.1603 38 1 3.9336 -1.3099 0.4079 39 1 3.4547 -1.4151 3.2528 40 1 6.8216 -0.4583 0.3845 41 1 8.1945 1.5732 0.1853 42 1 8.7988 2.8584 2.1897 43 1 10.2856 4.4351 5.6709 44 1 6.6075 0.0480 4.6114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588136113.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:08 Heat of formation + Delta-G solvation = -149.493922 kcal Electronic energy + Delta-G solvation = -26480.405423 eV Core-core repulsion = 22715.699355 eV Total energy + Delta-G solvation = -3764.706068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.70187 -39.55323 -38.22696 -36.88580 -36.58510 -35.64917 -35.23092 -32.54506 -31.88992 -30.33532 -28.52323 -27.25419 -25.70554 -24.09729 -23.19159 -22.67503 -21.09914 -20.41510 -19.55278 -18.43922 -18.07847 -17.98163 -17.39386 -17.01959 -16.65717 -16.45846 -15.98731 -15.48508 -15.45894 -14.88482 -14.85276 -14.69157 -14.42062 -14.07897 -13.91555 -13.56981 -13.43357 -13.36758 -13.24723 -13.15638 -13.05574 -12.93226 -12.88844 -12.56878 -12.52465 -12.32649 -12.04047 -11.79837 -11.59863 -11.55094 -11.48538 -11.36915 -11.06859 -10.72440 -10.19397 -9.99439 -9.69575 -8.97828 -6.60744 -0.48428 0.18092 0.64081 1.19813 1.35199 1.42425 2.03603 2.15500 2.42913 2.78651 3.28450 3.37217 3.47136 3.74921 3.93732 4.17323 4.19979 4.27179 4.32452 4.43431 4.49169 4.51821 4.56282 4.67659 4.74946 4.75507 4.82530 4.85811 4.95852 5.01847 5.06239 5.10743 5.12256 5.26547 5.33781 5.34971 5.43116 5.52172 5.57027 5.61796 5.75059 5.98517 6.22772 6.27221 6.57489 6.68338 7.02565 8.10577 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.003703 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.135664 B = 7559.120351 C = 8220.413460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.157 4.157 4 C -0.087 4.087 5 H 0.080 0.920 6 C 0.077 3.923 7 O -0.590 6.590 8 C 0.114 3.886 9 N -1.091 6.091 10 S 2.717 3.283 11 O -1.000 7.000 12 O -0.984 6.984 13 C -0.634 4.634 14 C -0.142 4.142 15 C -0.094 4.094 16 C -0.204 4.204 17 C 0.055 3.945 18 C -0.485 4.485 19 H 0.060 0.940 20 C 0.050 3.950 21 N -0.841 5.841 22 Si 0.956 3.044 23 H -0.246 1.246 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.125 4.125 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.393 0.607 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.427 0.573 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.296 0.704 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 -7.332 -13.963 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 C -0.214 4.214 4 C -0.108 4.108 5 H 0.098 0.902 6 C -0.001 4.001 7 O -0.398 6.398 8 C -0.012 4.012 9 N -0.855 5.855 10 S 2.808 3.192 11 O -0.991 6.991 12 O -0.974 6.974 13 C -0.722 4.722 14 C -0.162 4.162 15 C -0.113 4.113 16 C -0.224 4.224 17 C 0.052 3.948 18 C -0.514 4.514 19 H 0.078 0.922 20 C -0.166 4.166 21 N -0.467 5.467 22 Si 0.779 3.221 23 H -0.170 1.170 24 H -0.200 1.200 25 H -0.181 1.181 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.243 0.757 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.265 0.735 40 H 0.161 0.839 41 H 0.163 0.837 42 H 0.128 0.872 43 H 0.107 0.893 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.289 -7.372 -13.699 21.812 hybrid contribution 0.443 0.472 0.596 0.880 sum -14.846 -6.900 -13.104 20.970 Atomic orbital electron populations 1.21906 0.93772 1.02494 1.02319 1.21021 0.96782 0.95935 0.96514 1.21971 1.01302 0.95827 1.02312 1.21468 0.92871 0.96116 1.00314 0.90160 1.22379 0.99045 0.92199 0.86452 1.86383 1.82067 1.31572 1.39819 1.21615 0.96155 0.98467 0.84940 1.55052 1.26510 1.80580 1.23385 1.00852 0.72882 0.73417 0.72007 1.93502 1.86179 1.79789 1.39594 1.93483 1.84843 1.67389 1.51716 1.30516 1.18845 1.22844 1.00012 1.20617 1.02178 0.98416 0.95036 1.21175 0.97114 0.94702 0.98283 1.21495 1.06170 1.01713 0.92990 1.17939 0.92545 0.91142 0.93188 1.19489 1.05578 1.25445 1.00916 0.92173 1.26794 1.01430 0.91334 0.97016 1.69704 1.27868 1.15715 1.33401 0.85627 0.76632 0.81180 0.78692 1.17045 1.19956 1.18095 1.20879 1.02695 0.94811 0.96166 0.92832 0.91661 0.91526 0.89709 0.92958 0.92720 0.91375 0.91256 0.93109 0.75721 0.91189 0.90278 0.73510 0.83900 0.83664 0.87237 0.89292 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.85 71.98 0.64 -0.91 16 2 C -0.08 -1.11 2.51 -10.79 -0.03 -1.14 16 3 C -0.16 -2.40 8.85 71.98 0.64 -1.76 16 4 C -0.09 -1.50 1.84 -10.79 -0.02 -1.52 16 5 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 6 C 0.08 1.13 6.21 71.98 0.45 1.58 16 7 O -0.59 -10.44 11.20 -148.98 -1.67 -12.10 16 8 C 0.11 2.60 5.40 86.38 0.47 3.07 16 9 N -1.09 -30.45 5.06 -187.48 -0.95 -31.40 16 10 S 2.72 98.32 5.74 -56.49 -0.32 97.99 16 11 O -1.00 -42.64 17.27 -128.00 -2.21 -44.85 16 12 O -0.98 -37.23 16.73 -128.00 -2.14 -39.37 16 13 C -0.63 -26.15 5.94 22.22 0.13 -26.01 16 14 C -0.14 -5.37 9.53 22.46 0.21 -5.16 16 15 C -0.09 -3.62 10.02 22.22 0.22 -3.40 16 16 C -0.20 -9.30 7.18 22.73 0.16 -9.14 16 17 C 0.06 2.83 5.10 -21.29 -0.11 2.72 16 18 C -0.49 -27.26 9.57 23.46 0.22 -27.04 16 19 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 20 C 0.05 2.65 5.40 85.25 0.46 3.11 16 21 N -0.84 -45.55 13.93 21.83 0.30 -45.25 16 22 Si 0.96 41.71 24.52 68.60 1.68 43.39 16 23 H -0.25 -9.74 6.71 99.48 0.67 -9.08 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.26 -11.66 6.86 99.48 0.68 -10.98 16 26 C -0.12 -5.98 9.26 22.73 0.21 -5.77 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.59 8.14 -2.38 -0.02 0.58 16 29 H 0.07 0.57 6.32 -2.39 -0.02 0.55 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.95 6.32 -2.38 -0.02 0.93 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.73 6.18 -2.38 -0.01 0.72 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.39 3.85 9.12 -74.06 -0.68 3.17 16 37 H 0.07 1.62 6.17 -2.39 -0.01 1.61 16 38 H 0.08 1.74 7.75 -2.39 -0.02 1.72 16 39 H 0.43 11.24 7.23 -96.75 -0.70 10.54 16 40 H 0.14 4.52 7.59 -2.91 -0.02 4.50 16 41 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.11 4.85 4.73 -2.91 -0.01 4.84 16 43 H 0.30 14.32 8.30 -92.71 -0.77 13.55 16 44 H 0.11 5.33 7.60 -2.91 -0.02 5.31 16 Total: -1.00 -70.08 361.20 -2.05 -72.14 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.41 Total: 30.83 kcal Atomic # 6 Polarization: -75.04 SS G_CDS: 3.66 Total: -71.38 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -0.65 Total: -76.64 kcal Atomic # 8 Polarization: -90.31 SS G_CDS: -6.02 Total: -96.33 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.68 Total: 43.39 kcal Atomic # 16 Polarization: 98.32 SS G_CDS: -0.32 Total: 97.99 kcal Total: -70.08 -2.05 -72.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588136113.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.358 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds