Wall clock time and date at job start Tue Mar 31 2020 15:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47266 * 2 1 4 4 C 1.53006 * 109.46924 * 239.99981 * 2 1 3 5 5 H 1.08995 * 109.46954 * 304.10754 * 4 2 1 6 6 C 1.52999 * 109.47091 * 184.10817 * 4 2 1 7 7 O 1.42900 * 109.47457 * 62.21539 * 6 4 2 8 8 C 1.53001 * 109.47316 * 64.10680 * 4 2 1 9 9 N 1.46494 * 109.47352 * 185.00043 * 8 4 2 10 10 S 1.65596 * 119.99919 * 164.99881 * 9 8 4 11 11 O 1.42108 * 106.40157 * 178.53886 * 10 9 8 12 12 O 1.42101 * 106.40518 * 311.45844 * 10 9 8 13 13 C 1.76203 * 107.21959 * 65.00209 * 10 9 8 14 14 C 1.38656 * 119.86792 * 269.72556 * 13 10 9 15 15 C 1.38620 * 120.49154 * 179.72234 * 14 13 10 16 16 C 1.37638 * 120.25268 * 0.54848 * 15 14 13 17 17 C 1.40693 * 119.74245 * 359.73052 * 16 15 14 18 18 C 1.41395 * 120.24619 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00287 * 153.82745 * 18 17 16 20 20 C 1.39952 * 119.99534 * 333.83428 * 18 17 16 21 21 N 1.30826 * 119.99377 * 159.38396 * 20 18 17 22 22 Si 1.86796 * 120.00266 * 339.38101 * 20 18 17 23 23 H 1.48497 * 109.47197 * 95.20476 * 22 20 18 24 24 H 1.48497 * 109.47017 * 215.20843 * 22 20 18 25 25 H 1.48507 * 109.46943 * 335.20703 * 22 20 18 26 26 C 1.37591 * 119.87595 * 89.99811 * 13 10 9 27 27 H 1.08994 * 109.47091 * 54.14036 * 1 2 3 28 28 H 1.09004 * 109.47290 * 174.13915 * 1 2 3 29 29 H 1.08994 * 109.46875 * 294.13850 * 1 2 3 30 30 H 1.09004 * 109.47294 * 120.00531 * 2 1 3 31 31 H 1.09002 * 109.47015 * 299.99801 * 3 2 1 32 32 H 1.08991 * 109.47118 * 59.99887 * 3 2 1 33 33 H 1.09002 * 109.47260 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47259 * 182.21767 * 6 4 2 35 35 H 1.09007 * 109.46976 * 302.21823 * 6 4 2 36 36 H 0.96700 * 113.99701 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.46705 * 305.00029 * 8 4 2 38 38 H 1.08999 * 109.46867 * 64.99599 * 8 4 2 39 39 H 0.97000 * 119.99733 * 345.00044 * 9 8 4 40 40 H 1.07989 * 119.75849 * 359.97438 * 14 13 10 41 41 H 1.08006 * 119.86888 * 180.25768 * 15 14 13 42 42 H 1.07997 * 120.12950 * 179.70270 * 16 15 14 43 43 H 0.96999 * 119.99359 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.13260 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.6178 -1.7254 -1.2868 6 6 3.5665 -0.8114 -1.1987 7 8 3.9608 -1.5824 -0.0620 8 6 1.6161 0.0571 -2.4964 9 7 1.9999 -0.6935 -3.6945 10 16 1.3531 -0.2925 -5.1653 11 8 1.9421 -1.1700 -6.1153 12 8 -0.0506 -0.1865 -4.9710 13 6 1.9242 1.3264 -5.5623 14 6 1.1865 2.4338 -5.1724 15 6 1.6266 3.7135 -5.4729 16 6 2.7973 3.8976 -6.1729 17 6 3.5510 2.7810 -6.5786 18 6 4.7555 2.9579 -7.2977 19 1 5.5291 2.2059 -7.2488 20 6 4.9453 4.1077 -8.0727 21 7 6.1547 4.4808 -8.4040 22 14 3.4720 5.1095 -8.6341 23 1 3.2399 6.2249 -7.6817 24 1 3.7350 5.6608 -9.9876 25 1 2.2697 4.2389 -8.6792 26 6 3.0974 1.4867 -6.2630 27 1 -0.3633 0.6020 -0.8328 28 1 -0.3634 -1.0223 -0.1049 29 1 -0.3633 0.4202 0.9378 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 3.9325 -1.2901 -2.1071 35 1 3.9873 0.1912 -1.1215 36 1 4.9180 -1.6809 0.0335 37 1 0.5353 0.1981 -2.4867 38 1 2.1092 1.0291 -2.5031 39 1 2.6328 -1.4253 -3.6262 40 1 0.2643 2.2986 -4.6270 41 1 1.0461 4.5691 -5.1607 42 1 3.1358 4.8954 -6.4101 43 1 6.2862 5.2775 -8.9415 44 1 3.6684 0.6226 -6.5692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588136114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:12 Heat of formation + Delta-G solvation = -125.857934 kcal Electronic energy + Delta-G solvation = -26489.411102 eV Core-core repulsion = 22725.729967 eV Total energy + Delta-G solvation = -3763.681135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.94241 -37.95093 -36.78143 -35.97571 -35.41873 -34.21463 -33.85525 -30.77707 -30.19855 -29.51390 -27.35873 -25.54406 -25.34824 -22.89590 -22.44738 -20.94869 -19.53792 -18.99529 -18.12745 -17.65183 -16.93641 -16.36502 -16.30029 -15.61213 -15.31540 -15.08615 -14.83473 -14.66519 -14.03736 -13.78924 -13.71876 -13.19489 -13.14535 -12.91080 -12.73038 -12.46915 -12.27764 -12.10049 -11.92878 -11.74290 -11.72269 -11.65013 -11.53509 -11.50010 -11.10224 -10.93825 -10.81411 -10.61661 -10.50608 -10.36978 -10.07358 -10.02617 -9.78194 -9.43501 -9.17708 -8.31872 -7.95155 -7.16997 -4.69114 0.87656 1.87882 2.38137 2.94872 3.08028 3.16694 3.41410 3.80033 3.98920 4.06629 4.27143 4.55123 4.58994 4.81283 4.89910 5.09086 5.12842 5.21855 5.27593 5.33497 5.47880 5.52623 5.57536 5.60914 5.77884 5.79369 5.82352 5.88893 5.98355 6.04644 6.09335 6.16027 6.25360 6.33150 6.42472 6.54178 6.80834 7.00155 7.10675 7.16291 7.36056 7.43537 7.56713 7.73381 8.11625 8.37960 8.55372 9.84369 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.003745 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.988517 B = 7474.635274 C = 7791.970380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 C -0.157 4.157 4 C -0.088 4.088 5 H 0.085 0.915 6 C 0.074 3.926 7 O -0.573 6.573 8 C 0.119 3.881 9 N -1.122 6.122 10 S 2.689 3.311 11 O -0.969 6.969 12 O -0.971 6.971 13 C -0.623 4.623 14 C -0.164 4.164 15 C -0.089 4.089 16 C -0.204 4.204 17 C 0.073 3.927 18 C -0.440 4.440 19 H 0.095 0.905 20 C 0.084 3.916 21 N -0.794 5.794 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.105 4.105 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.378 0.622 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.413 0.587 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.289 0.711 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 -5.465 14.092 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 C -0.214 4.214 4 C -0.108 4.108 5 H 0.103 0.897 6 C -0.004 4.004 7 O -0.378 6.378 8 C -0.007 4.007 9 N -0.881 5.881 10 S 2.784 3.216 11 O -0.959 6.959 12 O -0.961 6.961 13 C -0.714 4.714 14 C -0.185 4.185 15 C -0.108 4.108 16 C -0.223 4.223 17 C 0.069 3.931 18 C -0.468 4.468 19 H 0.113 0.887 20 C -0.137 4.137 21 N -0.417 5.417 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.214 1.214 25 H -0.166 1.166 26 C -0.126 4.126 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.225 0.775 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.247 0.753 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.100 -5.760 13.523 15.914 hybrid contribution 0.942 1.082 -0.378 1.484 sum -5.158 -4.678 13.144 14.875 Atomic orbital electron populations 1.21955 0.95143 1.02054 1.02003 1.21030 0.95598 0.96217 0.97578 1.22008 1.01288 0.95898 1.02189 1.21374 0.94389 1.00579 0.94411 0.89652 1.22315 0.95116 0.95006 0.87943 1.86434 1.28060 1.75269 1.48075 1.21456 1.01259 0.94900 0.83062 1.55630 1.62499 1.46397 1.23608 1.01706 0.73530 0.74455 0.71899 1.93558 1.78591 1.64722 1.59073 1.93520 1.29754 1.87435 1.85395 1.29923 1.07549 1.19704 1.14208 1.20038 0.99847 0.91696 1.06874 1.20687 0.95927 0.95962 0.98245 1.21273 0.98504 0.97919 1.04647 1.17769 0.92316 0.90985 0.91992 1.19550 0.99988 1.04185 1.23032 0.88689 1.26199 0.97181 0.96202 0.94083 1.69694 1.22951 1.21817 1.27246 0.86357 0.82759 0.80041 0.77342 1.19417 1.21364 1.16633 1.20795 0.94185 0.97548 1.00107 0.92080 0.92553 0.92650 0.90049 0.91949 0.92671 0.92434 0.93378 0.92734 0.77488 0.89425 0.90742 0.75268 0.87093 0.87951 0.87665 0.90068 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.78 37.16 0.33 -1.05 16 2 C -0.09 -0.80 2.63 -90.62 -0.24 -1.04 16 3 C -0.16 -1.44 8.47 37.16 0.31 -1.13 16 4 C -0.09 -0.88 2.01 -90.62 -0.18 -1.07 16 5 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 6 C 0.07 0.71 6.14 37.16 0.23 0.94 16 7 O -0.57 -5.32 13.01 -35.23 -0.46 -5.77 16 8 C 0.12 1.40 4.83 -4.04 -0.02 1.38 16 9 N -1.12 -14.73 5.87 -10.62 -0.06 -14.79 16 10 S 2.69 47.08 5.74 -107.50 -0.62 46.47 16 11 O -0.97 -19.40 17.27 -57.17 -0.99 -20.38 16 12 O -0.97 -18.60 16.73 -57.17 -0.96 -19.55 16 13 C -0.62 -12.57 5.94 -39.66 -0.24 -12.81 16 14 C -0.16 -3.23 9.53 -39.29 -0.37 -3.60 16 15 C -0.09 -1.81 10.02 -39.66 -0.40 -2.21 16 16 C -0.20 -4.65 7.25 -38.87 -0.28 -4.93 16 17 C 0.07 1.78 5.18 -106.82 -0.55 1.23 16 18 C -0.44 -11.34 9.57 -37.74 -0.36 -11.70 16 19 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.08 2.10 5.39 -17.34 -0.09 2.01 16 21 N -0.79 -20.11 13.93 55.55 0.77 -19.34 16 22 Si 0.91 19.84 24.50 -169.99 -4.16 15.68 16 23 H -0.27 -5.59 6.63 56.52 0.37 -5.22 16 24 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 25 H -0.24 -5.51 6.90 56.52 0.39 -5.12 16 26 C -0.11 -2.37 9.26 -38.87 -0.36 -2.73 16 27 H 0.06 0.56 6.73 -51.93 -0.35 0.21 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.80 7.63 -51.93 -0.40 0.41 16 31 H 0.06 0.60 6.47 -51.93 -0.34 0.26 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.53 6.49 -51.93 -0.34 0.19 16 34 H 0.05 0.44 6.85 -51.93 -0.36 0.09 16 35 H 0.05 0.51 6.43 -51.92 -0.33 0.18 16 36 H 0.38 2.01 9.12 45.56 0.42 2.43 16 37 H 0.09 1.03 6.05 -51.93 -0.31 0.72 16 38 H 0.07 0.88 6.66 -51.93 -0.35 0.53 16 39 H 0.41 4.56 7.39 -34.47 -0.25 4.31 16 40 H 0.11 1.94 7.59 -52.49 -0.40 1.54 16 41 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.11 2.36 4.40 -52.49 -0.23 2.13 16 43 H 0.29 6.58 8.30 -40.82 -0.34 6.25 16 44 H 0.12 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -30.87 359.06 -8.63 -39.50 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -5.34 Total: 9.48 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: -2.23 Total: -36.70 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.71 Total: -34.13 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -2.40 Total: -45.71 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.16 Total: 15.68 kcal Atomic # 16 Polarization: 47.08 SS G_CDS: -0.62 Total: 46.47 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.87 -8.63 -39.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588136114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.355 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds