Wall clock time and date at job start Tue Mar 31 2020 15:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47266 * 2 1 4 4 C 1.53006 * 109.46924 * 239.99981 * 2 1 3 5 5 H 1.08995 * 109.46954 * 304.10754 * 4 2 1 6 6 C 1.52999 * 109.47091 * 184.10817 * 4 2 1 7 7 O 1.42900 * 109.47457 * 62.21539 * 6 4 2 8 8 C 1.53001 * 109.47316 * 64.10680 * 4 2 1 9 9 N 1.46494 * 109.47352 * 185.00043 * 8 4 2 10 10 S 1.65596 * 119.99919 * 164.99881 * 9 8 4 11 11 O 1.42108 * 106.40157 * 178.53886 * 10 9 8 12 12 O 1.42101 * 106.40518 * 311.45844 * 10 9 8 13 13 C 1.76203 * 107.21959 * 65.00209 * 10 9 8 14 14 C 1.38656 * 119.86792 * 269.72556 * 13 10 9 15 15 C 1.38620 * 120.49154 * 179.72234 * 14 13 10 16 16 C 1.37638 * 120.25268 * 0.54848 * 15 14 13 17 17 C 1.40693 * 119.74245 * 359.73052 * 16 15 14 18 18 C 1.41395 * 120.24619 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00287 * 153.82745 * 18 17 16 20 20 C 1.39952 * 119.99534 * 333.83428 * 18 17 16 21 21 N 1.30826 * 119.99377 * 159.38396 * 20 18 17 22 22 Si 1.86796 * 120.00266 * 339.38101 * 20 18 17 23 23 H 1.48497 * 109.47197 * 95.20476 * 22 20 18 24 24 H 1.48497 * 109.47017 * 215.20843 * 22 20 18 25 25 H 1.48507 * 109.46943 * 335.20703 * 22 20 18 26 26 C 1.37591 * 119.87595 * 89.99811 * 13 10 9 27 27 H 1.08994 * 109.47091 * 54.14036 * 1 2 3 28 28 H 1.09004 * 109.47290 * 174.13915 * 1 2 3 29 29 H 1.08994 * 109.46875 * 294.13850 * 1 2 3 30 30 H 1.09004 * 109.47294 * 120.00531 * 2 1 3 31 31 H 1.09002 * 109.47015 * 299.99801 * 3 2 1 32 32 H 1.08991 * 109.47118 * 59.99887 * 3 2 1 33 33 H 1.09002 * 109.47260 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47259 * 182.21767 * 6 4 2 35 35 H 1.09007 * 109.46976 * 302.21823 * 6 4 2 36 36 H 0.96700 * 113.99701 * 180.02562 * 7 6 4 37 37 H 1.09001 * 109.46705 * 305.00029 * 8 4 2 38 38 H 1.08999 * 109.46867 * 64.99599 * 8 4 2 39 39 H 0.97000 * 119.99733 * 345.00044 * 9 8 4 40 40 H 1.07989 * 119.75849 * 359.97438 * 14 13 10 41 41 H 1.08006 * 119.86888 * 180.25768 * 15 14 13 42 42 H 1.07997 * 120.12950 * 179.70270 * 16 15 14 43 43 H 0.96999 * 119.99359 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.13260 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 1.6178 -1.7254 -1.2868 6 6 3.5665 -0.8114 -1.1987 7 8 3.9608 -1.5824 -0.0620 8 6 1.6161 0.0571 -2.4964 9 7 1.9999 -0.6935 -3.6945 10 16 1.3531 -0.2925 -5.1653 11 8 1.9421 -1.1700 -6.1153 12 8 -0.0506 -0.1865 -4.9710 13 6 1.9242 1.3264 -5.5623 14 6 1.1865 2.4338 -5.1724 15 6 1.6266 3.7135 -5.4729 16 6 2.7973 3.8976 -6.1729 17 6 3.5510 2.7810 -6.5786 18 6 4.7555 2.9579 -7.2977 19 1 5.5291 2.2059 -7.2488 20 6 4.9453 4.1077 -8.0727 21 7 6.1547 4.4808 -8.4040 22 14 3.4720 5.1095 -8.6341 23 1 3.2399 6.2249 -7.6817 24 1 3.7350 5.6608 -9.9876 25 1 2.2697 4.2389 -8.6792 26 6 3.0974 1.4867 -6.2630 27 1 -0.3633 0.6020 -0.8328 28 1 -0.3634 -1.0223 -0.1049 29 1 -0.3633 0.4202 0.9378 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4425 -0.0005 34 1 3.9325 -1.2901 -2.1071 35 1 3.9873 0.1912 -1.1215 36 1 4.9180 -1.6809 0.0335 37 1 0.5353 0.1981 -2.4867 38 1 2.1092 1.0291 -2.5031 39 1 2.6328 -1.4253 -3.6262 40 1 0.2643 2.2986 -4.6270 41 1 1.0461 4.5691 -5.1607 42 1 3.1358 4.8954 -6.4101 43 1 6.2862 5.2775 -8.9415 44 1 3.6684 0.6226 -6.5692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588136114.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:11 Heat of formation + Delta-G solvation = -149.683509 kcal Electronic energy + Delta-G solvation = -26490.444257 eV Core-core repulsion = 22725.729967 eV Total energy + Delta-G solvation = -3764.714289 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.77217 -39.65399 -38.28734 -36.94270 -36.74266 -35.67301 -35.18680 -32.54944 -31.88417 -30.34417 -28.06928 -27.26067 -26.35264 -24.12544 -23.66239 -22.67859 -20.82309 -20.04116 -19.68856 -18.56399 -18.19711 -18.06244 -17.35035 -17.09122 -16.65065 -16.32169 -16.18313 -15.72415 -15.47811 -14.93294 -14.76273 -14.66120 -14.56737 -14.05549 -13.91240 -13.59341 -13.48164 -13.43742 -13.38372 -13.19866 -13.09043 -12.91921 -12.85917 -12.75321 -12.53267 -12.33526 -12.02226 -11.81156 -11.69074 -11.52816 -11.34937 -11.30415 -11.05363 -10.74836 -10.40280 -10.00751 -9.71571 -9.00863 -6.59855 -0.55751 0.18686 0.65444 1.19926 1.36020 1.42535 2.01348 2.08045 2.40298 2.73608 3.25902 3.31536 3.43934 3.75315 3.86236 4.08284 4.18010 4.30313 4.34039 4.43676 4.43981 4.45464 4.56538 4.64056 4.68162 4.76030 4.76763 4.84992 4.88400 5.01158 5.05324 5.10471 5.15625 5.24641 5.33946 5.35148 5.44439 5.53419 5.59664 5.63674 5.75337 5.98562 6.05164 6.23014 6.57775 6.68025 6.91043 8.06915 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.003745 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.988517 B = 7474.635274 C = 7791.970380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 C -0.157 4.157 4 C -0.084 4.084 5 H 0.085 0.915 6 C 0.072 3.928 7 O -0.584 6.584 8 C 0.112 3.888 9 N -1.106 6.106 10 S 2.717 3.283 11 O -0.995 6.995 12 O -0.980 6.980 13 C -0.630 4.630 14 C -0.147 4.147 15 C -0.092 4.092 16 C -0.211 4.211 17 C 0.056 3.944 18 C -0.481 4.481 19 H 0.062 0.938 20 C 0.051 3.949 21 N -0.835 5.835 22 Si 0.957 3.043 23 H -0.248 1.248 24 H -0.274 1.274 25 H -0.257 1.257 26 C -0.126 4.126 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.395 0.605 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.424 0.576 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.297 0.703 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 -5.022 15.942 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.099 4.099 3 C -0.215 4.215 4 C -0.104 4.104 5 H 0.104 0.896 6 C -0.006 4.006 7 O -0.392 6.392 8 C -0.013 4.013 9 N -0.870 5.870 10 S 2.809 3.191 11 O -0.985 6.985 12 O -0.970 6.970 13 C -0.718 4.718 14 C -0.167 4.167 15 C -0.111 4.111 16 C -0.231 4.231 17 C 0.052 3.948 18 C -0.510 4.510 19 H 0.081 0.919 20 C -0.165 4.165 21 N -0.460 5.460 22 Si 0.780 3.220 23 H -0.173 1.173 24 H -0.201 1.201 25 H -0.181 1.181 26 C -0.146 4.146 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.244 0.756 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.262 0.738 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.478 -5.297 15.373 18.338 hybrid contribution 1.567 0.790 -0.734 1.902 sum -6.912 -4.506 14.639 16.804 Atomic orbital electron populations 1.21970 0.94681 1.02166 1.02445 1.20981 0.95942 0.96118 0.96887 1.22016 1.01193 0.95814 1.02433 1.21341 0.94844 1.00400 0.93838 0.89629 1.22297 0.94827 0.95193 0.88239 1.86390 1.29854 1.75142 1.47831 1.21681 1.01707 0.95123 0.82822 1.55275 1.62603 1.46582 1.22497 1.00883 0.73008 0.72989 0.72205 1.93523 1.79012 1.64957 1.61057 1.93507 1.30399 1.87234 1.85859 1.30395 1.06405 1.21935 1.13095 1.20588 1.00107 0.91309 1.04693 1.21147 0.95207 0.97735 0.96995 1.21472 0.99241 0.97540 1.04824 1.17927 0.92263 0.92385 0.92216 1.19524 1.00672 1.04720 1.26076 0.91947 1.26810 0.99250 0.96788 0.93696 1.69714 1.24263 1.23094 1.28899 0.85626 0.79271 0.79094 0.77975 1.17261 1.20086 1.18056 1.20833 0.95442 0.96950 1.01407 0.92298 0.92486 0.91722 0.90344 0.92279 0.91854 0.92644 0.93188 0.92676 0.75571 0.88925 0.90484 0.73834 0.83906 0.83946 0.87433 0.89199 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 8.78 71.98 0.63 -1.74 16 2 C -0.08 -1.32 2.63 -10.79 -0.03 -1.34 16 3 C -0.16 -2.54 8.47 71.98 0.61 -1.93 16 4 C -0.08 -1.51 2.01 -10.79 -0.02 -1.53 16 5 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 6 C 0.07 1.25 6.14 71.98 0.44 1.69 16 7 O -0.58 -9.75 13.01 -148.98 -1.94 -11.68 16 8 C 0.11 2.35 4.83 86.38 0.42 2.76 16 9 N -1.11 -26.76 5.87 -187.50 -1.10 -27.86 16 10 S 2.72 90.16 5.74 -56.49 -0.32 89.84 16 11 O -1.00 -39.07 17.27 -128.00 -2.21 -41.28 16 12 O -0.98 -34.75 16.73 -128.00 -2.14 -36.89 16 13 C -0.63 -24.39 5.94 22.22 0.13 -24.26 16 14 C -0.15 -5.28 9.53 22.46 0.21 -5.07 16 15 C -0.09 -3.43 10.02 22.22 0.22 -3.21 16 16 C -0.21 -9.35 7.25 22.73 0.16 -9.19 16 17 C 0.06 2.74 5.18 -21.29 -0.11 2.63 16 18 C -0.48 -26.11 9.57 23.46 0.22 -25.88 16 19 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 20 C 0.05 2.64 5.39 85.26 0.46 3.10 16 21 N -0.83 -43.88 13.93 21.83 0.30 -43.57 16 22 Si 0.96 40.63 24.50 68.60 1.68 42.31 16 23 H -0.25 -9.60 6.63 99.48 0.66 -8.94 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.26 -11.32 6.90 99.48 0.69 -10.63 16 26 C -0.13 -5.70 9.26 22.73 0.21 -5.49 16 27 H 0.06 0.92 6.73 -2.39 -0.02 0.91 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.37 7.63 -2.38 -0.02 1.35 16 31 H 0.06 0.99 6.47 -2.39 -0.02 0.97 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 0.91 6.49 -2.39 -0.02 0.90 16 34 H 0.05 0.83 6.85 -2.39 -0.02 0.82 16 35 H 0.06 0.95 6.43 -2.38 -0.02 0.93 16 36 H 0.39 3.51 9.12 -74.06 -0.68 2.83 16 37 H 0.09 1.89 6.05 -2.39 -0.01 1.88 16 38 H 0.08 1.61 6.66 -2.39 -0.02 1.59 16 39 H 0.42 8.60 7.39 -96.75 -0.72 7.88 16 40 H 0.14 4.28 7.59 -2.92 -0.02 4.26 16 41 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 42 H 0.11 4.66 4.40 -2.91 -0.01 4.65 16 43 H 0.30 13.94 8.30 -92.71 -0.77 13.17 16 44 H 0.11 5.11 7.60 -2.91 -0.02 5.08 16 Total: -1.00 -66.78 359.06 -2.58 -69.36 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.42 Total: 29.23 kcal Atomic # 6 Polarization: -73.03 SS G_CDS: 3.57 Total: -69.46 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -0.80 Total: -71.43 kcal Atomic # 8 Polarization: -83.56 SS G_CDS: -6.29 Total: -89.85 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.68 Total: 42.31 kcal Atomic # 16 Polarization: 90.16 SS G_CDS: -0.32 Total: 89.84 kcal Total: -66.78 -2.58 -69.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588136114.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.325 kcal (2) G-P(sol) polarization free energy of solvation -66.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds