Wall clock time and date at job start Tue Mar 31 2020 14:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 S 1.76204 * 119.97176 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40193 * 23.51529 * 8 7 6 10 10 O 1.42097 * 106.40122 * 156.43705 * 8 7 6 11 11 N 1.65604 * 107.21661 * 269.98080 * 8 7 6 12 12 C 1.46496 * 120.00138 * 64.99738 * 11 8 7 13 13 C 1.53003 * 109.47106 * 165.00146 * 12 11 8 14 14 C 1.52998 * 109.46920 * 300.00320 * 13 12 11 15 15 C 1.53000 * 109.47024 * 59.99762 * 13 12 11 16 16 C 1.52998 * 109.47347 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47087 * 179.97438 * 16 13 12 18 18 H 1.07997 * 120.00201 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99784 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00413 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99809 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46866 * 90.00116 * 21 19 17 23 23 H 1.48502 * 109.46874 * 210.00025 * 21 19 17 24 24 H 1.48502 * 109.47308 * 329.99925 * 21 19 17 25 25 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 29 29 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 30 30 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 31 31 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 32 32 H 0.97005 * 119.99431 * 245.00241 * 11 8 7 33 33 H 1.09000 * 109.47568 * 284.99933 * 12 11 8 34 34 H 1.08992 * 109.47308 * 45.00259 * 12 11 8 35 35 H 1.08994 * 109.47484 * 59.99954 * 14 13 12 36 36 H 1.09004 * 109.47141 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47089 * 299.99284 * 14 13 12 38 38 H 1.09006 * 109.47297 * 60.00378 * 15 13 12 39 39 H 1.09001 * 109.47205 * 180.02562 * 15 13 12 40 40 H 1.08994 * 109.47408 * 300.00064 * 15 13 12 41 41 H 1.09003 * 109.46694 * 300.00070 * 16 13 12 42 42 H 1.08997 * 109.46825 * 59.99810 * 16 13 12 43 43 H 0.96996 * 120.00598 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.02917 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 16 5.8154 2.6120 0.0002 9 8 6.1488 3.8817 0.5442 10 8 6.2832 1.3858 0.5450 11 7 6.3049 2.6380 -1.5816 12 6 5.9482 3.7700 -2.4403 13 6 6.8098 3.7426 -3.7044 14 6 8.2866 3.8417 -3.3172 15 6 6.5670 2.4338 -4.4588 16 6 6.4377 4.9252 -4.6010 17 6 7.2867 4.8986 -5.8457 18 1 8.0182 4.1162 -5.9837 19 6 7.1288 5.8725 -6.8088 20 7 6.2377 6.8250 -6.6410 21 14 8.1809 5.8391 -8.3521 22 1 7.4959 5.0414 -9.4008 23 1 8.3869 7.2262 -8.8408 24 1 9.4960 5.2232 -8.0416 25 6 3.4311 1.2849 -0.0001 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2128 2.3203 -0.0106 30 1 1.3339 4.5114 0.0011 31 1 3.7922 4.6381 0.0002 32 1 6.8279 1.9035 -1.9395 33 1 4.8960 3.6994 -2.7162 34 1 6.1211 4.7023 -1.9029 35 1 8.5520 2.9994 -2.6783 36 1 8.9004 3.8226 -4.2178 37 1 8.4596 4.7741 -2.7798 38 1 5.5149 2.3632 -4.7347 39 1 7.1812 2.4141 -5.3591 40 1 6.8325 1.5916 -3.8199 41 1 5.3854 4.8550 -4.8768 42 1 6.6109 5.8574 -4.0633 43 1 6.1269 7.5104 -7.3183 44 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588142857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:59 Heat of formation + Delta-G solvation = -99.021880 kcal Electronic energy + Delta-G solvation = -26122.700326 eV Core-core repulsion = 22360.182890 eV Total energy + Delta-G solvation = -3762.517436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.41341 -37.80169 -37.65973 -37.11368 -35.79431 -33.56735 -31.90885 -31.63320 -30.56326 -27.67523 -27.03658 -26.45759 -25.85025 -23.40940 -22.81121 -22.67370 -19.68106 -18.73818 -18.38421 -17.21086 -16.70379 -16.44102 -16.34719 -16.20906 -16.09568 -15.60256 -14.59750 -14.54537 -14.17734 -14.08600 -13.91050 -13.39440 -13.16785 -12.91362 -12.80960 -12.43703 -12.28574 -12.08826 -12.03264 -11.95462 -11.85408 -11.59411 -11.56588 -11.22437 -11.00045 -10.88258 -10.83705 -10.61560 -10.40079 -10.24287 -9.90013 -9.66092 -9.27284 -9.15757 -8.90796 -8.59800 -8.36328 -6.00928 -4.01476 0.34642 0.62743 1.08730 2.86717 3.02003 3.30801 3.32990 3.38009 3.40484 3.80039 4.34600 4.43906 4.46319 4.56129 4.71420 4.76365 4.88685 5.04478 5.10664 5.18836 5.29597 5.35123 5.54630 5.57530 5.74481 5.79487 5.84962 5.90888 5.98949 6.14347 6.23770 6.26534 6.35158 6.41271 6.67825 6.70206 7.00036 7.06430 7.09845 7.14901 7.19781 7.62479 7.75536 7.98115 8.40903 9.03225 9.61722 11.10584 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003170 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.680194 B = 8830.271639 C = 9598.026531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.104 3.896 4 C -0.156 4.156 5 C -0.099 4.099 6 C -0.055 4.055 7 C -0.636 4.636 8 S 2.695 3.305 9 O -0.953 6.953 10 O -0.964 6.964 11 N -1.108 6.108 12 C 0.123 3.877 13 C -0.065 4.065 14 C -0.129 4.129 15 C -0.128 4.128 16 C 0.034 3.966 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.050 4.050 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.418 0.582 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.031 0.969 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.259 0.741 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 -10.859 13.809 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.058 3.942 4 C -0.175 4.175 5 C -0.118 4.118 6 C -0.075 4.075 7 C -0.721 4.721 8 S 2.783 3.217 9 O -0.943 6.943 10 O -0.955 6.955 11 N -0.871 5.871 12 C -0.003 4.003 13 C -0.067 4.067 14 C -0.186 4.186 15 C -0.186 4.186 16 C -0.003 4.003 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.070 4.070 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.255 0.745 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.038 0.962 43 H 0.069 0.931 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.700 -10.712 14.539 20.990 hybrid contribution -0.467 -0.095 -1.454 1.530 sum -11.167 -10.807 13.085 20.315 Atomic orbital electron populations 1.23100 0.78190 1.04260 1.01405 1.86103 1.21512 1.26370 1.88853 1.19029 0.92363 0.84523 0.98269 1.21550 1.00393 0.92533 1.03035 1.21123 0.94640 0.97445 0.98590 1.20948 0.94254 0.97414 0.94849 1.31023 1.27656 0.98446 1.14981 1.01879 0.73361 0.73635 0.72829 1.93597 1.81729 1.42383 1.76593 1.93576 1.79441 1.45694 1.76749 1.55465 1.68670 1.32213 1.30709 1.21623 0.99140 0.86979 0.92508 1.20811 0.94438 0.98629 0.92789 1.21764 0.96107 0.99834 1.00922 1.21768 1.01531 0.95111 1.00161 1.19128 0.96853 0.91035 0.93330 1.21198 1.19995 1.10567 1.03052 0.92212 1.25000 0.95493 0.95642 0.98338 1.69950 1.34422 1.14293 1.34866 0.86656 0.80873 0.77155 0.83661 1.20828 1.21367 1.19920 1.20108 0.91990 0.97140 0.97763 0.92448 0.87967 0.92597 0.84780 0.84571 0.83702 0.74508 0.92099 0.90419 0.94825 0.91568 0.93227 0.93401 0.91423 0.94981 0.96403 0.96204 0.93082 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.29 10.50 -19.44 -0.20 -3.49 16 3 C 0.10 1.18 6.69 -39.22 -0.26 0.92 16 4 C -0.16 -1.51 9.04 -39.43 -0.36 -1.87 16 5 C -0.10 -0.99 10.04 -39.60 -0.40 -1.39 16 6 C -0.06 -0.65 9.52 -39.56 -0.38 -1.03 16 7 C -0.64 -8.09 5.94 -39.61 -0.24 -8.33 16 8 S 2.69 37.38 5.74 -107.50 -0.62 36.76 16 9 O -0.95 -15.58 16.75 -57.17 -0.96 -16.54 16 10 O -0.96 -15.03 17.28 -57.17 -0.99 -16.02 16 11 N -1.11 -15.02 5.33 -10.62 -0.06 -15.08 16 12 C 0.12 1.93 5.11 -4.04 -0.02 1.91 16 13 C -0.06 -1.20 0.55 -154.51 -0.08 -1.28 16 14 C -0.13 -2.30 8.05 37.16 0.30 -2.01 16 15 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 16 C 0.03 0.81 4.04 -27.89 -0.11 0.70 16 17 C -0.51 -13.29 7.65 -34.44 -0.26 -13.56 16 18 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 21 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.05 -0.62 9.46 -39.44 -0.37 -1.00 16 26 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 29 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 30 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.15 1.59 7.61 -52.49 -0.40 1.19 16 32 H 0.42 5.14 6.47 -34.47 -0.22 4.92 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.24 7.75 -51.93 -0.40 0.84 16 35 H 0.03 0.51 7.19 -51.93 -0.37 0.13 16 36 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 40 H 0.03 0.45 6.60 -51.93 -0.34 0.10 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.15 1.71 7.62 -52.48 -0.40 1.31 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -33.20 368.16 -8.90 -42.10 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.35 Total: 2.14 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -0.99 Total: -26.23 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.68 Total: -40.24 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -2.15 Total: -36.05 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 37.38 SS G_CDS: -0.62 Total: 36.76 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.20 -8.90 -42.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588142857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.926 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds