Wall clock time and date at job start Tue Mar 31 2020 14:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 S 1.76204 * 119.97176 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40193 * 23.51529 * 8 7 6 10 10 O 1.42097 * 106.40122 * 156.43705 * 8 7 6 11 11 N 1.65604 * 107.21661 * 269.98080 * 8 7 6 12 12 C 1.46496 * 120.00138 * 64.99738 * 11 8 7 13 13 C 1.53003 * 109.47106 * 165.00146 * 12 11 8 14 14 C 1.52998 * 109.46920 * 300.00320 * 13 12 11 15 15 C 1.53000 * 109.47024 * 59.99762 * 13 12 11 16 16 C 1.52998 * 109.47347 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47087 * 179.97438 * 16 13 12 18 18 H 1.07997 * 120.00201 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99784 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00413 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99809 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46866 * 90.00116 * 21 19 17 23 23 H 1.48502 * 109.46874 * 210.00025 * 21 19 17 24 24 H 1.48502 * 109.47308 * 329.99925 * 21 19 17 25 25 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 29 29 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 30 30 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 31 31 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 32 32 H 0.97005 * 119.99431 * 245.00241 * 11 8 7 33 33 H 1.09000 * 109.47568 * 284.99933 * 12 11 8 34 34 H 1.08992 * 109.47308 * 45.00259 * 12 11 8 35 35 H 1.08994 * 109.47484 * 59.99954 * 14 13 12 36 36 H 1.09004 * 109.47141 * 180.02562 * 14 13 12 37 37 H 1.09000 * 109.47089 * 299.99284 * 14 13 12 38 38 H 1.09006 * 109.47297 * 60.00378 * 15 13 12 39 39 H 1.09001 * 109.47205 * 180.02562 * 15 13 12 40 40 H 1.08994 * 109.47408 * 300.00064 * 15 13 12 41 41 H 1.09003 * 109.46694 * 300.00070 * 16 13 12 42 42 H 1.08997 * 109.46825 * 59.99810 * 16 13 12 43 43 H 0.96996 * 120.00598 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.02917 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 16 5.8154 2.6120 0.0002 9 8 6.1488 3.8817 0.5442 10 8 6.2832 1.3858 0.5450 11 7 6.3049 2.6380 -1.5816 12 6 5.9482 3.7700 -2.4403 13 6 6.8098 3.7426 -3.7044 14 6 8.2866 3.8417 -3.3172 15 6 6.5670 2.4338 -4.4588 16 6 6.4377 4.9252 -4.6010 17 6 7.2867 4.8986 -5.8457 18 1 8.0182 4.1162 -5.9837 19 6 7.1288 5.8725 -6.8088 20 7 6.2377 6.8250 -6.6410 21 14 8.1809 5.8391 -8.3521 22 1 7.4959 5.0414 -9.4008 23 1 8.3869 7.2262 -8.8408 24 1 9.4960 5.2232 -8.0416 25 6 3.4311 1.2849 -0.0001 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.2128 2.3203 -0.0106 30 1 1.3339 4.5114 0.0011 31 1 3.7922 4.6381 0.0002 32 1 6.8279 1.9035 -1.9395 33 1 4.8960 3.6994 -2.7162 34 1 6.1211 4.7023 -1.9029 35 1 8.5520 2.9994 -2.6783 36 1 8.9004 3.8226 -4.2178 37 1 8.4596 4.7741 -2.7798 38 1 5.5149 2.3632 -4.7347 39 1 7.1812 2.4141 -5.3591 40 1 6.8325 1.5916 -3.8199 41 1 5.3854 4.8550 -4.8768 42 1 6.6109 5.8574 -4.0633 43 1 6.1269 7.5104 -7.3183 44 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588142857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:58 Heat of formation + Delta-G solvation = -121.763546 kcal Electronic energy + Delta-G solvation = -26123.686479 eV Core-core repulsion = 22360.182890 eV Total energy + Delta-G solvation = -3763.503589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17152 -39.19774 -38.49281 -38.31508 -36.99945 -35.22068 -33.64384 -32.45767 -31.35338 -28.93676 -28.22409 -27.89093 -27.24478 -24.63124 -24.24890 -23.54471 -20.68964 -19.91986 -19.62737 -18.43396 -18.30930 -17.52732 -17.28042 -17.14096 -16.77849 -16.71797 -16.45874 -15.76862 -15.53076 -14.96306 -14.91198 -14.66713 -14.41269 -14.06197 -13.87964 -13.86539 -13.64794 -13.29805 -13.26468 -13.18253 -12.90775 -12.89144 -12.66445 -12.59004 -12.36803 -12.25709 -12.20260 -12.14860 -11.92934 -11.79361 -11.47996 -10.92171 -10.81270 -10.51400 -10.46106 -10.36804 -9.40848 -8.10396 -6.16178 -0.69894 -0.30041 0.25215 1.43586 1.44778 1.54265 1.93748 2.23926 2.41782 2.47170 2.73815 3.24483 3.33193 3.66481 3.88616 3.95616 4.04330 4.12711 4.17399 4.27219 4.37390 4.37705 4.39405 4.52943 4.69991 4.77165 4.78822 4.82754 4.91681 4.96125 5.04603 5.10618 5.19452 5.19699 5.24739 5.49611 5.52655 5.57150 5.59201 5.63415 5.88232 5.95918 6.09306 6.29393 6.38372 6.98577 7.50744 9.01686 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.003170 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.680194 B = 8830.271639 C = 9598.026531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.097 3.903 4 C -0.150 4.150 5 C -0.098 4.098 6 C -0.074 4.074 7 C -0.641 4.641 8 S 2.714 3.286 9 O -0.981 6.981 10 O -0.982 6.982 11 N -1.101 6.101 12 C 0.131 3.869 13 C -0.062 4.062 14 C -0.128 4.128 15 C -0.125 4.125 16 C 0.039 3.961 17 C -0.513 4.513 18 H 0.067 0.933 19 C -0.001 4.001 20 N -0.935 5.935 21 Si 0.952 3.048 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.265 1.265 25 C -0.071 4.071 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.147 0.853 32 H 0.425 0.575 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.066 0.934 41 H -0.004 1.004 42 H -0.008 1.008 43 H 0.259 0.741 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 -12.214 14.015 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.051 3.949 4 C -0.168 4.168 5 C -0.117 4.117 6 C -0.093 4.093 7 C -0.729 4.729 8 S 2.805 3.195 9 O -0.971 6.971 10 O -0.972 6.972 11 N -0.865 5.865 12 C 0.005 3.995 13 C -0.064 4.064 14 C -0.185 4.185 15 C -0.183 4.183 16 C 0.001 3.999 17 C -0.551 4.551 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.576 5.576 21 Si 0.778 3.222 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.189 1.189 25 C -0.091 4.091 26 H 0.086 0.914 27 H 0.138 0.862 28 H 0.089 0.911 29 H 0.185 0.815 30 H 0.183 0.817 31 H 0.165 0.835 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.014 0.986 42 H 0.010 0.990 43 H 0.068 0.932 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.707 -12.094 14.746 22.378 hybrid contribution -0.270 0.283 -1.465 1.516 sum -11.977 -11.811 13.281 21.433 Atomic orbital electron populations 1.23437 0.75974 1.05988 1.02602 1.86086 1.23849 1.26066 1.88681 1.19171 0.92223 0.85566 0.97981 1.21939 1.02041 0.91649 1.01204 1.21499 0.94041 0.98893 0.97259 1.21169 0.95439 0.97188 0.95528 1.30647 1.26310 0.99183 1.16795 1.01059 0.73661 0.72509 0.72294 1.93558 1.82756 1.43592 1.77206 1.93547 1.80375 1.46247 1.77055 1.55254 1.69161 1.31799 1.30248 1.21385 0.99121 0.87540 0.91462 1.20659 0.95319 0.97160 0.93229 1.21739 0.95349 1.00723 1.00695 1.21720 1.01176 0.95414 0.99945 1.19000 0.95213 0.92184 0.93482 1.21616 1.19773 1.10156 1.03602 0.91486 1.25836 0.96808 0.95561 1.01614 1.70083 1.36311 1.15237 1.36006 0.85646 0.79581 0.76984 0.80019 1.20207 1.21561 1.18890 1.20217 0.93043 0.96954 0.98904 0.91389 0.86196 0.91129 0.81518 0.81705 0.83547 0.73645 0.91117 0.90984 0.91765 0.93015 0.94171 0.93556 0.93056 0.91520 0.98588 0.98988 0.93220 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.34 10.50 -92.48 -0.97 -7.31 16 3 C 0.10 2.04 6.69 22.50 0.15 2.19 16 4 C -0.15 -2.49 9.04 22.37 0.20 -2.28 16 5 C -0.10 -1.74 10.04 22.26 0.22 -1.52 16 6 C -0.07 -1.67 9.52 22.28 0.21 -1.46 16 7 C -0.64 -15.95 5.94 22.25 0.13 -15.81 16 8 S 2.71 74.31 5.74 -56.49 -0.32 73.98 16 9 O -0.98 -32.15 16.75 -128.00 -2.14 -34.29 16 10 O -0.98 -30.19 17.28 -128.00 -2.21 -32.40 16 11 N -1.10 -28.73 5.33 -187.50 -1.00 -29.73 16 12 C 0.13 4.05 5.11 86.38 0.44 4.49 16 13 C -0.06 -2.26 0.55 -52.18 -0.03 -2.29 16 14 C -0.13 -4.48 8.05 71.98 0.58 -3.90 16 15 C -0.13 -4.11 8.05 71.98 0.58 -3.53 16 16 C 0.04 1.89 4.04 29.85 0.12 2.01 16 17 C -0.51 -27.03 7.65 25.60 0.20 -26.83 16 18 H 0.07 3.37 5.68 -2.91 -0.02 3.35 16 19 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 20 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 21 Si 0.95 43.27 29.54 68.60 2.03 45.29 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 25 C -0.07 -1.72 9.46 22.36 0.21 -1.51 16 26 H 0.07 0.50 7.65 -2.39 -0.02 0.48 16 27 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.46 7.67 -2.39 -0.02 0.44 16 29 H 0.17 1.57 6.30 -2.91 -0.02 1.55 16 30 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.15 3.17 7.61 -2.91 -0.02 3.14 16 32 H 0.43 9.67 6.47 -96.74 -0.63 9.04 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 35 H 0.06 1.83 7.19 -2.39 -0.02 1.81 16 36 H 0.05 1.94 6.62 -2.39 -0.02 1.93 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 40 H 0.07 1.71 6.60 -2.39 -0.02 1.69 16 41 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.15 3.39 7.62 -2.91 -0.02 3.37 16 Total: -1.00 -72.08 368.16 0.64 -71.44 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.39 Total: 16.77 kcal Atomic # 6 Polarization: -53.39 SS G_CDS: 4.60 Total: -48.79 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -0.71 Total: -84.69 kcal Atomic # 8 Polarization: -68.68 SS G_CDS: -5.33 Total: -74.00 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: 74.31 SS G_CDS: -0.32 Total: 73.98 kcal Total: -72.08 0.64 -71.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588142857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.326 kcal (2) G-P(sol) polarization free energy of solvation -72.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds