Wall clock time and date at job start Tue Mar 31 2020 15:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99878 * 2 1 4 4 C 1.53009 * 109.46822 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47042 * 60.00593 * 4 3 2 6 6 C 1.52995 * 109.47181 * 300.00080 * 4 3 2 7 7 N 1.46499 * 109.46764 * 180.02562 * 4 3 2 8 8 C 1.46509 * 119.99969 * 353.03704 * 7 4 3 9 9 S 1.65592 * 119.99980 * 173.04215 * 7 4 3 10 10 O 1.42101 * 106.40355 * 149.59768 * 9 7 4 11 11 O 1.42104 * 106.40509 * 16.67880 * 9 7 4 12 12 C 1.76199 * 107.21993 * 263.13661 * 9 7 4 13 13 C 1.38661 * 119.87881 * 275.55954 * 12 9 7 14 14 C 1.38607 * 120.50378 * 180.25683 * 13 12 9 15 15 C 1.37647 * 120.24669 * 359.43876 * 14 13 12 16 16 C 1.40692 * 119.74370 * 0.27554 * 15 14 13 17 17 C 1.41393 * 120.24387 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00453 * 206.83258 * 17 16 15 19 19 C 1.39948 * 119.99732 * 26.84395 * 17 16 15 20 20 N 1.30826 * 120.00214 * 12.25803 * 19 17 16 21 21 Si 1.86800 * 119.99890 * 192.26073 * 19 17 16 22 22 H 1.48501 * 109.47245 * 94.98230 * 21 19 17 23 23 H 1.48497 * 109.47079 * 214.97769 * 21 19 17 24 24 H 1.48500 * 109.47392 * 334.98115 * 21 19 17 25 25 C 1.37604 * 119.87578 * 95.25572 * 12 9 7 26 26 H 1.09000 * 109.47012 * 60.00258 * 1 2 3 27 27 H 1.09008 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47438 * 299.99783 * 1 2 3 29 29 H 1.09003 * 109.46997 * 60.00398 * 3 2 1 30 30 H 1.08992 * 109.47479 * 299.99735 * 3 2 1 31 31 H 1.09000 * 109.46944 * 185.38745 * 5 4 3 32 32 H 1.09005 * 109.46911 * 305.38679 * 5 4 3 33 33 H 1.08999 * 109.47252 * 65.38496 * 5 4 3 34 34 H 1.09000 * 109.47640 * 296.23401 * 6 4 3 35 35 H 1.09000 * 109.47107 * 56.23920 * 6 4 3 36 36 H 1.09002 * 109.47089 * 176.24011 * 6 4 3 37 37 H 1.08996 * 109.46964 * 270.00058 * 8 7 4 38 38 H 1.08998 * 109.46907 * 30.00486 * 8 7 4 39 39 H 1.09002 * 109.46498 * 150.00389 * 8 7 4 40 40 H 1.07999 * 119.74738 * 359.97438 * 13 12 9 41 41 H 1.08000 * 119.87857 * 179.71816 * 14 13 12 42 42 H 1.08001 * 120.12618 * 180.25846 * 15 14 13 43 43 H 0.96993 * 119.99933 * 180.02562 * 20 19 17 44 44 H 1.07991 * 120.12605 * 0.04680 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9864 0.4256 1.2501 7 7 4.1313 2.5230 0.0013 8 6 3.2787 3.7045 -0.1526 9 16 5.7685 2.7004 0.1758 10 8 6.1229 3.8771 -0.5377 11 8 6.3408 1.4274 -0.0915 12 6 6.0781 3.0378 1.8772 13 6 5.9810 4.3368 2.3525 14 6 6.2271 4.6177 3.6874 15 6 6.5599 3.6057 4.5590 16 6 6.6556 2.2831 4.0891 17 6 6.9972 1.2355 4.9751 18 1 7.4846 0.3479 4.5995 19 6 6.7035 1.3486 6.3387 20 7 5.9086 2.2984 6.7600 21 14 7.4465 0.1434 7.5572 22 1 8.6834 0.7254 8.1375 23 1 6.4705 -0.1276 8.6431 24 1 7.7764 -1.1255 6.8600 25 6 6.4094 2.0104 2.7305 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 5.0631 0.2555 -1.2009 32 1 3.4701 -0.5329 -1.2980 33 1 3.7510 1.0122 -2.1358 34 1 3.7234 0.9995 2.1387 35 1 3.4909 -0.5447 1.2845 36 1 5.0663 0.2811 1.2175 37 1 3.1816 3.9470 -1.2108 38 1 2.2933 3.4982 0.2649 39 1 3.7273 4.5471 0.3736 40 1 5.7161 5.1364 1.6766 41 1 6.1530 5.6338 4.0458 42 1 6.7471 3.8262 5.5995 43 1 5.7053 2.3770 7.7052 44 1 6.4804 0.9989 2.3591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589932534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:24 Heat of formation + Delta-G solvation = -93.923292 kcal Electronic energy + Delta-G solvation = -27341.435267 eV Core-core repulsion = 23579.138922 eV Total energy + Delta-G solvation = -3762.296345 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.02130 -37.65262 -36.89590 -36.49505 -35.28246 -33.82612 -31.90961 -30.07765 -29.83209 -27.87411 -26.97119 -26.00018 -25.47833 -25.05707 -21.86884 -21.00322 -20.41542 -18.43989 -17.66399 -16.91780 -16.61795 -15.99722 -15.94876 -15.63769 -15.21696 -14.91952 -14.72209 -14.20637 -14.08177 -13.47320 -13.39492 -13.26350 -12.88603 -12.62595 -12.48774 -12.31405 -12.14479 -11.90367 -11.79980 -11.55097 -11.45859 -11.41469 -11.33109 -11.19933 -11.11144 -10.97425 -10.95491 -10.86867 -10.59605 -10.17416 -9.82638 -9.72609 -9.55223 -9.39570 -8.77939 -8.01137 -7.67373 -6.87728 -4.54560 0.97219 2.19681 2.62858 3.01063 3.05021 3.06761 3.31723 3.77229 3.84379 4.26440 4.42840 4.75117 4.88196 4.90350 5.10901 5.16501 5.20362 5.24882 5.40481 5.43153 5.50874 5.52757 5.68495 5.79741 5.81779 5.99495 6.03545 6.12217 6.13491 6.23078 6.28102 6.60773 6.63655 6.73188 6.76884 6.80878 6.93303 7.05380 7.08993 7.22484 7.37676 7.72188 7.82777 7.95167 8.41773 8.68642 8.72566 10.06690 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.004580 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.711031 B = 6112.202267 C = 7200.443167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.067 3.933 4 C 0.190 3.810 5 C -0.177 4.177 6 C -0.184 4.184 7 N -0.997 5.997 8 C 0.087 3.913 9 S 2.690 3.310 10 O -0.974 6.974 11 O -0.964 6.964 12 C -0.634 4.634 13 C -0.146 4.146 14 C -0.123 4.123 15 C -0.114 4.114 16 C 0.090 3.910 17 C -0.459 4.459 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.802 5.802 21 Si 0.913 3.087 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.118 4.118 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.128 0.872 43 H 0.282 0.718 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.657 -0.856 -8.548 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.011 4.011 4 C 0.104 3.896 5 C -0.236 4.236 6 C -0.243 4.243 7 N -0.835 5.835 8 C -0.058 4.058 9 S 2.788 3.212 10 O -0.964 6.964 11 O -0.954 6.954 12 C -0.726 4.726 13 C -0.168 4.168 14 C -0.142 4.142 15 C -0.134 4.134 16 C 0.087 3.913 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.144 4.144 20 N -0.428 5.428 21 Si 0.738 3.262 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.139 4.139 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.093 0.907 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.087 -1.009 -9.046 12.862 hybrid contribution -0.335 0.060 1.514 1.552 sum -9.422 -0.949 -7.532 12.100 Atomic orbital electron populations 1.22733 0.81081 1.02711 0.99882 1.87855 1.19440 1.27349 1.95379 1.22732 0.92978 0.84811 1.00558 1.19938 0.91392 0.81118 0.97196 1.22529 1.04721 1.00547 0.95765 1.22591 1.04178 1.01341 0.96143 1.57709 1.26057 1.10786 1.88931 1.21511 0.96032 0.86709 1.01543 1.01775 0.71383 0.73006 0.75085 1.93507 1.81175 1.49809 1.71958 1.93468 1.75485 1.41409 1.85077 1.29800 1.18985 1.01357 1.22444 1.20060 1.07471 0.93325 0.95896 1.20819 1.01896 0.98005 0.93519 1.21723 0.99958 0.92004 0.99693 1.17705 0.89643 0.92919 0.91059 1.19634 1.34342 1.03219 0.91647 0.89959 1.25914 0.92958 0.96063 0.99454 1.69747 1.26131 1.29663 1.17223 0.86200 0.79501 0.81007 0.79508 1.19315 1.20197 1.18385 1.20879 1.02737 0.95994 0.94339 0.94264 0.89596 0.94035 0.92333 0.92719 0.89029 0.90655 0.92910 0.91288 0.90198 0.89656 0.92577 0.91005 0.90823 0.87964 0.88424 0.85425 0.90717 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.70 9.20 -35.23 -0.32 -5.02 16 3 C 0.07 0.82 3.49 37.16 0.13 0.95 16 4 C 0.19 2.81 0.86 -131.82 -0.11 2.70 16 5 C -0.18 -2.53 8.36 37.16 0.31 -2.22 16 6 C -0.18 -3.03 7.59 37.15 0.28 -2.75 16 7 N -1.00 -15.61 3.07 -107.75 -0.33 -15.94 16 8 C 0.09 1.10 9.51 59.85 0.57 1.67 16 9 S 2.69 51.95 4.89 -107.50 -0.53 51.43 16 10 O -0.97 -20.36 16.74 -57.17 -0.96 -21.32 16 11 O -0.96 -19.73 12.18 -57.17 -0.70 -20.43 16 12 C -0.63 -13.85 5.96 -39.66 -0.24 -14.09 16 13 C -0.15 -3.16 9.53 -39.29 -0.37 -3.54 16 14 C -0.12 -2.74 10.02 -39.66 -0.40 -3.14 16 15 C -0.11 -2.82 8.68 -38.87 -0.34 -3.16 16 16 C 0.09 2.31 5.57 -106.83 -0.59 1.71 16 17 C -0.46 -11.67 9.07 -37.74 -0.34 -12.01 16 18 H 0.08 2.02 7.88 -52.49 -0.41 1.61 16 19 C 0.07 1.75 5.24 -17.34 -0.09 1.66 16 20 N -0.80 -19.72 10.79 55.55 0.60 -19.12 16 21 Si 0.91 18.10 29.58 -169.99 -5.03 13.07 16 22 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 C -0.12 -2.80 8.45 -38.87 -0.33 -3.13 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.69 7.21 -51.93 -0.37 0.32 16 30 H 0.05 0.57 7.55 -51.93 -0.39 0.18 16 31 H 0.09 1.47 5.75 -51.93 -0.30 1.17 16 32 H 0.07 0.99 7.53 -51.93 -0.39 0.60 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.08 1.21 7.57 -51.93 -0.39 0.81 16 36 H 0.08 1.54 4.23 -51.93 -0.22 1.33 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.74 5.68 -51.93 -0.30 0.44 16 39 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 40 H 0.10 1.98 7.73 -52.49 -0.41 1.57 16 41 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.13 3.22 6.13 -52.49 -0.32 2.90 16 43 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 44 H 0.12 2.61 6.06 -52.49 -0.32 2.30 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -29.38 357.56 -8.61 -37.99 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.33 Total: 7.88 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: -0.41 Total: -33.94 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.27 Total: -35.06 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.98 Total: -46.77 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 51.95 SS G_CDS: -0.53 Total: 51.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.38 -8.61 -37.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589932534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.934 kcal (2) G-P(sol) polarization free energy of solvation -29.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds