Wall clock time and date at job start Tue Mar 31 2020 15:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99878 * 2 1 4 4 C 1.53009 * 109.46822 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47042 * 60.00593 * 4 3 2 6 6 C 1.52995 * 109.47181 * 300.00080 * 4 3 2 7 7 N 1.46499 * 109.46764 * 180.02562 * 4 3 2 8 8 C 1.46509 * 119.99969 * 353.03704 * 7 4 3 9 9 S 1.65592 * 119.99980 * 173.04215 * 7 4 3 10 10 O 1.42101 * 106.40355 * 149.59768 * 9 7 4 11 11 O 1.42104 * 106.40509 * 16.67880 * 9 7 4 12 12 C 1.76199 * 107.21993 * 263.13661 * 9 7 4 13 13 C 1.38661 * 119.87881 * 275.55954 * 12 9 7 14 14 C 1.38607 * 120.50378 * 180.25683 * 13 12 9 15 15 C 1.37647 * 120.24669 * 359.43876 * 14 13 12 16 16 C 1.40692 * 119.74370 * 0.27554 * 15 14 13 17 17 C 1.41393 * 120.24387 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00453 * 206.83258 * 17 16 15 19 19 C 1.39948 * 119.99732 * 26.84395 * 17 16 15 20 20 N 1.30826 * 120.00214 * 12.25803 * 19 17 16 21 21 Si 1.86800 * 119.99890 * 192.26073 * 19 17 16 22 22 H 1.48501 * 109.47245 * 94.98230 * 21 19 17 23 23 H 1.48497 * 109.47079 * 214.97769 * 21 19 17 24 24 H 1.48500 * 109.47392 * 334.98115 * 21 19 17 25 25 C 1.37604 * 119.87578 * 95.25572 * 12 9 7 26 26 H 1.09000 * 109.47012 * 60.00258 * 1 2 3 27 27 H 1.09008 * 109.46941 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47438 * 299.99783 * 1 2 3 29 29 H 1.09003 * 109.46997 * 60.00398 * 3 2 1 30 30 H 1.08992 * 109.47479 * 299.99735 * 3 2 1 31 31 H 1.09000 * 109.46944 * 185.38745 * 5 4 3 32 32 H 1.09005 * 109.46911 * 305.38679 * 5 4 3 33 33 H 1.08999 * 109.47252 * 65.38496 * 5 4 3 34 34 H 1.09000 * 109.47640 * 296.23401 * 6 4 3 35 35 H 1.09000 * 109.47107 * 56.23920 * 6 4 3 36 36 H 1.09002 * 109.47089 * 176.24011 * 6 4 3 37 37 H 1.08996 * 109.46964 * 270.00058 * 8 7 4 38 38 H 1.08998 * 109.46907 * 30.00486 * 8 7 4 39 39 H 1.09002 * 109.46498 * 150.00389 * 8 7 4 40 40 H 1.07999 * 119.74738 * 359.97438 * 13 12 9 41 41 H 1.08000 * 119.87857 * 179.71816 * 14 13 12 42 42 H 1.08001 * 120.12618 * 180.25846 * 15 14 13 43 43 H 0.96993 * 119.99933 * 180.02562 * 20 19 17 44 44 H 1.07991 * 120.12605 * 0.04680 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9874 0.4253 -1.2483 6 6 3.9864 0.4256 1.2501 7 7 4.1313 2.5230 0.0013 8 6 3.2787 3.7045 -0.1526 9 16 5.7685 2.7004 0.1758 10 8 6.1229 3.8771 -0.5377 11 8 6.3408 1.4274 -0.0915 12 6 6.0781 3.0378 1.8772 13 6 5.9810 4.3368 2.3525 14 6 6.2271 4.6177 3.6874 15 6 6.5599 3.6057 4.5590 16 6 6.6556 2.2831 4.0891 17 6 6.9972 1.2355 4.9751 18 1 7.4846 0.3479 4.5995 19 6 6.7035 1.3486 6.3387 20 7 5.9086 2.2984 6.7600 21 14 7.4465 0.1434 7.5572 22 1 8.6834 0.7254 8.1375 23 1 6.4705 -0.1276 8.6431 24 1 7.7764 -1.1255 6.8600 25 6 6.4094 2.0104 2.7305 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 5.0631 0.2555 -1.2009 32 1 3.4701 -0.5329 -1.2980 33 1 3.7510 1.0122 -2.1358 34 1 3.7234 0.9995 2.1387 35 1 3.4909 -0.5447 1.2845 36 1 5.0663 0.2811 1.2175 37 1 3.1816 3.9470 -1.2108 38 1 2.2933 3.4982 0.2649 39 1 3.7273 4.5471 0.3736 40 1 5.7161 5.1364 1.6766 41 1 6.1530 5.6338 4.0458 42 1 6.7471 3.8262 5.5995 43 1 5.7053 2.3770 7.7052 44 1 6.4804 0.9989 2.3591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589932534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:24 Heat of formation + Delta-G solvation = -112.266362 kcal Electronic energy + Delta-G solvation = -27342.230682 eV Core-core repulsion = 23579.138922 eV Total energy + Delta-G solvation = -3763.091760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.08154 -39.44880 -38.36603 -37.60495 -36.88398 -35.64781 -33.07361 -31.89950 -31.62239 -28.78047 -28.20104 -27.33165 -26.89227 -26.08157 -23.63559 -22.80747 -21.65458 -20.09440 -19.22403 -18.03551 -17.89290 -17.74891 -17.02698 -16.81057 -16.70593 -16.50858 -16.12325 -15.38786 -15.25898 -15.13621 -15.05661 -14.45843 -14.31980 -13.85487 -13.75635 -13.64444 -13.48093 -13.40711 -13.14546 -13.07381 -13.03744 -12.93493 -12.77183 -12.67227 -12.46981 -12.41881 -12.22545 -12.18462 -12.14435 -11.57070 -11.35374 -11.26141 -11.17958 -10.61689 -10.05176 -9.78202 -9.52490 -8.68334 -6.46007 -0.55014 0.41326 0.84298 1.37468 1.45190 1.50536 1.95867 2.18269 2.58629 2.72698 2.87569 3.43320 3.49469 3.64628 3.84127 4.03513 4.07620 4.29389 4.38947 4.41891 4.53667 4.61256 4.63820 4.68018 4.72411 4.77729 4.87008 4.90066 4.91513 4.92591 4.93641 4.99963 5.05667 5.08922 5.21601 5.38186 5.42002 5.51209 5.56326 5.68353 5.88583 5.96283 6.11206 6.24076 6.54116 6.81675 6.85597 8.28291 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.004580 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.711031 B = 6112.202267 C = 7200.443167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.072 3.928 4 C 0.186 3.814 5 C -0.176 4.176 6 C -0.183 4.183 7 N -0.989 5.989 8 C 0.072 3.928 9 S 2.710 3.290 10 O -0.986 6.986 11 O -0.979 6.979 12 C -0.642 4.642 13 C -0.146 4.146 14 C -0.125 4.125 15 C -0.137 4.137 16 C 0.061 3.939 17 C -0.496 4.496 18 H 0.076 0.924 19 C 0.037 3.963 20 N -0.828 5.828 21 Si 0.983 3.017 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.132 4.132 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.116 0.884 43 H 0.290 0.710 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.442 -0.478 -9.511 14.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C -0.006 4.006 4 C 0.099 3.901 5 C -0.234 4.234 6 C -0.241 4.241 7 N -0.830 5.830 8 C -0.072 4.072 9 S 2.805 3.195 10 O -0.977 6.977 11 O -0.970 6.970 12 C -0.731 4.731 13 C -0.167 4.167 14 C -0.144 4.144 15 C -0.157 4.157 16 C 0.058 3.942 17 C -0.525 4.525 18 H 0.094 0.906 19 C -0.178 4.178 20 N -0.454 5.454 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.190 1.190 24 H -0.184 1.184 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.134 0.866 43 H 0.101 0.899 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.867 -0.605 -9.989 14.773 hybrid contribution 0.117 -0.026 1.694 1.698 sum -10.750 -0.630 -8.295 13.593 Atomic orbital electron populations 1.22937 0.79198 1.03896 1.00919 1.87821 1.21459 1.27338 1.95590 1.22660 0.90631 0.85314 1.01951 1.20050 0.93501 0.80257 0.96265 1.22494 1.03307 1.01424 0.96186 1.22546 1.02805 1.02057 0.96702 1.57453 1.24937 1.12341 1.88253 1.21904 0.96646 0.85281 1.03418 1.01183 0.72398 0.72270 0.73655 1.93485 1.82238 1.50446 1.71500 1.93456 1.76836 1.41926 1.84738 1.30314 1.17588 1.01097 1.24134 1.20459 1.06177 0.93960 0.96088 1.21148 1.00716 0.98868 0.93649 1.21719 1.01760 0.92499 0.99684 1.18049 0.90434 0.93590 0.92106 1.19845 1.36091 1.03513 0.93071 0.90558 1.26688 0.92812 0.97772 1.00507 1.69787 1.26658 1.30922 1.18065 0.85172 0.78857 0.78530 0.77107 1.18662 1.19032 1.18421 1.20909 1.03605 0.96576 0.94231 0.92554 0.88483 0.93602 0.91971 0.90181 0.91308 0.89593 0.91150 0.92910 0.89294 0.91900 0.90247 0.88307 0.91070 0.85215 0.85524 0.86630 0.89918 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.91 9.20 -148.98 -1.37 -10.28 16 3 C 0.07 1.55 3.49 71.99 0.25 1.81 16 4 C 0.19 5.20 0.86 3.60 0.00 5.20 16 5 C -0.18 -4.73 8.36 71.98 0.60 -4.13 16 6 C -0.18 -6.07 7.59 71.98 0.55 -5.53 16 7 N -0.99 -29.22 3.07 -494.82 -1.52 -30.73 16 8 C 0.07 1.58 9.51 127.77 1.22 2.79 16 9 S 2.71 103.08 4.89 -56.49 -0.28 102.81 16 10 O -0.99 -39.78 16.74 -128.00 -2.14 -41.93 16 11 O -0.98 -40.54 12.18 -128.00 -1.56 -42.10 16 12 C -0.64 -28.25 5.96 22.22 0.13 -28.12 16 13 C -0.15 -6.20 9.53 22.46 0.21 -5.99 16 14 C -0.12 -5.54 10.02 22.22 0.22 -5.32 16 15 C -0.14 -6.96 8.68 22.73 0.20 -6.77 16 16 C 0.06 3.27 5.57 -21.29 -0.12 3.15 16 17 C -0.50 -26.37 9.07 23.46 0.21 -26.16 16 18 H 0.08 3.97 7.88 -2.91 -0.02 3.95 16 19 C 0.04 1.80 5.24 85.26 0.45 2.25 16 20 N -0.83 -41.65 10.79 21.83 0.24 -41.42 16 21 Si 0.98 37.58 29.58 68.60 2.03 39.61 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 25 C -0.13 -6.51 8.45 22.73 0.19 -6.31 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 1.29 7.21 -2.39 -0.02 1.27 16 30 H 0.08 1.33 7.55 -2.39 -0.02 1.31 16 31 H 0.07 2.19 5.75 -2.39 -0.01 2.17 16 32 H 0.09 2.11 7.53 -2.38 -0.02 2.09 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 2.71 7.57 -2.39 -0.02 2.69 16 36 H 0.06 2.36 4.23 -2.39 -0.01 2.35 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 1.65 5.68 -2.39 -0.01 1.64 16 39 H 0.07 1.62 7.96 -2.39 -0.02 1.60 16 40 H 0.13 4.73 7.73 -2.91 -0.02 4.71 16 41 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 42 H 0.12 6.06 6.13 -2.91 -0.02 6.05 16 43 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 44 H 0.11 5.40 6.06 -2.92 -0.02 5.38 16 Total: -1.00 -64.78 357.56 1.77 -63.01 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 1.00 Total: 32.52 kcal Atomic # 6 Polarization: -76.85 SS G_CDS: 5.37 Total: -71.49 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -1.28 Total: -72.15 kcal Atomic # 8 Polarization: -89.24 SS G_CDS: -5.07 Total: -94.31 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: 103.08 SS G_CDS: -0.28 Total: 102.81 kcal Total: -64.78 1.77 -63.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589932534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.252 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds