Wall clock time and date at job start Tue Mar 31 2020 15:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 H 1.09000 * 109.47021 * 305.00153 * 3 2 1 5 5 N 1.46501 * 109.46804 * 64.99871 * 3 2 1 6 6 S 1.65606 * 119.99901 * 215.00094 * 5 3 2 7 7 O 1.42100 * 106.39929 * 178.53978 * 6 5 3 8 8 O 1.42097 * 106.40273 * 311.46056 * 6 5 3 9 9 C 1.76204 * 107.21753 * 64.99944 * 6 5 3 10 10 C 1.38650 * 119.87641 * 269.73050 * 9 6 5 11 11 C 1.38609 * 120.50032 * 179.72680 * 10 9 6 12 12 C 1.37637 * 120.25127 * 0.54422 * 11 10 9 13 13 C 1.40705 * 119.74274 * 359.73219 * 12 11 10 14 14 C 1.41387 * 120.24465 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00154 * 150.21527 * 14 13 12 16 16 C 1.39942 * 120.00323 * 330.21516 * 14 13 12 17 17 N 1.30821 * 120.00368 * 161.72795 * 16 14 13 18 18 Si 1.86800 * 119.99904 * 341.72913 * 16 14 13 19 19 H 1.48504 * 109.47005 * 95.41006 * 18 16 14 20 20 H 1.48500 * 109.47480 * 215.41015 * 18 16 14 21 21 H 1.48497 * 109.47018 * 335.41296 * 18 16 14 22 22 C 1.37604 * 119.87133 * 90.00175 * 9 6 5 23 23 C 1.52995 * 109.47219 * 184.99641 * 3 2 1 24 24 C 1.53004 * 109.47100 * 185.00071 * 23 3 2 25 25 C 1.53003 * 109.46799 * 65.00080 * 23 3 2 26 26 O 1.42903 * 109.47253 * 305.00346 * 23 3 2 27 27 H 1.09000 * 109.47320 * 60.00265 * 1 2 3 28 28 H 1.09006 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47232 * 299.99690 * 1 2 3 30 30 H 1.08998 * 109.47229 * 239.99760 * 2 1 3 31 31 H 1.09004 * 109.46670 * 120.00045 * 2 1 3 32 32 H 0.97003 * 120.00481 * 34.99636 * 5 3 2 33 33 H 1.08004 * 119.74856 * 359.97438 * 10 9 6 34 34 H 1.08007 * 119.87518 * 180.25374 * 11 10 9 35 35 H 1.07998 * 120.13430 * 179.75219 * 12 11 10 36 36 H 0.97001 * 120.00550 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.13140 * 359.97438 * 22 9 6 38 38 H 1.08994 * 109.46916 * 180.02562 * 24 23 3 39 39 H 1.08994 * 109.47070 * 300.00389 * 24 23 3 40 40 H 1.09002 * 109.46973 * 60.00393 * 24 23 3 41 41 H 1.08991 * 109.47251 * 299.99888 * 25 23 3 42 42 H 1.09003 * 109.46997 * 60.00115 * 25 23 3 43 43 H 1.09004 * 109.46920 * 179.97438 * 25 23 3 44 44 H 0.96698 * 113.99747 * 180.02562 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 16 1.2557 3.7052 1.2568 7 8 0.8985 4.0262 2.5942 8 8 2.2874 4.3753 0.5458 9 6 -0.2092 3.8840 0.2940 10 6 -0.1152 4.1275 -1.0677 11 6 -1.2591 4.2647 -1.8384 12 6 -2.5027 4.1714 -1.2563 13 6 -2.6102 3.9301 0.1258 14 6 -3.8824 3.8318 0.7347 15 1 -4.0172 3.2084 1.6063 16 6 -4.9671 4.5421 0.2081 17 7 -6.1894 4.1967 0.5212 18 14 -4.6696 5.9837 -0.9420 19 1 -4.7567 5.5197 -2.3500 20 1 -5.6962 7.0293 -0.7010 21 1 -3.3195 6.5480 -0.6895 22 6 -1.4420 3.7869 0.8974 23 6 3.5648 1.4443 -0.1256 24 6 4.0851 2.8777 -0.0005 25 6 3.9649 0.8735 -1.4876 26 8 4.1293 0.6403 0.9122 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6281 1.5893 2.0778 33 1 0.8567 4.2070 -1.5321 34 1 -1.1741 4.4502 -2.8991 35 1 -3.3927 4.2825 -1.8579 36 1 -6.9413 4.6888 0.1560 37 1 -1.5129 3.6011 1.9589 38 1 5.1714 2.8790 -0.0905 39 1 3.6546 3.4909 -0.7921 40 1 3.8001 3.2843 0.9698 41 1 3.5943 -0.1476 -1.5768 42 1 3.5344 1.4867 -2.2793 43 1 5.0513 0.8752 -1.5773 44 1 5.0951 0.5962 0.8943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590169975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:05 Heat of formation + Delta-G solvation = -113.449137 kcal Electronic energy + Delta-G solvation = -27471.505283 eV Core-core repulsion = 23708.362234 eV Total energy + Delta-G solvation = -3763.143049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.18744 -37.94921 -36.73686 -35.43091 -35.36633 -33.80823 -31.69797 -31.67366 -30.75837 -30.18631 -27.21649 -25.86974 -25.40702 -22.42947 -21.69710 -20.96220 -20.37583 -19.29066 -18.11724 -17.04699 -16.56454 -16.37014 -16.13503 -15.50316 -15.14953 -14.92026 -14.60311 -14.13286 -13.91025 -13.78663 -13.56067 -13.15298 -12.90646 -12.60607 -12.44197 -12.40962 -12.27104 -11.99967 -11.89572 -11.81312 -11.65948 -11.52318 -11.28930 -11.07503 -11.02630 -10.95344 -10.83478 -10.69104 -10.66019 -10.31419 -10.02217 -9.86230 -9.78098 -9.37649 -9.10451 -8.29870 -7.90629 -7.11091 -4.66568 0.91757 1.89147 2.38618 2.97081 3.09692 3.18598 3.45388 3.83213 4.08310 4.17702 4.30855 4.58967 4.76178 4.86394 5.02731 5.12026 5.13660 5.29425 5.38047 5.54002 5.63938 5.68369 5.77522 5.81862 5.92815 5.96110 5.99727 6.05751 6.14716 6.16499 6.17697 6.42092 6.43475 6.53001 6.56223 6.65072 6.83924 7.03964 7.16665 7.23249 7.36077 7.59472 7.63067 7.74920 8.15853 8.40040 8.59045 9.90728 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.004136 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.834406 B = 6768.405764 C = 6969.170077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.122 4.122 3 C 0.173 3.827 4 H 0.099 0.901 5 N -1.105 6.105 6 S 2.680 3.320 7 O -0.971 6.971 8 O -0.964 6.964 9 C -0.624 4.624 10 C -0.161 4.161 11 C -0.091 4.091 12 C -0.198 4.198 13 C 0.075 3.925 14 C -0.443 4.443 15 H 0.095 0.905 16 C 0.084 3.916 17 N -0.799 5.799 18 Si 0.906 3.094 19 H -0.268 1.268 20 H -0.286 1.286 21 H -0.243 1.243 22 C -0.101 4.101 23 C 0.109 3.891 24 C -0.176 4.176 25 C -0.180 4.180 26 O -0.555 6.555 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.417 0.583 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.288 0.712 37 H 0.118 0.882 38 H 0.044 0.956 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.175 -6.634 -4.191 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.161 4.161 3 C 0.065 3.935 4 H 0.116 0.884 5 N -0.862 5.862 6 S 2.775 3.225 7 O -0.962 6.962 8 O -0.954 6.954 9 C -0.715 4.715 10 C -0.182 4.182 11 C -0.111 4.111 12 C -0.218 4.218 13 C 0.071 3.929 14 C -0.470 4.470 15 H 0.113 0.887 16 C -0.136 4.136 17 N -0.423 5.423 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.213 1.213 21 H -0.167 1.167 22 C -0.122 4.122 23 C 0.067 3.933 24 C -0.234 4.234 25 C -0.238 4.238 26 O -0.361 6.361 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.251 0.749 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 14.703 -5.932 -3.712 16.283 hybrid contribution -0.219 0.304 -0.851 0.930 sum 14.484 -5.628 -4.562 16.195 Atomic orbital electron populations 1.21814 0.94921 1.01538 1.03147 1.21754 0.96381 0.94915 1.03036 1.20806 0.91126 0.95412 0.86178 0.88361 1.55494 1.84336 1.30415 1.15976 1.01949 0.74314 0.72543 0.73657 1.93553 1.84734 1.82104 1.35790 1.93616 1.54259 1.72810 1.74722 1.29965 1.16339 1.17453 1.07697 1.20030 0.97617 1.08833 0.91696 1.20689 0.92924 0.99429 0.98013 1.21291 0.96297 1.09158 0.95048 1.17779 0.93239 0.90655 0.91270 1.19525 0.90536 1.24274 1.12715 0.88678 1.26155 0.94223 0.98229 0.94973 1.69675 0.99669 1.35934 1.36977 0.86379 0.80137 0.80503 0.79793 1.19423 1.21307 1.16651 1.20839 0.90612 1.02450 0.98299 1.21769 0.94027 0.90782 0.86736 1.22826 0.99783 0.95161 1.05624 1.22539 1.01782 1.02078 0.97385 1.86534 1.24683 1.71784 1.53058 0.92266 0.92876 0.91992 0.91003 0.90631 0.74851 0.87159 0.87992 0.87676 0.90161 0.86382 0.93666 0.89743 0.90734 0.91483 0.91279 0.92241 0.78272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.80 37.16 0.36 -1.62 16 2 C -0.12 -1.36 5.11 -26.73 -0.14 -1.49 16 3 C 0.17 2.12 1.73 -67.93 -0.12 2.00 16 4 H 0.10 1.24 7.24 -51.93 -0.38 0.86 16 5 N -1.11 -15.23 4.34 -4.89 -0.02 -15.25 16 6 S 2.68 46.73 5.34 -107.50 -0.57 46.16 16 7 O -0.97 -19.90 17.27 -57.17 -0.99 -20.89 16 8 O -0.96 -17.14 11.92 -57.17 -0.68 -17.82 16 9 C -0.62 -12.48 5.81 -39.66 -0.23 -12.71 16 10 C -0.16 -3.10 8.92 -39.29 -0.35 -3.45 16 11 C -0.09 -1.84 10.02 -39.66 -0.40 -2.23 16 12 C -0.20 -4.50 7.18 -38.87 -0.28 -4.78 16 13 C 0.07 1.81 5.10 -106.82 -0.55 1.27 16 14 C -0.44 -11.49 9.57 -37.75 -0.36 -11.85 16 15 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 16 C 0.08 2.13 5.40 -17.34 -0.09 2.03 16 17 N -0.80 -20.51 13.93 55.55 0.77 -19.74 16 18 Si 0.91 19.98 24.52 -169.99 -4.17 15.81 16 19 H -0.27 -5.65 6.71 56.52 0.38 -5.27 16 20 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 21 H -0.24 -5.56 6.86 56.52 0.39 -5.17 16 22 C -0.10 -2.28 9.26 -38.87 -0.36 -2.64 16 23 C 0.11 1.19 0.86 -90.62 -0.08 1.11 16 24 C -0.18 -2.20 6.96 37.16 0.26 -1.94 16 25 C -0.18 -1.56 8.58 37.16 0.32 -1.25 16 26 O -0.56 -5.70 12.15 -35.23 -0.43 -6.13 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.86 7.75 -51.93 -0.40 0.45 16 30 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 31 H 0.08 0.84 7.73 -51.93 -0.40 0.44 16 32 H 0.42 5.21 8.84 -34.47 -0.30 4.90 16 33 H 0.11 1.85 7.59 -52.48 -0.40 1.45 16 34 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.11 2.36 4.73 -52.49 -0.25 2.11 16 36 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 37 H 0.12 2.60 7.60 -52.49 -0.40 2.20 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 1.14 6.97 -51.93 -0.36 0.78 16 40 H 0.07 1.07 5.45 -51.93 -0.28 0.79 16 41 H 0.07 0.55 6.46 -51.93 -0.34 0.21 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.37 2.51 9.05 45.56 0.41 2.92 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -29.82 355.33 -8.30 -38.12 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.56 Total: 11.93 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: -2.01 Total: -37.54 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.75 Total: -34.99 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -2.10 Total: -44.84 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.17 Total: 15.81 kcal Atomic # 16 Polarization: 46.73 SS G_CDS: -0.57 Total: 46.16 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.82 -8.30 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590169975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.331 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds