Wall clock time and date at job start Tue Mar 31 2020 15:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47277 * 2 1 4 4 H 1.09000 * 109.47021 * 305.00153 * 3 2 1 5 5 N 1.46501 * 109.46804 * 64.99871 * 3 2 1 6 6 S 1.65606 * 119.99901 * 215.00094 * 5 3 2 7 7 O 1.42100 * 106.39929 * 178.53978 * 6 5 3 8 8 O 1.42097 * 106.40273 * 311.46056 * 6 5 3 9 9 C 1.76204 * 107.21753 * 64.99944 * 6 5 3 10 10 C 1.38650 * 119.87641 * 269.73050 * 9 6 5 11 11 C 1.38609 * 120.50032 * 179.72680 * 10 9 6 12 12 C 1.37637 * 120.25127 * 0.54422 * 11 10 9 13 13 C 1.40705 * 119.74274 * 359.73219 * 12 11 10 14 14 C 1.41387 * 120.24465 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00154 * 150.21527 * 14 13 12 16 16 C 1.39942 * 120.00323 * 330.21516 * 14 13 12 17 17 N 1.30821 * 120.00368 * 161.72795 * 16 14 13 18 18 Si 1.86800 * 119.99904 * 341.72913 * 16 14 13 19 19 H 1.48504 * 109.47005 * 95.41006 * 18 16 14 20 20 H 1.48500 * 109.47480 * 215.41015 * 18 16 14 21 21 H 1.48497 * 109.47018 * 335.41296 * 18 16 14 22 22 C 1.37604 * 119.87133 * 90.00175 * 9 6 5 23 23 C 1.52995 * 109.47219 * 184.99641 * 3 2 1 24 24 C 1.53004 * 109.47100 * 185.00071 * 23 3 2 25 25 C 1.53003 * 109.46799 * 65.00080 * 23 3 2 26 26 O 1.42903 * 109.47253 * 305.00346 * 23 3 2 27 27 H 1.09000 * 109.47320 * 60.00265 * 1 2 3 28 28 H 1.09006 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47232 * 299.99690 * 1 2 3 30 30 H 1.08998 * 109.47229 * 239.99760 * 2 1 3 31 31 H 1.09004 * 109.46670 * 120.00045 * 2 1 3 32 32 H 0.97003 * 120.00481 * 34.99636 * 5 3 2 33 33 H 1.08004 * 119.74856 * 359.97438 * 10 9 6 34 34 H 1.08007 * 119.87518 * 180.25374 * 11 10 9 35 35 H 1.07998 * 120.13430 * 179.75219 * 12 11 10 36 36 H 0.97001 * 120.00550 * 180.02562 * 17 16 14 37 37 H 1.07997 * 120.13140 * 359.97438 * 22 9 6 38 38 H 1.08994 * 109.46916 * 180.02562 * 24 23 3 39 39 H 1.08994 * 109.47070 * 300.00389 * 24 23 3 40 40 H 1.09002 * 109.46973 * 60.00393 * 24 23 3 41 41 H 1.08991 * 109.47251 * 299.99888 * 25 23 3 42 42 H 1.09003 * 109.46997 * 60.00115 * 25 23 3 43 43 H 1.09004 * 109.46920 * 179.97438 * 25 23 3 44 44 H 0.96698 * 113.99747 * 180.02562 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 16 1.2557 3.7052 1.2568 7 8 0.8985 4.0262 2.5942 8 8 2.2874 4.3753 0.5458 9 6 -0.2092 3.8840 0.2940 10 6 -0.1152 4.1275 -1.0677 11 6 -1.2591 4.2647 -1.8384 12 6 -2.5027 4.1714 -1.2563 13 6 -2.6102 3.9301 0.1258 14 6 -3.8824 3.8318 0.7347 15 1 -4.0172 3.2084 1.6063 16 6 -4.9671 4.5421 0.2081 17 7 -6.1894 4.1967 0.5212 18 14 -4.6696 5.9837 -0.9420 19 1 -4.7567 5.5197 -2.3500 20 1 -5.6962 7.0293 -0.7010 21 1 -3.3195 6.5480 -0.6895 22 6 -1.4420 3.7869 0.8974 23 6 3.5648 1.4443 -0.1256 24 6 4.0851 2.8777 -0.0005 25 6 3.9649 0.8735 -1.4876 26 8 4.1293 0.6403 0.9122 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6281 1.5893 2.0778 33 1 0.8567 4.2070 -1.5321 34 1 -1.1741 4.4502 -2.8991 35 1 -3.3927 4.2825 -1.8579 36 1 -6.9413 4.6888 0.1560 37 1 -1.5129 3.6011 1.9589 38 1 5.1714 2.8790 -0.0905 39 1 3.6546 3.4909 -0.7921 40 1 3.8001 3.2843 0.9698 41 1 3.5943 -0.1476 -1.5768 42 1 3.5344 1.4867 -2.2793 43 1 5.0513 0.8752 -1.5773 44 1 5.0951 0.5962 0.8943 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590169975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:04 Heat of formation + Delta-G solvation = -136.080423 kcal Electronic energy + Delta-G solvation = -27472.486650 eV Core-core repulsion = 23708.362234 eV Total energy + Delta-G solvation = -3764.124415 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10117 -39.67447 -38.21126 -36.92433 -36.30779 -35.63768 -32.76203 -32.56767 -32.48277 -31.87466 -28.06765 -27.26317 -26.78379 -24.09952 -22.74028 -22.58687 -21.28958 -20.74175 -19.72958 -18.46202 -18.06344 -17.55852 -17.24219 -16.96278 -16.64257 -16.25801 -15.98531 -15.49471 -15.09856 -14.88768 -14.69417 -14.66733 -14.45621 -14.03857 -13.72394 -13.60812 -13.50345 -13.34559 -13.25738 -13.11339 -12.89390 -12.84219 -12.69342 -12.57007 -12.32893 -12.17241 -11.99779 -11.89617 -11.86337 -11.70388 -11.60027 -11.46221 -11.03011 -10.69687 -10.27643 -9.98337 -9.68149 -8.97320 -6.60034 -0.51589 0.19481 0.65323 1.19744 1.35302 1.42138 2.02904 2.10866 2.42275 2.77137 3.30224 3.39221 3.46113 3.68208 3.93521 4.15055 4.19837 4.22666 4.32628 4.36435 4.45021 4.46350 4.70190 4.76187 4.80135 4.81893 4.87152 4.90366 5.06735 5.07634 5.10047 5.15867 5.24834 5.34146 5.37686 5.43540 5.49893 5.53908 5.62766 5.67499 5.76304 5.99667 6.13060 6.24183 6.58487 6.69071 7.02797 8.11117 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019998 B = 0.004136 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.834406 B = 6768.405764 C = 6969.170077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.113 4.113 3 C 0.160 3.840 4 H 0.098 0.902 5 N -1.093 6.093 6 S 2.704 3.296 7 O -1.005 7.005 8 O -0.961 6.961 9 C -0.631 4.631 10 C -0.139 4.139 11 C -0.094 4.094 12 C -0.204 4.204 13 C 0.057 3.943 14 C -0.485 4.485 15 H 0.059 0.941 16 C 0.050 3.950 17 N -0.842 5.842 18 Si 0.956 3.044 19 H -0.246 1.246 20 H -0.275 1.275 21 H -0.256 1.256 22 C -0.123 4.123 23 C 0.116 3.884 24 C -0.181 4.181 25 C -0.177 4.177 26 O -0.565 6.565 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.424 0.576 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.108 0.892 36 H 0.296 0.704 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.387 -6.908 -6.927 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C 0.053 3.947 4 H 0.116 0.884 5 N -0.853 5.853 6 S 2.796 3.204 7 O -0.995 6.995 8 O -0.950 6.950 9 C -0.719 4.719 10 C -0.159 4.159 11 C -0.113 4.113 12 C -0.223 4.223 13 C 0.054 3.946 14 C -0.514 4.514 15 H 0.077 0.923 16 C -0.166 4.166 17 N -0.468 5.468 18 Si 0.779 3.221 19 H -0.171 1.171 20 H -0.201 1.201 21 H -0.180 1.180 22 C -0.144 4.144 23 C 0.074 3.926 24 C -0.239 4.239 25 C -0.235 4.235 26 O -0.373 6.373 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.260 0.740 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 17.904 -6.214 -6.463 20.023 hybrid contribution -0.901 0.282 -0.006 0.945 sum 17.002 -5.932 -6.469 19.134 Atomic orbital electron populations 1.21828 0.96413 1.01841 1.01563 1.21710 0.94829 0.94329 1.04265 1.21135 0.92763 0.95820 0.85011 0.88428 1.55214 1.83639 1.29214 1.17249 1.01287 0.73260 0.73372 0.72438 1.93509 1.85071 1.83365 1.37544 1.93634 1.53183 1.73678 1.74536 1.30449 1.16628 1.16079 1.08715 1.20613 0.99194 1.04930 0.91208 1.21169 0.91770 0.98062 1.00264 1.21489 0.97863 1.08708 0.94260 1.17909 0.92930 0.91350 0.92454 1.19479 0.92458 1.26405 1.13060 0.92314 1.26789 0.93721 0.99808 0.96260 1.69702 1.00402 1.37556 1.39133 0.85630 0.79378 0.77913 0.79223 1.17083 1.20096 1.18014 1.20826 0.91487 1.03997 0.98078 1.21614 0.92567 0.90201 0.88227 1.22825 1.01252 0.95955 1.03829 1.22522 1.03043 1.02311 0.95654 1.86499 1.26370 1.71387 1.53020 0.93347 0.91751 0.94044 0.88692 0.90365 0.73983 0.83571 0.83761 0.87425 0.89342 0.87536 0.91627 0.90717 0.93021 0.90691 0.91000 0.90545 0.76322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.80 71.98 0.71 -3.14 16 2 C -0.11 -2.20 5.11 30.59 0.16 -2.05 16 3 C 0.16 3.50 1.73 44.99 0.08 3.58 16 4 H 0.10 2.15 7.24 -2.39 -0.02 2.13 16 5 N -1.09 -28.66 4.34 -169.40 -0.74 -29.40 16 6 S 2.70 91.67 5.34 -56.49 -0.30 91.37 16 7 O -1.00 -41.54 17.27 -128.00 -2.21 -43.75 16 8 O -0.96 -32.04 11.92 -128.00 -1.53 -33.57 16 9 C -0.63 -24.66 5.81 22.22 0.13 -24.53 16 10 C -0.14 -4.93 8.92 22.46 0.20 -4.73 16 11 C -0.09 -3.46 10.02 22.22 0.22 -3.24 16 12 C -0.20 -9.04 7.18 22.73 0.16 -8.87 16 13 C 0.06 2.85 5.10 -21.29 -0.11 2.74 16 14 C -0.48 -26.89 9.57 23.46 0.22 -26.67 16 15 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 16 C 0.05 2.62 5.40 85.26 0.46 3.08 16 17 N -0.84 -45.35 13.93 21.83 0.30 -45.04 16 18 Si 0.96 41.26 24.52 68.60 1.68 42.94 16 19 H -0.25 -9.65 6.71 99.48 0.67 -8.99 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 H -0.26 -11.45 6.86 99.48 0.68 -10.77 16 22 C -0.12 -5.73 9.26 22.73 0.21 -5.52 16 23 C 0.12 2.13 0.86 -10.79 -0.01 2.12 16 24 C -0.18 -3.94 6.96 71.98 0.50 -3.44 16 25 C -0.18 -2.31 8.58 71.98 0.62 -1.70 16 26 O -0.56 -9.69 12.15 -148.98 -1.81 -11.50 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.04 1.15 7.75 -2.39 -0.02 1.13 16 30 H 0.09 1.47 6.34 -2.39 -0.02 1.45 16 31 H 0.08 1.53 7.73 -2.38 -0.02 1.51 16 32 H 0.42 10.21 8.84 -96.74 -0.85 9.36 16 33 H 0.15 4.18 7.59 -2.91 -0.02 4.16 16 34 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.11 4.68 4.73 -2.91 -0.01 4.67 16 36 H 0.30 14.24 8.30 -92.71 -0.77 13.47 16 37 H 0.11 5.05 7.60 -2.91 -0.02 5.03 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.77 6.97 -2.39 -0.02 1.75 16 40 H 0.05 1.36 5.45 -2.39 -0.01 1.35 16 41 H 0.07 0.88 6.46 -2.39 -0.02 0.86 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.39 3.81 9.05 -74.06 -0.67 3.14 16 Total: -1.00 -67.01 355.33 -1.60 -68.61 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -0.55 Total: 32.71 kcal Atomic # 6 Polarization: -75.92 SS G_CDS: 3.55 Total: -72.37 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -0.43 Total: -74.44 kcal Atomic # 8 Polarization: -83.27 SS G_CDS: -5.55 Total: -88.81 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.68 Total: 42.94 kcal Atomic # 16 Polarization: 91.67 SS G_CDS: -0.30 Total: 91.37 kcal Total: -67.01 -1.60 -68.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590169975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.474 kcal (2) G-P(sol) polarization free energy of solvation -67.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds