Wall clock time and date at job start Tue Mar 31 2020 15:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08704 * 180.02562 * 8 7 6 10 10 C 1.46496 * 119.99991 * 84.99806 * 9 8 7 11 11 S 1.65599 * 119.99915 * 264.99795 * 9 8 7 12 12 O 1.42095 * 104.27674 * 206.06986 * 11 9 8 13 13 O 1.42103 * 104.27912 * 333.93233 * 11 9 8 14 14 C 1.81409 * 104.44757 * 90.00027 * 11 9 8 15 15 C 1.53000 * 109.46604 * 180.02562 * 14 11 9 16 16 C 1.53001 * 109.47333 * 299.99710 * 15 14 11 17 17 C 1.52993 * 109.47458 * 60.00326 * 15 14 11 18 18 C 1.50705 * 109.46654 * 179.97438 * 15 14 11 19 19 H 1.08001 * 120.00275 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99819 * 179.97438 * 18 15 14 21 21 N 1.31509 * 119.99941 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99859 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.46848 * 90.00013 * 22 20 18 24 24 H 1.48490 * 109.47027 * 210.00418 * 22 20 18 25 25 H 1.48506 * 109.46964 * 330.00252 * 22 20 18 26 26 H 1.09001 * 109.46808 * 299.99239 * 1 2 3 27 27 H 1.08992 * 109.47286 * 59.99128 * 1 2 3 28 28 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.98749 * 0.24626 * 4 3 2 30 30 H 1.07997 * 119.90788 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 32 32 H 1.07999 * 120.00479 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47254 * 90.00075 * 10 9 8 34 34 H 1.09006 * 109.47147 * 209.99751 * 10 9 8 35 35 H 1.09000 * 109.47769 * 330.00154 * 10 9 8 36 36 H 1.09003 * 109.46928 * 299.99598 * 14 11 9 37 37 H 1.08997 * 109.46853 * 60.00293 * 14 11 9 38 38 H 1.09000 * 109.46999 * 60.00606 * 16 15 14 39 39 H 1.09000 * 109.47163 * 180.02562 * 16 15 14 40 40 H 1.08998 * 109.47037 * 300.00512 * 16 15 14 41 41 H 1.08998 * 109.47457 * 59.99853 * 17 15 14 42 42 H 1.09000 * 109.47252 * 179.97438 * 17 15 14 43 43 H 1.09000 * 109.47007 * 299.99476 * 17 15 14 44 44 H 0.97000 * 119.99965 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9229 3.6060 0.0011 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0000 8 6 3.4376 1.2868 0.0005 9 7 4.2034 0.1152 0.0005 10 6 4.6973 -0.4371 1.2643 11 16 4.5513 -0.6466 -1.4281 12 8 4.7517 -2.0047 -1.0613 13 8 3.4887 -0.2706 -2.2935 14 6 6.1111 0.1026 -1.9725 15 6 6.5425 -0.5251 -3.2994 16 6 6.7383 -2.0309 -3.1115 17 6 5.4628 -0.2789 -4.3550 18 6 7.8380 0.0978 -3.7520 19 1 8.3066 0.8649 -3.1533 20 6 8.4252 -0.3118 -4.9304 21 7 7.8544 -1.2455 -5.6596 22 14 10.0314 0.4598 -5.4911 23 1 11.1718 -0.3172 -4.9424 24 1 10.0939 0.4501 -6.9746 25 1 10.1053 1.8600 -5.0017 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 0.2152 2.3193 0.0050 30 1 1.3342 4.5114 0.0011 31 1 3.7903 4.6452 0.0005 32 1 5.1401 2.5874 0.0000 33 1 3.9629 -1.1342 1.6679 34 1 5.6373 -0.9606 1.0895 35 1 4.8591 0.3724 1.9761 36 1 5.9715 1.1753 -2.1068 37 1 6.8802 -0.0724 -1.2202 38 1 5.8010 -2.4811 -2.7844 39 1 7.0460 -2.4780 -4.0568 40 1 7.5075 -2.2062 -2.3595 41 1 5.3234 0.7938 -4.4889 42 1 5.7704 -0.7258 -5.3004 43 1 4.5256 -0.7291 -4.0279 44 1 8.2677 -1.5339 -6.4885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590744843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:39 Heat of formation + Delta-G solvation = -70.899605 kcal Electronic energy + Delta-G solvation = -27528.541495 eV Core-core repulsion = 23767.243532 eV Total energy + Delta-G solvation = -3761.297963 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.28752 -37.60321 -36.47966 -36.25050 -35.69009 -35.12575 -31.64033 -30.37898 -29.92339 -27.35518 -26.68919 -25.84464 -25.68496 -25.19935 -22.30817 -22.18258 -19.45325 -18.94870 -17.90666 -17.34119 -16.48892 -16.33819 -15.94387 -15.60038 -15.22114 -15.08161 -14.71913 -14.60114 -14.08866 -14.00925 -13.29572 -13.16092 -12.95887 -12.72691 -12.47344 -12.43621 -12.25340 -11.99409 -11.77822 -11.63763 -11.30940 -11.18680 -11.14710 -11.04088 -10.97653 -10.86690 -10.65458 -10.34421 -10.23652 -10.07288 -9.62330 -9.58817 -9.09631 -8.93706 -8.61327 -8.38160 -8.17082 -6.01238 -4.13213 0.77890 1.23849 1.39954 3.08072 3.27069 3.28523 3.34200 3.36300 3.63739 4.36425 4.49453 4.66312 4.75475 4.83472 5.00160 5.02325 5.09748 5.20658 5.23984 5.31408 5.41688 5.47589 5.58117 5.63611 5.68463 5.76003 5.87295 6.03468 6.16709 6.27324 6.39731 6.41478 6.59675 6.73208 6.82827 6.88728 6.94566 7.08184 7.34396 7.43708 7.53448 7.69792 8.00446 8.11943 8.35267 8.85101 9.51938 11.00138 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.004145 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.732186 B = 6753.479141 C = 7284.306672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.148 3.852 4 C -0.208 4.208 5 C -0.076 4.076 6 C -0.152 4.152 7 C -0.081 4.081 8 C 0.112 3.888 9 N -0.959 5.959 10 C 0.098 3.902 11 S 2.590 3.410 12 O -0.958 6.958 13 O -0.949 6.949 14 C -0.583 4.583 15 C 0.083 3.917 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.501 4.501 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.027 0.973 39 H 0.095 0.905 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 7.507 14.017 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.099 3.901 4 C -0.227 4.227 5 C -0.095 4.095 6 C -0.171 4.171 7 C -0.102 4.102 8 C 0.018 3.982 9 N -0.789 5.789 10 C -0.046 4.046 11 S 2.690 3.310 12 O -0.949 6.949 13 O -0.939 6.939 14 C -0.716 4.716 15 C 0.080 3.920 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.540 4.540 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.522 5.522 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.046 0.954 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.151 6.455 13.503 19.279 hybrid contribution 1.162 1.034 -0.178 1.565 sum -10.989 7.489 13.325 18.826 Atomic orbital electron populations 1.23089 0.78610 1.04090 1.01145 1.86181 1.21130 1.26374 1.87838 1.19363 0.91630 0.84754 0.94313 1.21156 1.00052 0.92020 1.09459 1.20982 0.94705 0.96869 0.96930 1.20946 0.93763 0.98109 1.04276 1.21348 1.00664 0.90789 0.97368 1.16585 0.86615 0.86381 1.08602 1.55457 1.64632 1.35943 1.22855 1.21489 0.99390 0.98619 0.85129 1.06040 0.77897 0.74818 0.72276 1.93529 1.87495 1.32059 1.81777 1.93537 1.52707 1.83706 1.63937 1.30593 1.18233 1.12173 1.10632 1.17929 0.96058 0.92489 0.85503 1.22276 0.98909 0.97319 1.03631 1.22263 0.95603 1.00281 1.03916 1.20941 1.05376 1.21338 1.06375 0.92306 1.24940 0.97488 0.94968 0.96337 1.69804 1.38847 1.29189 1.14346 0.86538 0.83648 0.79621 0.77849 1.20641 1.21127 1.19942 0.92827 0.92380 0.88224 0.85147 0.85575 0.85331 0.84606 0.92378 0.90635 0.91307 0.86440 0.86502 0.95427 0.88610 0.94477 0.94484 0.88667 0.95376 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.26 16 2 O -0.30 -4.69 10.24 -19.78 -0.20 -4.90 16 3 C 0.15 2.23 6.42 -39.08 -0.25 1.97 16 4 C -0.21 -2.46 9.04 -39.47 -0.36 -2.81 16 5 C -0.08 -0.79 10.04 -39.56 -0.40 -1.19 16 6 C -0.15 -1.66 10.04 -39.58 -0.40 -2.05 16 7 C -0.08 -1.05 9.97 -39.41 -0.39 -1.44 16 8 C 0.11 1.74 4.55 -83.56 -0.38 1.36 16 9 N -0.96 -15.75 2.88 -65.25 -0.19 -15.94 16 10 C 0.10 1.29 10.19 59.84 0.61 1.90 16 11 S 2.59 53.07 4.38 -107.50 -0.47 52.60 16 12 O -0.96 -21.53 14.71 -57.54 -0.85 -22.37 16 13 O -0.95 -21.69 14.62 -57.54 -0.84 -22.54 16 14 C -0.58 -12.01 5.12 37.16 0.19 -11.82 16 15 C 0.08 2.06 0.52 -155.66 -0.08 1.98 16 16 C -0.16 -4.15 7.78 37.16 0.29 -3.86 16 17 C -0.16 -4.15 7.77 37.15 0.29 -3.86 16 18 C -0.50 -13.35 8.01 -34.44 -0.28 -13.62 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -24.42 9.35 55.43 0.52 -23.90 16 22 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.06 0.55 7.67 -51.93 -0.40 0.15 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 35 H 0.07 0.71 8.05 -51.93 -0.42 0.29 16 36 H 0.12 2.22 8.14 -51.92 -0.42 1.80 16 37 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 38 H 0.03 0.67 5.47 -51.93 -0.28 0.39 16 39 H 0.10 2.59 6.07 -51.93 -0.32 2.28 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.09 2.59 6.07 -51.93 -0.32 2.27 16 43 H 0.03 0.69 5.46 -51.93 -0.28 0.40 16 44 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -33.84 361.05 -8.36 -42.20 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -6.49 Total: 4.22 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: -0.25 Total: -30.56 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.33 Total: -39.84 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -1.89 Total: -49.80 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 53.07 SS G_CDS: -0.47 Total: 52.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.84 -8.36 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590744843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.704 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds