Wall clock time and date at job start Tue Mar 31 2020 15:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36012 * 116.99936 * 2 1 4 4 C 1.38507 * 120.08094 * 0.02562 * 3 2 1 5 5 C 1.38285 * 120.01794 * 179.97438 * 4 3 2 6 6 C 1.38254 * 120.18247 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.15880 * 359.97438 * 6 5 4 8 8 C 1.38726 * 119.97943 * 359.97438 * 7 6 5 9 9 N 1.39969 * 120.08704 * 180.02562 * 8 7 6 10 10 C 1.46496 * 119.99991 * 84.99806 * 9 8 7 11 11 S 1.65599 * 119.99915 * 264.99795 * 9 8 7 12 12 O 1.42095 * 104.27674 * 206.06986 * 11 9 8 13 13 O 1.42103 * 104.27912 * 333.93233 * 11 9 8 14 14 C 1.81409 * 104.44757 * 90.00027 * 11 9 8 15 15 C 1.53000 * 109.46604 * 180.02562 * 14 11 9 16 16 C 1.53001 * 109.47333 * 299.99710 * 15 14 11 17 17 C 1.52993 * 109.47458 * 60.00326 * 15 14 11 18 18 C 1.50705 * 109.46654 * 179.97438 * 15 14 11 19 19 H 1.08001 * 120.00275 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99819 * 179.97438 * 18 15 14 21 21 N 1.31509 * 119.99941 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99859 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.46848 * 90.00013 * 22 20 18 24 24 H 1.48490 * 109.47027 * 210.00418 * 22 20 18 25 25 H 1.48506 * 109.46964 * 330.00252 * 22 20 18 26 26 H 1.09001 * 109.46808 * 299.99239 * 1 2 3 27 27 H 1.08992 * 109.47286 * 59.99128 * 1 2 3 28 28 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.07999 * 119.98749 * 0.24626 * 4 3 2 30 30 H 1.07997 * 119.90788 * 179.97438 * 5 4 3 31 31 H 1.07996 * 119.91798 * 179.97438 * 6 5 4 32 32 H 1.07999 * 120.00479 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47254 * 90.00075 * 10 9 8 34 34 H 1.09006 * 109.47147 * 209.99751 * 10 9 8 35 35 H 1.09000 * 109.47769 * 330.00154 * 10 9 8 36 36 H 1.09003 * 109.46928 * 299.99598 * 14 11 9 37 37 H 1.08997 * 109.46853 * 60.00293 * 14 11 9 38 38 H 1.09000 * 109.46999 * 60.00606 * 16 15 14 39 39 H 1.09000 * 109.47163 * 180.02562 * 16 15 14 40 40 H 1.08998 * 109.47037 * 300.00512 * 16 15 14 41 41 H 1.08998 * 109.47457 * 59.99853 * 17 15 14 42 42 H 1.09000 * 109.47252 * 179.97438 * 17 15 14 43 43 H 1.09000 * 109.47007 * 299.99476 * 17 15 14 44 44 H 0.97000 * 119.99965 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2937 2.3746 0.0005 5 6 1.9229 3.6060 0.0011 6 6 3.3034 3.6813 0.0005 7 6 4.0618 2.5257 0.0000 8 6 3.4376 1.2868 0.0005 9 7 4.2034 0.1152 0.0005 10 6 4.6973 -0.4371 1.2643 11 16 4.5513 -0.6466 -1.4281 12 8 4.7517 -2.0047 -1.0613 13 8 3.4887 -0.2706 -2.2935 14 6 6.1111 0.1026 -1.9725 15 6 6.5425 -0.5251 -3.2994 16 6 6.7383 -2.0309 -3.1115 17 6 5.4628 -0.2789 -4.3550 18 6 7.8380 0.0978 -3.7520 19 1 8.3066 0.8649 -3.1533 20 6 8.4252 -0.3118 -4.9304 21 7 7.8544 -1.2455 -5.6596 22 14 10.0314 0.4598 -5.4911 23 1 11.1718 -0.3172 -4.9424 24 1 10.0939 0.4501 -6.9746 25 1 10.1053 1.8600 -5.0017 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8898 28 1 -0.3633 -1.0277 0.0005 29 1 0.2152 2.3193 0.0050 30 1 1.3342 4.5114 0.0011 31 1 3.7903 4.6452 0.0005 32 1 5.1401 2.5874 0.0000 33 1 3.9629 -1.1342 1.6679 34 1 5.6373 -0.9606 1.0895 35 1 4.8591 0.3724 1.9761 36 1 5.9715 1.1753 -2.1068 37 1 6.8802 -0.0724 -1.2202 38 1 5.8010 -2.4811 -2.7844 39 1 7.0460 -2.4780 -4.0568 40 1 7.5075 -2.2062 -2.3595 41 1 5.3234 0.7938 -4.4889 42 1 5.7704 -0.7258 -5.3004 43 1 4.5256 -0.7291 -4.0279 44 1 8.2677 -1.5339 -6.4885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590744843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:38 Heat of formation + Delta-G solvation = -92.705901 kcal Electronic energy + Delta-G solvation = -27529.487087 eV Core-core repulsion = 23767.243532 eV Total energy + Delta-G solvation = -3762.243555 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22994 -38.57507 -38.16155 -38.14127 -36.96661 -36.61550 -33.64289 -31.28314 -30.84835 -28.45901 -28.15088 -27.72999 -27.26895 -26.92154 -23.34041 -23.08093 -21.30732 -20.25601 -19.11370 -18.70405 -17.92127 -17.65266 -17.41815 -16.75167 -16.67399 -16.54095 -16.32929 -15.57499 -15.15194 -15.05225 -14.90722 -14.71157 -14.45621 -14.18016 -14.04377 -13.84859 -13.40917 -13.21887 -13.03752 -12.99534 -12.87814 -12.79509 -12.69709 -12.56295 -12.52207 -12.19237 -12.14707 -12.00459 -11.99393 -11.90822 -11.60085 -11.42051 -10.68718 -10.42439 -10.21813 -9.83827 -9.12208 -8.03162 -6.22348 -0.73688 0.28582 0.48809 1.45101 1.46355 1.55548 1.72466 2.38935 2.44702 2.73561 2.90972 3.18370 3.24715 3.75769 3.93687 4.01125 4.09038 4.15109 4.28348 4.37533 4.39458 4.46950 4.54744 4.56273 4.65235 4.68958 4.76515 4.81007 4.82857 4.86578 4.94502 4.96693 5.05293 5.30961 5.34427 5.38539 5.47128 5.54285 5.63292 5.70175 5.91246 5.93049 6.08277 6.32036 6.50207 6.81988 7.45965 8.97145 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.004145 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.732186 B = 6753.479141 C = 7284.306672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.120 3.880 4 C -0.211 4.211 5 C -0.070 4.070 6 C -0.151 4.151 7 C -0.091 4.091 8 C 0.075 3.925 9 N -0.949 5.949 10 C 0.089 3.911 11 S 2.600 3.400 12 O -0.987 6.987 13 O -0.979 6.979 14 C -0.582 4.582 15 C 0.071 3.929 16 C -0.159 4.159 17 C -0.158 4.158 18 C -0.517 4.517 19 H 0.065 0.935 20 C 0.017 3.983 21 N -0.909 5.909 22 Si 0.957 3.043 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.154 0.846 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.028 0.972 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.793 10.197 15.493 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.072 3.928 4 C -0.230 4.230 5 C -0.088 4.088 6 C -0.169 4.169 7 C -0.111 4.111 8 C -0.019 4.019 9 N -0.782 5.782 10 C -0.055 4.055 11 S 2.701 3.299 12 O -0.978 6.978 13 O -0.969 6.969 14 C -0.715 4.715 15 C 0.068 3.932 16 C -0.217 4.217 17 C -0.216 4.216 18 C -0.556 4.556 19 H 0.083 0.917 20 C -0.182 4.182 21 N -0.548 5.548 22 Si 0.782 3.218 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.190 1.190 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.172 0.828 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.231 9.141 14.981 21.391 hybrid contribution 1.073 0.258 -0.572 1.243 sum -11.158 9.399 14.409 20.505 Atomic orbital electron populations 1.23364 0.76603 1.05284 1.02570 1.86116 1.23494 1.27403 1.88222 1.19722 0.91991 0.85581 0.95537 1.21517 1.01279 0.91599 1.08620 1.21475 0.94981 0.97627 0.94689 1.21374 0.94157 0.98659 1.02753 1.21609 1.01637 0.90579 0.97292 1.16991 0.87089 0.86500 1.11324 1.54945 1.64698 1.36504 1.22046 1.21755 0.99376 0.99841 0.84500 1.05406 0.77309 0.74326 0.72841 1.93478 1.87732 1.34132 1.82425 1.93481 1.53629 1.84032 1.65779 1.30495 1.19241 1.12847 1.08936 1.17926 0.95543 0.92227 0.87463 1.22206 0.98998 0.98033 1.02485 1.22186 0.95955 1.00135 1.03277 1.21272 1.06087 1.21542 1.06672 0.91670 1.25707 1.00521 0.95413 0.96557 1.69948 1.40099 1.30194 1.14557 0.85574 0.79883 0.79149 0.77147 1.20270 1.21243 1.18968 0.90254 0.91970 0.87343 0.82832 0.81941 0.82313 0.83393 0.92670 0.90207 0.88132 0.84766 0.84404 0.95383 0.90852 0.93919 0.94197 0.90897 0.95350 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.34 -10.48 10.24 -93.69 -0.96 -11.44 16 3 C 0.12 3.49 6.42 22.59 0.14 3.64 16 4 C -0.21 -4.49 9.04 22.35 0.20 -4.29 16 5 C -0.07 -1.19 10.04 22.28 0.22 -0.96 16 6 C -0.15 -2.76 10.04 22.27 0.22 -2.53 16 7 C -0.09 -2.14 9.97 22.38 0.22 -1.92 16 8 C 0.07 2.23 4.55 38.22 0.17 2.40 16 9 N -0.95 -30.64 2.88 -360.36 -1.04 -31.68 16 10 C 0.09 2.25 10.19 127.77 1.30 3.56 16 11 S 2.60 107.12 4.38 -56.49 -0.25 106.87 16 12 O -0.99 -45.17 14.71 -127.65 -1.88 -47.05 16 13 O -0.98 -45.61 14.62 -127.65 -1.87 -47.48 16 14 C -0.58 -23.59 5.12 71.98 0.37 -23.22 16 15 C 0.07 3.54 0.52 -52.93 -0.03 3.51 16 16 C -0.16 -8.24 7.78 71.98 0.56 -7.68 16 17 C -0.16 -8.20 7.77 71.98 0.56 -7.64 16 18 C -0.52 -27.30 8.01 25.60 0.21 -27.09 16 19 H 0.07 3.28 7.74 -2.91 -0.02 3.26 16 20 C 0.02 0.93 5.15 84.66 0.44 1.36 16 21 N -0.91 -51.07 9.35 21.45 0.20 -50.87 16 22 Si 0.96 42.26 29.54 68.60 2.03 44.28 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H 0.08 1.09 7.66 -2.39 -0.02 1.07 16 27 H 0.06 1.13 7.67 -2.39 -0.02 1.11 16 28 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.15 2.37 6.30 -2.91 -0.02 2.35 16 30 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 31 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.92 7.79 -2.38 -0.02 1.91 16 35 H 0.10 1.88 8.05 -2.39 -0.02 1.86 16 36 H 0.13 4.91 8.14 -2.39 -0.02 4.89 16 37 H 0.14 4.90 8.14 -2.39 -0.02 4.88 16 38 H 0.03 1.40 5.47 -2.39 -0.01 1.39 16 39 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 40 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 4.09 6.07 -2.39 -0.01 4.07 16 43 H 0.03 1.43 5.46 -2.39 -0.01 1.41 16 44 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -74.37 361.05 2.94 -71.43 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.99 Total: 25.37 kcal Atomic # 6 Polarization: -65.15 SS G_CDS: 5.71 Total: -59.44 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -0.84 Total: -82.55 kcal Atomic # 8 Polarization: -101.26 SS G_CDS: -4.70 Total: -105.96 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 16 Polarization: 107.12 SS G_CDS: -0.25 Total: 106.87 kcal Total: -74.37 2.94 -71.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590744843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.273 kcal (2) G-P(sol) polarization free energy of solvation -74.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds