Wall clock time and date at job start Tue Mar 31 2020 15:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46979 * 2 1 4 4 C 1.50693 * 109.47375 * 239.99947 * 2 1 3 5 5 H 1.08001 * 120.00089 * 240.00183 * 4 2 1 6 6 C 1.37874 * 120.00119 * 59.99700 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00338 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46723 * 59.99950 * 8 6 4 10 10 H 1.48501 * 109.47129 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46669 * 300.00427 * 8 6 4 12 12 C 1.53005 * 109.46941 * 119.99978 * 2 1 3 13 13 S 1.81401 * 109.47196 * 299.99975 * 12 2 1 14 14 O 1.42096 * 110.54005 * 68.37546 * 13 12 2 15 15 O 1.42104 * 110.54252 * 291.62711 * 13 12 2 16 16 N 1.65596 * 104.44942 * 180.02562 * 13 12 2 17 17 C 1.47015 * 125.65202 * 90.02756 * 16 13 12 18 18 C 1.54320 * 107.27462 * 178.89526 * 17 16 13 19 19 C 1.55156 * 102.93891 * 337.80237 * 18 17 16 20 20 H 1.09009 * 111.00182 * 153.61491 * 19 18 17 21 21 C 1.50696 * 111.00838 * 277.42751 * 19 18 17 22 22 C 1.34517 * 125.79044 * 238.55229 * 21 19 18 23 23 C 1.41388 * 106.83576 * 180.02562 * 22 21 19 24 24 C 1.34511 * 106.84442 * 359.97438 * 23 22 21 25 25 O 1.34295 * 108.42007 * 0.27361 * 24 23 22 26 26 C 1.47426 * 125.64529 * 269.97009 * 16 13 12 27 27 H 1.09001 * 109.47002 * 299.99775 * 1 2 3 28 28 H 1.08997 * 109.47245 * 60.00310 * 1 2 3 29 29 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47213 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46879 * 299.99914 * 3 2 1 32 32 H 1.09000 * 109.46842 * 59.99770 * 3 2 1 33 33 H 0.97006 * 119.99465 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46754 * 180.02562 * 12 2 1 35 35 H 1.08994 * 109.47324 * 60.00161 * 12 2 1 36 36 H 1.09001 * 109.88716 * 59.46943 * 17 16 13 37 37 H 1.09010 * 110.01025 * 298.38493 * 17 16 13 38 38 H 1.09004 * 110.71783 * 219.44359 * 18 17 16 39 39 H 1.09003 * 110.72339 * 96.17053 * 18 17 16 40 40 H 1.07992 * 126.58224 * 0.04881 * 22 21 19 41 41 H 1.08002 * 126.57184 * 179.97438 * 23 22 21 42 42 H 1.08002 * 125.78644 * 179.97438 * 24 23 22 43 43 H 1.09000 * 110.36451 * 85.34107 * 26 16 13 44 44 H 1.09001 * 110.37084 * 323.01444 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 6 2.0400 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0541 -0.7400 3.9936 17 6 3.3491 -0.5018 4.6474 18 6 3.4868 -1.5379 5.7827 19 6 2.0151 -1.9371 6.0691 20 1 1.9569 -2.9432 6.4846 21 6 1.3529 -0.9391 6.9837 22 6 0.8024 -1.2129 8.1801 23 6 0.3004 0.0070 8.6888 24 6 0.5746 0.9534 7.7731 25 8 1.2071 0.3736 6.7400 26 6 1.3968 -1.8850 4.6497 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7095 1.1617 -3.4844 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 3.3761 0.5066 5.0604 37 1 4.1588 -0.6295 3.9288 38 1 3.9423 -1.0861 6.6639 39 1 4.0627 -2.4012 5.4493 40 1 0.7536 -2.1791 8.6602 41 1 -0.2061 0.1513 9.6317 42 1 0.3240 2.0009 7.8529 43 1 1.6113 -2.8066 4.1085 44 1 0.3209 -1.7213 4.7104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590746768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:59 Heat of formation + Delta-G solvation = -52.161818 kcal Electronic energy + Delta-G solvation = -27194.232767 eV Core-core repulsion = 23433.747336 eV Total energy + Delta-G solvation = -3760.485431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.64019 -38.50752 -36.50540 -36.25311 -35.23809 -33.14304 -31.86931 -31.64974 -29.62549 -28.03325 -26.60681 -25.70763 -25.22266 -22.90590 -22.02494 -21.76606 -20.06892 -19.42769 -18.51009 -17.54907 -17.33842 -16.03581 -15.99234 -15.95515 -15.36589 -14.99169 -14.84262 -14.43621 -13.88044 -13.45762 -13.32874 -12.94612 -12.93752 -12.87135 -12.74871 -12.60676 -12.49264 -12.07152 -11.66085 -11.53188 -11.49136 -11.25836 -11.08995 -11.05221 -11.03166 -10.92091 -10.68040 -10.38659 -10.25808 -10.09161 -9.97599 -9.64360 -9.55798 -8.92131 -8.63997 -8.44288 -8.39608 -6.02895 -4.15140 0.84122 1.67561 2.52742 2.95837 3.17397 3.27005 3.32492 3.33991 4.25237 4.32978 4.34667 4.43246 4.51237 4.79267 4.90693 4.98404 5.03674 5.18583 5.22164 5.36127 5.50399 5.54722 5.59772 5.68585 5.71647 5.73805 5.80289 5.83544 5.94652 6.07191 6.21018 6.39203 6.41696 6.55134 6.71383 6.80569 6.91881 7.05453 7.12780 7.32168 7.51167 7.67938 7.98514 8.10046 8.33470 8.83087 9.50138 10.98388 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.003359 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.537224 B = 8334.399800 C = 8659.280824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.082 3.918 3 C -0.163 4.163 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.609 3.391 14 O -0.959 6.959 15 O -0.958 6.958 16 N -1.017 6.017 17 C 0.120 3.880 18 C -0.122 4.122 19 C -0.022 4.022 20 H 0.120 0.880 21 C 0.004 3.996 22 C -0.213 4.213 23 C -0.219 4.219 24 C -0.040 4.040 25 O -0.161 6.161 26 C 0.121 3.879 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.095 0.905 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.200 0.800 43 H 0.076 0.924 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.098 -5.699 19.947 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.716 4.716 13 S 2.709 3.291 14 O -0.950 6.950 15 O -0.949 6.949 16 N -0.854 5.854 17 C -0.005 4.005 18 C -0.160 4.160 19 C -0.042 4.042 20 H 0.138 0.862 21 C -0.047 4.047 22 C -0.232 4.232 23 C -0.238 4.238 24 C -0.108 4.108 25 O -0.056 6.056 26 C -0.005 4.005 27 H 0.046 0.954 28 H 0.114 0.886 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.217 0.783 43 H 0.094 0.906 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.535 -4.597 19.592 20.283 hybrid contribution 0.559 -1.025 -0.855 1.447 sum 3.095 -5.622 18.737 19.805 Atomic orbital electron populations 1.22271 0.96910 1.00604 1.02303 1.17931 0.92834 0.92218 0.89061 1.22271 0.99697 0.97823 1.02306 1.20908 1.31792 1.12111 0.89418 0.92365 1.24944 0.94883 0.94988 0.98919 1.69800 1.36257 1.22546 1.23582 0.86590 0.79143 0.79710 0.82134 1.20261 1.21162 1.20271 1.30589 1.11234 1.12829 1.16935 1.05302 0.74415 0.74649 0.74750 1.93526 1.29281 1.86529 1.85670 1.93529 1.78209 1.37502 1.85622 1.58888 1.29560 1.46988 1.49917 1.21639 0.84773 0.99581 0.94524 1.22746 0.94991 0.99590 0.98713 1.20951 0.94664 0.95437 0.93150 0.86241 1.22107 1.03400 0.82640 0.96568 1.21540 1.05521 0.99746 0.96439 1.21781 1.07105 0.92886 1.02044 1.24106 1.00300 0.99462 0.86976 1.84125 1.60122 1.20729 1.40601 1.22042 0.98400 0.89297 0.90759 0.95409 0.88642 0.94491 0.94492 0.88634 0.95410 0.92677 0.86498 0.86493 0.91024 0.91480 0.89922 0.89503 0.83606 0.83653 0.78307 0.90569 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 7.78 37.16 0.29 -3.81 16 2 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 3 C -0.16 -4.11 7.78 37.16 0.29 -3.82 16 4 C -0.50 -13.36 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C -0.58 -11.68 5.12 37.16 0.19 -11.49 16 13 S 2.61 51.08 4.68 -107.50 -0.50 50.58 16 14 O -0.96 -21.07 14.90 -57.54 -0.86 -21.92 16 15 O -0.96 -21.09 15.22 -57.54 -0.88 -21.97 16 16 N -1.02 -15.14 3.60 -111.42 -0.40 -15.54 16 17 C 0.12 1.49 6.44 -3.07 -0.02 1.47 16 18 C -0.12 -1.06 6.44 -24.90 -0.16 -1.22 16 19 C -0.02 -0.21 3.58 -89.63 -0.32 -0.53 16 20 H 0.12 0.74 8.13 -51.92 -0.42 0.32 16 21 C 0.00 0.04 5.80 -35.63 -0.21 -0.16 16 22 C -0.21 -2.23 10.80 -39.70 -0.43 -2.66 16 23 C -0.22 -2.27 10.91 -39.70 -0.43 -2.70 16 24 C -0.04 -0.46 12.09 29.41 0.36 -0.10 16 25 O -0.16 -2.26 10.30 5.71 0.06 -2.20 16 26 C 0.12 1.45 6.52 -2.53 -0.02 1.44 16 27 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 28 H 0.09 2.57 6.07 -51.93 -0.32 2.25 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 2.57 6.07 -51.93 -0.32 2.26 16 32 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 35 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 38 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.16 7.57 -51.93 -0.39 0.77 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -33.69 358.02 -9.22 -42.91 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.62 Total: 4.53 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: -0.91 Total: -33.65 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.12 Total: -39.38 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -1.67 Total: -46.09 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 51.08 SS G_CDS: -0.50 Total: 50.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.69 -9.22 -42.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.248 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds