Wall clock time and date at job start Tue Mar 31 2020 15:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46979 * 2 1 4 4 C 1.50693 * 109.47375 * 239.99947 * 2 1 3 5 5 H 1.08001 * 120.00089 * 240.00183 * 4 2 1 6 6 C 1.37874 * 120.00119 * 59.99700 * 4 2 1 7 7 N 1.31522 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 120.00338 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46723 * 59.99950 * 8 6 4 10 10 H 1.48501 * 109.47129 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46669 * 300.00427 * 8 6 4 12 12 C 1.53005 * 109.46941 * 119.99978 * 2 1 3 13 13 S 1.81401 * 109.47196 * 299.99975 * 12 2 1 14 14 O 1.42096 * 110.54005 * 68.37546 * 13 12 2 15 15 O 1.42104 * 110.54252 * 291.62711 * 13 12 2 16 16 N 1.65596 * 104.44942 * 180.02562 * 13 12 2 17 17 C 1.47015 * 125.65202 * 90.02756 * 16 13 12 18 18 C 1.54320 * 107.27462 * 178.89526 * 17 16 13 19 19 C 1.55156 * 102.93891 * 337.80237 * 18 17 16 20 20 H 1.09009 * 111.00182 * 153.61491 * 19 18 17 21 21 C 1.50696 * 111.00838 * 277.42751 * 19 18 17 22 22 C 1.34517 * 125.79044 * 238.55229 * 21 19 18 23 23 C 1.41388 * 106.83576 * 180.02562 * 22 21 19 24 24 C 1.34511 * 106.84442 * 359.97438 * 23 22 21 25 25 O 1.34295 * 108.42007 * 0.27361 * 24 23 22 26 26 C 1.47426 * 125.64529 * 269.97009 * 16 13 12 27 27 H 1.09001 * 109.47002 * 299.99775 * 1 2 3 28 28 H 1.08997 * 109.47245 * 60.00310 * 1 2 3 29 29 H 1.09002 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47213 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46879 * 299.99914 * 3 2 1 32 32 H 1.09000 * 109.46842 * 59.99770 * 3 2 1 33 33 H 0.97006 * 119.99465 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.46754 * 180.02562 * 12 2 1 35 35 H 1.08994 * 109.47324 * 60.00161 * 12 2 1 36 36 H 1.09001 * 109.88716 * 59.46943 * 17 16 13 37 37 H 1.09010 * 110.01025 * 298.38493 * 17 16 13 38 38 H 1.09004 * 110.71783 * 219.44359 * 18 17 16 39 39 H 1.09003 * 110.72339 * 96.17053 * 18 17 16 40 40 H 1.07992 * 126.58224 * 0.04881 * 22 21 19 41 41 H 1.08002 * 126.57184 * 179.97438 * 23 22 21 42 42 H 1.08002 * 125.78644 * 179.97438 * 24 23 22 43 43 H 1.09000 * 110.36451 * 85.34107 * 26 16 13 44 44 H 1.09001 * 110.37084 * 323.01444 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 6 2.0400 -0.7213 1.2493 13 16 1.4353 0.1339 2.7304 14 8 0.0280 -0.0183 2.8544 15 8 2.0479 1.4101 2.8544 16 7 2.0541 -0.7400 3.9936 17 6 3.3491 -0.5018 4.6474 18 6 3.4868 -1.5379 5.7827 19 6 2.0151 -1.9371 6.0691 20 1 1.9569 -2.9432 6.4846 21 6 1.3529 -0.9391 6.9837 22 6 0.8024 -1.2129 8.1801 23 6 0.3004 0.0070 8.6888 24 6 0.5746 0.9534 7.7731 25 8 1.2071 0.3736 6.7400 26 6 1.3968 -1.8850 4.6497 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7095 1.1617 -3.4844 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 3.3761 0.5066 5.0604 37 1 4.1588 -0.6295 3.9288 38 1 3.9423 -1.0861 6.6639 39 1 4.0627 -2.4012 5.4493 40 1 0.7536 -2.1791 8.6602 41 1 -0.2061 0.1513 9.6317 42 1 0.3240 2.0009 7.8529 43 1 1.6113 -2.8066 4.1085 44 1 0.3209 -1.7213 4.7104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590746768.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:58 Heat of formation + Delta-G solvation = -73.973597 kcal Electronic energy + Delta-G solvation = -27195.178597 eV Core-core repulsion = 23433.747336 eV Total energy + Delta-G solvation = -3761.431261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.46674 -39.41374 -38.15167 -38.14667 -36.90243 -33.98304 -33.64805 -32.78293 -30.47507 -28.91183 -28.31646 -27.73375 -27.26736 -23.85955 -22.87212 -22.57790 -21.31060 -20.86890 -19.86228 -18.87568 -18.34680 -17.89797 -17.16089 -16.91556 -16.84606 -16.70053 -16.28220 -15.47569 -15.20352 -14.79763 -14.57477 -14.45654 -14.24085 -14.15374 -13.85061 -13.63866 -13.60668 -13.45844 -13.19948 -13.09035 -12.87434 -12.82119 -12.61287 -12.55475 -12.37942 -12.22899 -12.15676 -12.06764 -11.97836 -11.81516 -11.59862 -11.39323 -10.78426 -10.67148 -10.42803 -9.91284 -9.29131 -8.04120 -6.23602 -0.68345 0.85004 1.45386 1.45733 1.53307 1.75313 1.82114 2.23317 2.43747 2.91610 3.12095 3.18798 3.49768 3.70442 3.75357 3.99477 4.12347 4.20179 4.24728 4.29626 4.38800 4.55850 4.60298 4.65968 4.80662 4.81853 4.82707 4.86242 4.94808 4.97394 5.00614 5.04877 5.08540 5.11484 5.19941 5.34000 5.35401 5.44838 5.54169 5.62329 5.69892 5.92923 6.08152 6.31400 6.32196 6.80996 7.44898 8.95796 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.003359 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.537224 B = 8334.399800 C = 8659.280824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.159 4.159 4 C -0.519 4.519 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.957 3.043 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.582 4.582 13 S 2.624 3.376 14 O -0.991 6.991 15 O -0.991 6.991 16 N -1.014 6.014 17 C 0.107 3.893 18 C -0.108 4.108 19 C -0.016 4.016 20 H 0.162 0.838 21 C -0.020 4.020 22 C -0.214 4.214 23 C -0.221 4.221 24 C -0.067 4.067 25 O -0.196 6.196 26 C 0.108 3.892 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.120 0.880 40 H 0.174 0.826 41 H 0.168 0.832 42 H 0.216 0.784 43 H 0.109 0.891 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -8.492 21.408 23.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.067 3.933 3 C -0.217 4.217 4 C -0.558 4.558 5 H 0.083 0.917 6 C -0.183 4.183 7 N -0.548 5.548 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.196 1.196 12 C -0.715 4.715 13 S 2.724 3.276 14 O -0.981 6.981 15 O -0.981 6.981 16 N -0.854 5.854 17 C -0.018 4.018 18 C -0.147 4.147 19 C -0.036 4.036 20 H 0.180 0.820 21 C -0.070 4.070 22 C -0.232 4.232 23 C -0.240 4.240 24 C -0.135 4.135 25 O -0.093 6.093 26 C -0.017 4.017 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.139 0.861 40 H 0.191 0.809 41 H 0.186 0.814 42 H 0.233 0.767 43 H 0.127 0.873 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.919 -7.392 21.056 22.658 hybrid contribution 0.104 -0.135 -1.208 1.220 sum 4.023 -7.527 19.848 21.605 Atomic orbital electron populations 1.22197 0.97803 1.00485 1.01156 1.17932 0.92313 0.92101 0.90983 1.22200 0.99808 0.98501 1.01167 1.21268 1.31851 1.12428 0.90299 0.91656 1.25722 0.95108 0.95648 1.01799 1.69951 1.37150 1.23719 1.23975 0.85626 0.78770 0.78740 0.78574 1.19521 1.21342 1.19591 1.30493 1.12440 1.13366 1.15166 1.04440 0.73591 0.74320 0.75270 1.93477 1.31379 1.86972 1.86284 1.93477 1.78559 1.39852 1.86252 1.58445 1.30854 1.47575 1.48501 1.21944 0.83754 0.99985 0.96113 1.22771 0.94995 0.99519 0.97412 1.21179 0.94355 0.96860 0.91160 0.82010 1.22740 1.04237 0.82284 0.97753 1.21942 1.04437 1.00806 0.96050 1.22167 1.06508 0.92742 1.02557 1.24661 1.00896 1.00814 0.87090 1.84102 1.61076 1.22194 1.41921 1.22408 0.97281 0.89186 0.92807 0.95311 0.90991 0.94005 0.94090 0.90960 0.95317 0.92880 0.84586 0.84422 0.93301 0.90027 0.89082 0.86132 0.80900 0.81437 0.76708 0.87279 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.12 7.78 71.98 0.56 -7.56 16 2 C 0.07 3.41 0.52 -52.93 -0.03 3.38 16 3 C -0.16 -8.16 7.78 71.98 0.56 -7.60 16 4 C -0.52 -27.31 8.01 25.60 0.21 -27.10 16 5 H 0.07 3.26 7.74 -2.91 -0.02 3.24 16 6 C 0.02 0.89 5.15 84.65 0.44 1.32 16 7 N -0.91 -51.02 9.35 21.45 0.20 -50.82 16 8 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 12 C -0.58 -22.70 5.12 71.98 0.37 -22.33 16 13 S 2.62 102.88 4.68 -56.49 -0.26 102.61 16 14 O -0.99 -44.27 14.90 -127.65 -1.90 -46.17 16 15 O -0.99 -44.60 15.22 -127.65 -1.94 -46.54 16 16 N -1.01 -28.95 3.60 -506.43 -1.82 -30.77 16 17 C 0.11 2.46 6.44 86.73 0.56 3.02 16 18 C -0.11 -1.50 6.44 31.78 0.20 -1.30 16 19 C -0.02 -0.25 3.58 -10.15 -0.04 -0.29 16 20 H 0.16 1.15 8.13 -2.38 -0.02 1.13 16 21 C -0.02 -0.44 5.80 24.83 0.14 -0.30 16 22 C -0.21 -3.96 10.80 22.19 0.24 -3.72 16 23 C -0.22 -4.25 10.91 22.19 0.24 -4.01 16 24 C -0.07 -1.53 12.09 66.97 0.81 -0.72 16 25 O -0.20 -5.54 10.30 -2.47 -0.03 -5.57 16 26 C 0.11 2.34 6.52 86.85 0.57 2.91 16 27 H 0.03 1.42 5.46 -2.39 -0.01 1.41 16 28 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 4.02 6.07 -2.39 -0.01 4.01 16 32 H 0.03 1.42 5.46 -2.39 -0.01 1.41 16 33 H 0.26 14.08 8.31 -92.70 -0.77 13.30 16 34 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 35 H 0.14 4.73 8.14 -2.39 -0.02 4.71 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.09 1.16 8.04 -2.39 -0.02 1.14 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.22 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.68 7.57 -2.39 -0.02 1.67 16 Total: -1.00 -75.03 358.02 2.09 -72.94 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.99 Total: 24.44 kcal Atomic # 6 Polarization: -69.13 SS G_CDS: 4.83 Total: -64.30 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.62 Total: -81.60 kcal Atomic # 8 Polarization: -94.41 SS G_CDS: -3.87 Total: -98.28 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 102.88 SS G_CDS: -0.26 Total: 102.61 kcal Total: -75.03 2.09 -72.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590746768.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.031 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds