Wall clock time and date at job start Tue Mar 31 2020 15:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46976 * 2 1 4 4 C 1.53000 * 109.47226 * 184.35011 * 3 2 1 5 5 H 1.08999 * 109.46630 * 304.54665 * 4 3 2 6 6 C 1.52996 * 109.46910 * 184.55057 * 4 3 2 7 7 N 1.46503 * 109.46933 * 174.30857 * 6 4 3 8 8 S 1.65601 * 120.00103 * 162.70452 * 7 6 4 9 9 O 1.42095 * 106.40159 * 178.54451 * 8 7 6 10 10 O 1.42104 * 106.40119 * 311.45939 * 8 7 6 11 11 C 1.76198 * 107.21936 * 65.00028 * 8 7 6 12 12 C 1.38657 * 119.87378 * 269.73187 * 11 8 7 13 13 C 1.38616 * 120.49774 * 179.72137 * 12 11 8 14 14 C 1.37633 * 120.24995 * 0.55024 * 13 12 11 15 15 C 1.40703 * 119.74294 * 359.72624 * 14 13 12 16 16 C 1.41394 * 120.24240 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99970 * 206.86453 * 16 15 14 18 18 C 1.39947 * 120.00364 * 26.86061 * 16 15 14 19 19 N 1.30822 * 120.00013 * 12.24385 * 18 16 15 20 20 Si 1.86798 * 120.00050 * 192.24476 * 18 16 15 21 21 H 1.48500 * 109.47102 * 89.99823 * 20 18 16 22 22 H 1.48500 * 109.47189 * 209.99773 * 20 18 16 23 23 H 1.48506 * 109.47162 * 330.00094 * 20 18 16 24 24 C 1.37598 * 119.87599 * 90.00027 * 11 8 7 25 25 O 1.42891 * 109.47278 * 64.54593 * 4 3 2 26 26 C 1.42900 * 114.00253 * 221.41700 * 25 4 3 27 27 H 1.09000 * 109.46978 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47144 * 300.00146 * 1 2 3 29 29 H 1.09000 * 109.47274 * 60.00458 * 1 2 3 30 30 H 1.08998 * 109.47144 * 239.99854 * 2 1 3 31 31 H 1.09000 * 109.47274 * 119.99542 * 2 1 3 32 32 H 1.08997 * 109.47194 * 64.34434 * 3 2 1 33 33 H 1.09003 * 109.47065 * 304.34911 * 3 2 1 34 34 H 1.08994 * 109.47185 * 294.30777 * 6 4 3 35 35 H 1.09007 * 109.47692 * 54.31217 * 6 4 3 36 36 H 0.96997 * 120.00295 * 342.70418 * 7 6 4 37 37 H 1.08002 * 119.75017 * 359.97438 * 12 11 8 38 38 H 1.07998 * 119.87622 * 180.25371 * 13 12 11 39 39 H 1.07999 * 120.13411 * 179.70138 * 14 13 12 40 40 H 0.96997 * 120.00105 * 180.02562 * 19 18 16 41 41 H 1.07998 * 120.12561 * 359.97438 * 24 11 8 42 42 H 1.08998 * 109.47516 * 182.44352 * 26 25 4 43 43 H 1.09003 * 109.47295 * 302.45073 * 26 25 4 44 44 H 1.09003 * 109.46569 * 62.45127 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5661 1.4440 -0.1094 5 1 3.9884 0.8404 0.6939 6 6 4.0841 2.8791 0.0046 7 7 5.5488 2.8684 0.0364 8 16 6.3939 4.2585 -0.2731 9 8 7.7696 3.9313 -0.1332 10 8 5.8425 4.8069 -1.4625 11 6 6.0188 5.3957 1.0195 12 6 4.9482 6.2664 0.8843 13 6 4.6381 7.1623 1.8955 14 6 5.3986 7.2044 3.0419 15 6 6.4908 6.3294 3.1876 16 6 7.2788 6.3632 4.3611 17 1 8.3121 6.0509 4.3269 18 6 6.7199 6.8015 5.5669 19 7 5.4244 6.9508 5.6714 20 14 7.8236 7.1733 7.0274 21 1 8.2346 8.5997 6.9867 22 1 7.0840 6.9070 8.2873 23 1 9.0297 6.3088 6.9691 24 6 6.7928 5.4201 2.1569 25 8 3.9537 0.8964 -1.3710 26 6 5.0791 0.0184 -1.3025 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.7416 1.9334 0.9263 33 1 1.6144 1.9784 -0.8485 34 1 3.7436 3.4576 -0.8541 35 1 3.7042 3.3309 0.9209 36 1 6.0236 2.0471 0.2387 37 1 4.3490 6.2435 -0.0139 38 1 3.7995 7.8332 1.7814 39 1 5.1582 7.9065 3.8266 40 1 5.0370 7.2548 6.5070 41 1 7.6286 4.7437 2.2584 42 1 5.3370 -0.3207 -2.3058 43 1 5.9273 0.5480 -0.8686 44 1 4.8312 -0.8420 -0.6808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590758652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:30 Heat of formation + Delta-G solvation = -142.258276 kcal Electronic energy + Delta-G solvation = -26006.420696 eV Core-core repulsion = 22242.028389 eV Total energy + Delta-G solvation = -3764.392307 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.78459 -39.45494 -38.27464 -36.92825 -35.88033 -35.64453 -35.42668 -31.90624 -31.58757 -31.07028 -27.35274 -27.25282 -26.61300 -23.68311 -22.95539 -22.71886 -21.98686 -20.57825 -19.64105 -18.55899 -17.87434 -17.73049 -17.45722 -16.82351 -16.58174 -16.25258 -16.14187 -15.53846 -15.33425 -15.09742 -15.01989 -14.55450 -14.30088 -14.11954 -13.92875 -13.71485 -13.32858 -13.26400 -13.18556 -13.10366 -13.02671 -13.01405 -12.78535 -12.62496 -12.53361 -12.23629 -12.19889 -11.78505 -11.76634 -11.54578 -11.41401 -11.37378 -11.18090 -10.74773 -10.24528 -9.84301 -9.53826 -8.68880 -6.47117 -0.51398 0.39535 0.83445 1.37919 1.46037 1.50553 2.11151 2.18172 2.56995 2.75307 2.87390 3.41526 3.51746 3.73816 3.90850 4.09333 4.28798 4.30273 4.32120 4.43540 4.48504 4.55854 4.60222 4.65010 4.72375 4.83571 4.84654 4.88981 4.90869 4.97460 5.03834 5.07310 5.12093 5.21185 5.32384 5.40022 5.40837 5.52565 5.55372 5.88459 5.95062 6.01973 6.10460 6.29268 6.52982 6.80666 6.84452 8.27688 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013116 B = 0.003401 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.215546 B = 8231.481720 C = 9121.369304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.121 4.121 4 C 0.087 3.913 5 H 0.084 0.916 6 C 0.092 3.908 7 N -1.105 6.105 8 S 2.719 3.281 9 O -0.996 6.996 10 O -0.986 6.986 11 C -0.640 4.640 12 C -0.143 4.143 13 C -0.124 4.124 14 C -0.135 4.135 15 C 0.061 3.939 16 C -0.498 4.498 17 H 0.077 0.923 18 C 0.036 3.964 19 N -0.826 5.826 20 Si 0.985 3.015 21 H -0.263 1.263 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.141 4.141 25 O -0.393 6.393 26 C 0.019 3.981 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.421 0.579 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.117 0.883 40 H 0.291 0.709 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 -12.301 -5.943 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.160 4.160 4 C 0.027 3.973 5 H 0.102 0.898 6 C -0.034 4.034 7 N -0.867 5.867 8 S 2.811 3.189 9 O -0.986 6.986 10 O -0.976 6.976 11 C -0.729 4.729 12 C -0.164 4.164 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.058 3.942 16 C -0.527 4.527 17 H 0.095 0.905 18 C -0.179 4.179 19 N -0.453 5.453 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.185 1.185 24 C -0.162 4.162 25 O -0.312 6.312 26 C -0.078 4.078 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.258 0.742 37 H 0.150 0.850 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.113 0.887 43 H 0.058 0.942 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.425 -11.900 -6.713 15.550 hybrid contribution 0.604 0.263 1.695 1.819 sum -6.820 -11.637 -5.017 14.391 Atomic orbital electron populations 1.21763 0.95213 1.01976 1.01949 1.21440 0.96343 0.95690 1.02161 1.21793 0.91867 0.98753 1.03556 1.22420 0.96297 0.91765 0.86798 0.89842 1.22060 0.77915 1.00212 1.03201 1.55235 1.16180 1.25990 1.89343 1.00794 0.71909 0.72833 0.73323 1.93496 1.33467 1.84146 1.87529 1.93496 1.79880 1.79121 1.45101 1.30204 1.07819 1.18536 1.16322 1.20497 0.97650 0.98719 0.99515 1.21166 0.99800 0.99419 0.93879 1.21733 0.97592 0.99021 0.97127 1.18053 0.93079 0.90307 0.92780 1.19855 0.98742 1.40609 0.93537 0.90519 1.26703 0.96564 0.91794 1.02800 1.69778 1.12628 1.34020 1.28842 0.85155 0.78655 0.79597 0.76059 1.18738 1.18976 1.18456 1.20881 1.00340 1.00340 0.94673 1.87917 1.49145 1.63862 1.30253 1.23073 0.87951 0.92918 1.03840 0.92210 0.92518 0.92786 0.91936 0.91746 0.89416 0.90946 0.89873 0.89914 0.74188 0.85006 0.85411 0.86559 0.89845 0.87219 0.88705 0.94197 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.78 5.88 30.60 0.18 -1.60 16 3 C -0.12 -2.08 4.92 30.60 0.15 -1.93 16 4 C 0.09 1.72 2.29 30.59 0.07 1.79 16 5 H 0.08 1.42 7.69 -2.39 -0.02 1.40 16 6 C 0.09 2.28 5.90 86.38 0.51 2.79 16 7 N -1.10 -30.79 5.72 -187.49 -1.07 -31.86 16 8 S 2.72 100.09 5.73 -56.49 -0.32 99.77 16 9 O -1.00 -41.46 17.27 -128.00 -2.21 -43.67 16 10 O -0.99 -39.41 16.70 -128.00 -2.14 -41.55 16 11 C -0.64 -27.48 5.94 22.22 0.13 -27.35 16 12 C -0.14 -5.96 9.53 22.46 0.21 -5.74 16 13 C -0.12 -5.38 10.02 22.22 0.22 -5.16 16 14 C -0.13 -6.77 8.68 22.73 0.20 -6.57 16 15 C 0.06 3.21 5.57 -21.29 -0.12 3.09 16 16 C -0.50 -26.19 9.07 23.46 0.21 -25.98 16 17 H 0.08 3.94 7.88 -2.91 -0.02 3.91 16 18 C 0.04 1.75 5.24 85.26 0.45 2.19 16 19 N -0.83 -40.91 10.79 21.83 0.24 -40.68 16 20 Si 0.98 36.96 29.58 68.60 2.03 38.99 16 21 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 24 C -0.14 -6.87 9.26 22.73 0.21 -6.66 16 25 O -0.39 -8.59 9.75 -148.98 -1.45 -10.05 16 26 C 0.02 0.31 10.66 113.37 1.21 1.52 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.01 7.70 -2.39 -0.02 1.00 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 2.17 7.71 -2.39 -0.02 2.15 16 35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.42 9.78 6.77 -96.75 -0.66 9.12 16 37 H 0.13 4.78 7.59 -2.91 -0.02 4.76 16 38 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.12 6.01 6.13 -2.91 -0.02 5.99 16 40 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16 41 H 0.11 5.20 7.60 -2.91 -0.02 5.18 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.04 0.68 6.08 -2.39 -0.01 0.67 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -65.48 374.50 -0.24 -65.72 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.34 Total: 34.24 kcal Atomic # 6 Polarization: -75.28 SS G_CDS: 4.35 Total: -70.93 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -0.84 Total: -72.53 kcal Atomic # 8 Polarization: -89.47 SS G_CDS: -5.80 Total: -95.27 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: 100.09 SS G_CDS: -0.32 Total: 99.77 kcal Total: -65.48 -0.24 -65.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590758652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.537 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds