Wall clock time and date at job start Tue Mar 31 2020 14:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46847 * 2 1 4 4 C 1.52994 * 109.47054 * 240.00205 * 2 1 3 5 5 O 1.42901 * 109.47484 * 59.99655 * 4 2 1 6 6 C 1.52992 * 109.47279 * 119.99897 * 2 1 3 7 7 C 1.53008 * 109.47385 * 300.00239 * 6 2 1 8 8 N 1.46500 * 109.47488 * 179.97438 * 7 6 2 9 9 S 1.65599 * 120.00214 * 164.99885 * 8 7 6 10 10 O 1.42099 * 106.39938 * 311.46446 * 9 8 7 11 11 O 1.42092 * 106.40136 * 178.53974 * 9 8 7 12 12 C 1.76199 * 107.21588 * 64.99779 * 9 8 7 13 13 C 1.38649 * 119.87924 * 270.25539 * 12 9 8 14 14 C 1.38617 * 120.50384 * 180.30415 * 13 12 9 15 15 C 1.37641 * 120.24556 * 359.44340 * 14 13 12 16 16 C 1.40700 * 119.74456 * 0.27362 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46564 * 60.00381 * 21 19 17 23 23 H 1.48498 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46916 * 300.00498 * 21 19 17 25 25 C 1.37604 * 119.87027 * 90.00133 * 12 9 8 26 26 H 1.09002 * 109.46846 * 299.99847 * 1 2 3 27 27 H 1.08999 * 109.46989 * 60.00216 * 1 2 3 28 28 H 1.08996 * 109.46410 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47209 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47758 * 300.00056 * 3 2 1 31 31 H 1.09003 * 109.47578 * 59.99966 * 3 2 1 32 32 H 1.09003 * 109.46998 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.47552 * 299.99385 * 4 2 1 34 34 H 0.96698 * 114.00141 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.47652 * 180.02562 * 6 2 1 36 36 H 1.09001 * 109.47451 * 60.00092 * 6 2 1 37 37 H 1.08994 * 109.46890 * 59.99842 * 7 6 2 38 38 H 1.09001 * 109.46706 * 300.00309 * 7 6 2 39 39 H 0.96998 * 119.99788 * 345.00004 * 8 7 6 40 40 H 1.08005 * 119.75337 * 0.03997 * 13 12 9 41 41 H 1.07992 * 119.88323 * 179.71839 * 14 13 12 42 42 H 1.07998 * 120.13267 * 180.25377 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.13007 * 0.02562 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 6 2.0401 -0.7212 1.2492 7 6 1.5301 0.0000 2.4985 8 7 2.0179 -0.6909 3.6947 9 16 1.9439 0.0564 5.1706 10 8 2.4861 1.3573 4.9893 11 8 2.4535 -0.8731 6.1169 12 6 0.2394 0.2774 5.5584 13 6 -0.4144 1.4346 5.1634 14 6 -1.7535 1.6247 5.4670 15 6 -2.4521 0.6591 6.1555 16 6 -1.8005 -0.5217 6.5563 17 6 -2.5078 -1.5204 7.2645 18 1 -1.9748 -2.2110 7.9011 19 6 -3.8986 -1.6137 7.1407 20 7 -4.5060 -1.0369 6.1357 21 14 -4.8879 -2.5620 8.4102 22 1 -4.6871 -1.9532 9.7497 23 1 -6.3286 -2.5113 8.0538 24 1 -4.4342 -3.9758 8.4360 25 6 -0.4392 -0.7014 6.2476 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2493 34 1 1.8493 -0.4509 -3.2472 35 1 3.1301 -0.7208 1.2495 36 1 1.6768 -1.7489 1.2492 37 1 0.4401 0.0000 2.4985 38 1 1.8933 1.0277 2.4984 39 1 2.3843 -1.5861 3.6222 40 1 0.1248 2.1955 4.6187 41 1 -2.2516 2.5318 5.1584 42 1 -3.4964 0.8073 6.3875 43 1 -5.4701 -1.1020 6.0497 44 1 0.0710 -1.6035 6.5511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590759190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:44 Heat of formation + Delta-G solvation = -129.131733 kcal Electronic energy + Delta-G solvation = -26065.083529 eV Core-core repulsion = 22301.260432 eV Total energy + Delta-G solvation = -3763.823097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -38.87540 -37.63833 -36.68403 -36.16604 -35.29165 -34.01844 -33.84380 -30.07933 -29.78855 -28.27632 -27.30540 -26.69076 -25.49228 -22.93795 -21.88472 -20.98187 -19.32984 -18.69006 -17.98058 -17.56101 -16.79518 -16.21947 -15.93801 -15.42029 -15.18804 -14.96649 -14.66353 -14.58325 -14.11106 -13.71926 -13.47335 -13.31692 -12.93796 -12.84066 -12.57830 -12.16403 -11.93306 -11.84293 -11.60839 -11.58400 -11.54723 -11.41873 -11.39057 -11.35595 -11.01336 -10.91044 -10.86811 -10.73917 -10.62801 -10.47375 -10.17463 -9.78884 -9.64041 -9.34975 -9.09588 -8.04040 -7.70948 -6.93366 -4.54132 1.04675 2.19720 2.63828 2.98995 3.01169 3.08203 3.55595 3.82204 3.99661 4.25130 4.42985 4.61920 4.64010 4.86909 4.99242 5.10359 5.19484 5.23918 5.38884 5.40349 5.49104 5.57036 5.68311 5.78184 5.91573 5.94617 5.98774 6.04695 6.10578 6.17130 6.21403 6.33130 6.39066 6.65411 6.76030 6.84719 7.02643 7.20009 7.25184 7.38387 7.39553 7.72614 7.80444 7.94072 8.39709 8.66412 8.71392 10.01982 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003442 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.828927 B = 8132.807914 C = 9234.793085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.144 4.144 4 C 0.087 3.913 5 O -0.569 6.569 6 C -0.116 4.116 7 C 0.116 3.884 8 N -1.122 6.122 9 S 2.690 3.310 10 O -0.976 6.976 11 O -0.974 6.974 12 C -0.631 4.631 13 C -0.149 4.149 14 C -0.120 4.120 15 C -0.119 4.119 16 C 0.092 3.908 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.124 4.124 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.376 0.624 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.284 0.716 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.822 -0.494 -13.074 15.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.062 4.062 3 C -0.201 4.201 4 C 0.009 3.991 5 O -0.373 6.373 6 C -0.155 4.155 7 C -0.010 4.010 8 N -0.880 5.880 9 S 2.786 3.214 10 O -0.966 6.966 11 O -0.964 6.964 12 C -0.723 4.723 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.490 4.490 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.145 4.145 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.222 0.778 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.246 0.754 40 H 0.124 0.876 41 H 0.116 0.884 42 H 0.142 0.858 43 H 0.095 0.905 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.986 0.355 -12.219 14.602 hybrid contribution -0.974 -1.335 -0.082 1.655 sum 7.012 -0.980 -12.301 14.193 Atomic orbital electron populations 1.21904 0.93503 1.02136 1.02638 1.20522 0.96964 0.96243 0.92499 1.21901 1.00650 0.95000 1.02576 1.22206 0.96925 0.94611 0.85349 1.86485 1.77537 1.57380 1.15945 1.21767 1.01211 0.99742 0.92778 1.21395 0.99621 0.96408 0.83580 1.55556 1.79086 1.29813 1.23529 1.01607 0.75061 0.72970 0.71803 1.93507 1.77865 1.39633 1.85568 1.93533 1.79618 1.63911 1.59387 1.29736 1.22817 1.04131 1.15642 1.20081 0.95151 0.96309 1.05502 1.20809 0.94101 0.98522 1.00549 1.21638 1.00283 0.92465 0.99444 1.17678 0.90811 0.92234 0.90453 1.19592 0.91625 1.13687 1.24135 0.89952 1.25930 0.98430 0.94908 0.94992 1.69776 1.11574 1.35573 1.24977 0.86299 0.78136 0.80529 0.81449 1.18676 1.20239 1.18833 1.20780 0.95908 0.96911 1.00939 0.91768 0.91843 0.92727 0.92857 0.91801 0.91904 0.93779 0.93678 0.77795 0.91031 0.90917 0.90857 0.90102 0.75434 0.87628 0.88389 0.85752 0.90531 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.98 37.16 0.30 -1.30 16 2 C -0.06 -0.61 0.63 -154.51 -0.10 -0.71 16 3 C -0.14 -1.48 7.97 37.16 0.30 -1.19 16 4 C 0.09 0.73 5.91 37.15 0.22 0.95 16 5 O -0.57 -4.93 12.31 -35.23 -0.43 -5.36 16 6 C -0.12 -1.16 4.41 -26.73 -0.12 -1.28 16 7 C 0.12 1.50 5.52 -4.04 -0.02 1.48 16 8 N -1.12 -16.01 6.00 -10.61 -0.06 -16.08 16 9 S 2.69 50.26 5.73 -107.50 -0.62 49.65 16 10 O -0.98 -19.80 16.74 -57.17 -0.96 -20.76 16 11 O -0.97 -20.42 17.26 -57.17 -0.99 -21.41 16 12 C -0.63 -13.71 5.94 -39.66 -0.24 -13.95 16 13 C -0.15 -3.21 9.53 -39.29 -0.37 -3.58 16 14 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 15 C -0.12 -2.94 8.70 -38.87 -0.34 -3.27 16 16 C 0.09 2.36 5.58 -106.82 -0.60 1.77 16 17 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 18 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 19 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 20 N -0.79 -19.48 10.95 55.55 0.61 -18.87 16 21 Si 0.91 17.99 29.60 -169.99 -5.03 12.96 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 25 C -0.12 -2.97 9.26 -38.87 -0.36 -3.33 16 26 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 27 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.68 7.68 -51.93 -0.40 0.28 16 31 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.38 1.59 9.12 45.56 0.42 2.01 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.01 6.43 -51.93 -0.33 0.67 16 38 H 0.08 1.06 6.04 -51.93 -0.31 0.75 16 39 H 0.41 4.86 8.65 -34.47 -0.30 4.56 16 40 H 0.11 2.04 7.61 -52.48 -0.40 1.64 16 41 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 42 H 0.12 3.13 6.15 -52.49 -0.32 2.81 16 43 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 44 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -31.37 368.50 -9.71 -41.08 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.63 Total: 11.16 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: -2.16 Total: -37.93 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.54 Total: -34.95 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -2.38 Total: -47.53 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 50.26 SS G_CDS: -0.62 Total: 49.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.37 -9.71 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590759190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.048 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds