Wall clock time and date at job start Tue Mar 31 2020 14:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46847 * 2 1 4 4 C 1.52994 * 109.47054 * 240.00205 * 2 1 3 5 5 O 1.42901 * 109.47484 * 59.99655 * 4 2 1 6 6 C 1.52992 * 109.47279 * 119.99897 * 2 1 3 7 7 C 1.53008 * 109.47385 * 300.00239 * 6 2 1 8 8 N 1.46500 * 109.47488 * 179.97438 * 7 6 2 9 9 S 1.65599 * 120.00214 * 164.99885 * 8 7 6 10 10 O 1.42099 * 106.39938 * 311.46446 * 9 8 7 11 11 O 1.42092 * 106.40136 * 178.53974 * 9 8 7 12 12 C 1.76199 * 107.21588 * 64.99779 * 9 8 7 13 13 C 1.38649 * 119.87924 * 270.25539 * 12 9 8 14 14 C 1.38617 * 120.50384 * 180.30415 * 13 12 9 15 15 C 1.37641 * 120.24556 * 359.44340 * 14 13 12 16 16 C 1.40700 * 119.74456 * 0.27362 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46564 * 60.00381 * 21 19 17 23 23 H 1.48498 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46916 * 300.00498 * 21 19 17 25 25 C 1.37604 * 119.87027 * 90.00133 * 12 9 8 26 26 H 1.09002 * 109.46846 * 299.99847 * 1 2 3 27 27 H 1.08999 * 109.46989 * 60.00216 * 1 2 3 28 28 H 1.08996 * 109.46410 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47209 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47758 * 300.00056 * 3 2 1 31 31 H 1.09003 * 109.47578 * 59.99966 * 3 2 1 32 32 H 1.09003 * 109.46998 * 179.97438 * 4 2 1 33 33 H 1.09003 * 109.47552 * 299.99385 * 4 2 1 34 34 H 0.96698 * 114.00141 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.47652 * 180.02562 * 6 2 1 36 36 H 1.09001 * 109.47451 * 60.00092 * 6 2 1 37 37 H 1.08994 * 109.46890 * 59.99842 * 7 6 2 38 38 H 1.09001 * 109.46706 * 300.00309 * 7 6 2 39 39 H 0.96998 * 119.99788 * 345.00004 * 8 7 6 40 40 H 1.08005 * 119.75337 * 0.03997 * 13 12 9 41 41 H 1.07992 * 119.88323 * 179.71839 * 14 13 12 42 42 H 1.07998 * 120.13267 * 180.25377 * 15 14 13 43 43 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 44 44 H 1.07994 * 120.13007 * 0.02562 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 6 2.0401 -0.7212 1.2492 7 6 1.5301 0.0000 2.4985 8 7 2.0179 -0.6909 3.6947 9 16 1.9439 0.0564 5.1706 10 8 2.4861 1.3573 4.9893 11 8 2.4535 -0.8731 6.1169 12 6 0.2394 0.2774 5.5584 13 6 -0.4144 1.4346 5.1634 14 6 -1.7535 1.6247 5.4670 15 6 -2.4521 0.6591 6.1555 16 6 -1.8005 -0.5217 6.5563 17 6 -2.5078 -1.5204 7.2645 18 1 -1.9748 -2.2110 7.9011 19 6 -3.8986 -1.6137 7.1407 20 7 -4.5060 -1.0369 6.1357 21 14 -4.8879 -2.5620 8.4102 22 1 -4.6871 -1.9532 9.7497 23 1 -6.3286 -2.5113 8.0538 24 1 -4.4342 -3.9758 8.4360 25 6 -0.4392 -0.7014 6.2476 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1301 -0.7208 -1.2494 33 1 1.6768 -1.7489 -1.2493 34 1 1.8493 -0.4509 -3.2472 35 1 3.1301 -0.7208 1.2495 36 1 1.6768 -1.7489 1.2492 37 1 0.4401 0.0000 2.4985 38 1 1.8933 1.0277 2.4984 39 1 2.3843 -1.5861 3.6222 40 1 0.1248 2.1955 4.6187 41 1 -2.2516 2.5318 5.1584 42 1 -3.4964 0.8073 6.3875 43 1 -5.4701 -1.1020 6.0497 44 1 0.0710 -1.6035 6.5511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590759190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:43 Heat of formation + Delta-G solvation = -152.028479 kcal Electronic energy + Delta-G solvation = -26066.076407 eV Core-core repulsion = 22301.260432 eV Total energy + Delta-G solvation = -3764.815975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.66160 -39.43677 -38.25861 -37.01914 -36.89924 -35.67048 -35.01078 -31.91344 -31.58407 -29.24343 -28.14357 -27.42569 -27.33153 -23.90269 -23.63728 -22.78501 -20.71036 -19.82618 -19.45613 -18.49150 -17.98638 -17.72609 -17.43608 -16.85929 -16.57494 -16.12062 -16.11192 -15.60572 -15.27112 -15.08024 -14.94158 -14.64727 -14.30132 -13.82243 -13.69710 -13.66714 -13.31368 -13.23043 -13.15951 -13.07890 -13.03078 -12.82110 -12.76151 -12.62456 -12.59530 -12.33173 -12.20737 -11.70997 -11.62269 -11.55915 -11.32190 -11.24502 -11.13924 -10.77141 -10.36543 -9.84828 -9.56263 -8.73387 -6.45368 -0.47699 0.40854 0.84797 1.37071 1.46244 1.49875 2.14001 2.17205 2.55545 2.78991 3.31721 3.51151 3.54415 3.81469 3.86655 4.16445 4.23310 4.29818 4.32241 4.44544 4.52811 4.59077 4.69121 4.70981 4.75762 4.84447 4.90366 4.92323 5.05424 5.05953 5.12080 5.13521 5.19998 5.26415 5.27698 5.41238 5.50651 5.53883 5.56584 5.88841 5.93798 6.09922 6.15815 6.52325 6.79541 6.84551 7.00492 8.24190 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003442 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.828927 B = 8132.807914 C = 9234.793085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.144 4.144 4 C 0.089 3.911 5 O -0.588 6.588 6 C -0.109 4.109 7 C 0.107 3.893 8 N -1.105 6.105 9 S 2.720 3.280 10 O -0.986 6.986 11 O -0.996 6.996 12 C -0.638 4.638 13 C -0.148 4.148 14 C -0.122 4.122 15 C -0.141 4.141 16 C 0.063 3.937 17 C -0.499 4.499 18 H 0.078 0.922 19 C 0.039 3.961 20 N -0.820 5.820 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.145 4.145 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.394 0.606 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.427 0.573 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.292 0.708 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 -0.898 -14.235 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 C -0.201 4.201 4 C 0.011 3.989 5 O -0.396 6.396 6 C -0.148 4.148 7 C -0.018 4.018 8 N -0.867 5.867 9 S 2.813 3.187 10 O -0.976 6.976 11 O -0.986 6.986 12 C -0.727 4.727 13 C -0.169 4.169 14 C -0.142 4.142 15 C -0.161 4.161 16 C 0.060 3.940 17 C -0.528 4.528 18 H 0.097 0.903 19 C -0.177 4.177 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.187 1.187 23 H -0.189 1.189 24 H -0.183 1.183 25 C -0.166 4.166 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.244 0.756 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.264 0.736 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.828 -0.050 -13.391 16.039 hybrid contribution -1.158 -1.134 0.138 1.627 sum 7.670 -1.185 -13.253 15.358 Atomic orbital electron populations 1.21889 0.94737 1.01869 1.01664 1.20522 0.95934 0.96304 0.93525 1.21892 1.01251 0.95155 1.01807 1.22165 0.97720 0.94534 0.84479 1.86435 1.77986 1.58116 1.17042 1.21738 1.02271 0.99828 0.91011 1.21605 0.99256 0.96896 0.84087 1.55173 1.78629 1.30623 1.22291 1.00734 0.73286 0.72511 0.72215 1.93492 1.77339 1.40706 1.86075 1.93499 1.79440 1.64404 1.61266 1.30260 1.24729 1.03436 1.14261 1.20455 0.95041 0.96652 1.04746 1.21140 0.94622 0.98905 0.99484 1.21642 1.00093 0.93246 1.01142 1.18036 0.91932 0.92888 0.91179 1.19838 0.93013 1.14565 1.25432 0.90342 1.26724 0.98765 0.95671 0.96533 1.69811 1.12280 1.36353 1.26109 0.85244 0.76966 0.79057 0.78463 1.18657 1.18883 1.18344 1.20858 0.95742 0.97854 1.02172 0.93067 0.92462 0.92636 0.91846 0.92454 0.92798 0.92251 0.92803 0.75627 0.89212 0.89799 0.91844 0.90045 0.73641 0.85114 0.85617 0.86915 0.89722 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 7.98 71.98 0.57 -2.49 16 2 C -0.06 -1.11 0.63 -52.19 -0.03 -1.14 16 3 C -0.14 -2.72 7.97 71.98 0.57 -2.15 16 4 C 0.09 1.24 5.91 71.98 0.43 1.67 16 5 O -0.59 -8.96 12.31 -148.98 -1.83 -10.79 16 6 C -0.11 -1.91 4.41 30.59 0.13 -1.77 16 7 C 0.11 2.58 5.52 86.38 0.48 3.06 16 8 N -1.10 -29.48 6.00 -187.48 -1.12 -30.60 16 9 S 2.72 98.52 5.73 -56.49 -0.32 98.20 16 10 O -0.99 -38.30 16.74 -128.00 -2.14 -40.45 16 11 O -1.00 -40.99 17.26 -128.00 -2.21 -43.20 16 12 C -0.64 -27.62 5.94 22.22 0.13 -27.49 16 13 C -0.15 -6.26 9.53 22.46 0.21 -6.05 16 14 C -0.12 -5.44 10.02 22.22 0.22 -5.22 16 15 C -0.14 -7.19 8.70 22.73 0.20 -6.99 16 16 C 0.06 3.35 5.58 -21.29 -0.12 3.23 16 17 C -0.50 -26.46 9.05 23.46 0.21 -26.25 16 18 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 19 C 0.04 1.90 5.14 85.25 0.44 2.34 16 20 N -0.82 -40.98 10.95 21.83 0.24 -40.74 16 21 Si 0.98 37.07 29.60 68.60 2.03 39.10 16 22 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 23 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 24 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 25 C -0.15 -7.13 9.26 22.73 0.21 -6.92 16 26 H 0.05 1.19 6.43 -2.39 -0.02 1.18 16 27 H 0.06 1.26 7.68 -2.39 -0.02 1.25 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.15 7.68 -2.39 -0.02 1.13 16 31 H 0.05 1.09 6.43 -2.39 -0.02 1.08 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.39 2.45 9.12 -74.06 -0.68 1.78 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.68 6.43 -2.39 -0.02 1.66 16 38 H 0.08 1.99 6.04 -2.39 -0.01 1.97 16 39 H 0.43 9.07 8.65 -96.75 -0.84 8.23 16 40 H 0.13 4.81 7.61 -2.91 -0.02 4.78 16 41 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 42 H 0.11 5.89 6.15 -2.91 -0.02 5.87 16 43 H 0.29 13.14 8.30 -92.70 -0.77 12.37 16 44 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -67.76 368.50 -2.19 -69.95 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: -0.48 Total: 34.71 kcal Atomic # 6 Polarization: -79.84 SS G_CDS: 3.66 Total: -76.18 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: -0.89 Total: -71.34 kcal Atomic # 8 Polarization: -88.25 SS G_CDS: -6.19 Total: -94.44 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 16 Polarization: 98.52 SS G_CDS: -0.32 Total: 98.20 kcal Total: -67.76 -2.19 -69.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590759190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.078 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds