Wall clock time and date at job start Tue Mar 31 2020 14:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.53002 * 109.46721 * 60.00236 * 3 2 1 5 5 C 1.52997 * 109.46944 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47300 * 185.00132 * 5 3 2 7 7 S 1.65597 * 120.00499 * 165.00283 * 6 5 3 8 8 O 1.42097 * 106.40398 * 178.54507 * 7 6 5 9 9 O 1.42100 * 106.39837 * 311.46482 * 7 6 5 10 10 C 1.76197 * 107.21756 * 65.00240 * 7 6 5 11 11 C 1.38666 * 119.87498 * 269.73046 * 10 7 6 12 12 C 1.38610 * 120.49978 * 179.72185 * 11 10 7 13 13 C 1.37640 * 120.24984 * 0.55126 * 12 11 10 14 14 C 1.40699 * 119.74251 * 359.72522 * 13 12 11 15 15 C 1.41395 * 120.24150 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99349 * 150.21685 * 15 14 13 17 17 C 1.39944 * 120.00249 * 330.22358 * 15 14 13 18 18 N 1.30822 * 120.00299 * 161.72728 * 17 15 14 19 19 Si 1.86803 * 119.99716 * 341.72193 * 17 15 14 20 20 H 1.48497 * 109.46996 * 95.41590 * 19 17 15 21 21 H 1.48508 * 109.46815 * 215.41167 * 19 17 15 22 22 H 1.48499 * 109.47211 * 335.41326 * 19 17 15 23 23 C 1.37593 * 119.87719 * 90.00090 * 10 7 6 24 24 O 1.42898 * 109.47442 * 300.00300 * 3 2 1 25 25 C 1.42901 * 113.99725 * 299.99853 * 24 3 2 26 26 H 1.09001 * 109.46928 * 59.99291 * 1 2 3 27 27 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46811 * 299.99768 * 1 2 3 29 29 H 1.09003 * 109.46811 * 240.00232 * 2 1 3 30 30 H 1.08998 * 109.47379 * 120.00458 * 2 1 3 31 31 H 1.09002 * 109.47042 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47505 * 299.99459 * 4 3 2 33 33 H 1.08998 * 109.47013 * 60.00051 * 4 3 2 34 34 H 1.08998 * 109.47585 * 305.00089 * 5 3 2 35 35 H 1.08998 * 109.47143 * 65.00623 * 5 3 2 36 36 H 0.97009 * 119.99676 * 345.00542 * 6 5 3 37 37 H 1.08001 * 119.74524 * 359.97438 * 11 10 7 38 38 H 1.08007 * 119.87442 * 180.25128 * 12 11 10 39 39 H 1.07999 * 120.12750 * 179.74612 * 13 12 11 40 40 H 0.96998 * 120.00142 * 179.97438 * 18 17 15 41 41 H 1.07990 * 120.12784 * 359.97438 * 23 10 7 42 42 H 1.08993 * 109.47156 * 300.00020 * 25 24 3 43 43 H 1.09004 * 109.46808 * 60.00313 * 25 24 3 44 44 H 1.09006 * 109.46635 * 179.97438 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 3.5700 1.4424 0.0006 6 7 4.0584 2.8184 0.1211 7 16 5.6403 3.1038 0.5192 8 8 5.8050 4.5152 0.5222 9 8 5.9243 2.2857 1.6458 10 6 6.6298 2.4902 -0.8033 11 6 7.0798 1.1789 -0.7785 12 6 7.8542 0.6811 -1.8147 13 6 8.1944 1.4888 -2.8760 14 6 7.7482 2.8228 -2.9090 15 6 8.0911 3.6617 -3.9943 16 1 7.4253 4.4582 -4.2924 17 6 9.2929 3.4599 -4.6823 18 7 9.4574 3.9707 -5.8754 19 14 10.6623 2.4612 -3.8969 20 1 10.5797 1.0543 -4.3647 21 1 11.9768 3.0346 -4.2825 22 1 10.5191 2.5009 -2.4194 23 6 6.9577 3.3157 -1.8541 24 8 1.5637 2.1162 -1.1667 25 6 1.9854 1.5199 -2.3950 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8938 3.1912 1.2496 32 1 0.4401 2.1638 1.2494 33 1 1.8934 1.6498 2.1392 34 1 3.9331 0.8531 0.8427 35 1 3.9337 1.0081 -0.9305 36 1 3.4551 3.5624 -0.0324 37 1 6.8216 0.5394 0.0527 38 1 8.1959 -0.3431 -1.7870 39 1 8.8013 1.1001 -3.6803 40 1 10.2906 3.8311 -6.3521 41 1 6.6095 4.3379 -1.8696 42 1 3.0742 1.5215 -2.4447 43 1 1.6208 0.4939 -2.4447 44 1 1.5822 2.0894 -3.2325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590761658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:59 Heat of formation + Delta-G solvation = -110.759350 kcal Electronic energy + Delta-G solvation = -26757.822397 eV Core-core repulsion = 22994.795986 eV Total energy + Delta-G solvation = -3763.026411 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.64759 -37.95780 -36.76764 -35.41106 -34.89335 -33.81983 -33.57675 -30.76538 -30.20497 -29.72852 -27.19570 -26.12053 -25.42114 -23.35329 -22.42232 -20.95196 -20.07329 -19.19122 -18.06976 -17.31579 -16.64716 -16.31773 -16.14057 -15.56383 -15.37798 -15.09937 -14.83627 -14.76525 -14.33148 -13.83103 -13.44291 -13.20604 -12.91993 -12.86825 -12.65691 -12.45949 -12.29236 -12.18689 -11.90667 -11.84502 -11.83118 -11.71902 -11.63664 -11.48908 -11.31344 -11.07600 -11.05860 -10.82765 -10.53489 -10.38084 -10.05133 -9.82653 -9.66873 -9.40017 -9.15513 -8.31756 -7.91964 -7.12051 -4.67661 0.89348 1.87301 2.37569 2.96425 3.09066 3.18100 3.38436 3.70390 3.82612 4.08290 4.29212 4.42644 4.59377 4.68280 4.91044 5.06633 5.11307 5.18644 5.30916 5.32038 5.41366 5.44329 5.53126 5.61868 5.70510 5.74296 5.77389 5.79621 5.85727 5.96460 5.99567 6.05407 6.16366 6.17170 6.42207 6.54441 6.82721 7.01903 7.09670 7.15779 7.19095 7.34963 7.58127 7.73695 8.14689 8.38803 8.57981 9.89759 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.003808 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.121101 B = 7351.561799 C = 7897.669708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.110 3.890 4 C -0.141 4.141 5 C 0.093 3.907 6 N -1.113 6.113 7 S 2.690 3.310 8 O -0.968 6.968 9 O -0.972 6.972 10 C -0.626 4.626 11 C -0.160 4.160 12 C -0.092 4.092 13 C -0.199 4.199 14 C 0.073 3.927 15 C -0.443 4.443 16 H 0.095 0.905 17 C 0.084 3.916 18 N -0.799 5.799 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.243 1.243 23 C -0.101 4.101 24 O -0.372 6.372 25 C 0.019 3.981 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.418 0.582 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.288 0.712 41 H 0.120 0.880 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.555 -7.714 7.988 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.189 4.189 3 C 0.069 3.931 4 C -0.198 4.198 5 C -0.034 4.034 6 N -0.873 5.873 7 S 2.784 3.216 8 O -0.958 6.958 9 O -0.962 6.962 10 C -0.717 4.717 11 C -0.181 4.181 12 C -0.111 4.111 13 C -0.218 4.218 14 C 0.069 3.931 15 C -0.471 4.471 16 H 0.113 0.887 17 C -0.136 4.136 18 N -0.422 5.422 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.213 1.213 22 H -0.166 1.166 23 C -0.122 4.122 24 O -0.291 6.291 25 C -0.077 4.077 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.253 0.747 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.138 0.862 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.142 -7.189 8.557 17.251 hybrid contribution 0.913 -0.737 -0.906 1.483 sum -12.229 -7.926 7.651 16.459 Atomic orbital electron populations 1.21724 0.94783 1.01352 1.02621 1.22095 0.97432 0.96093 1.03252 1.21692 0.91406 0.92611 0.87397 1.21806 1.01841 1.01307 0.94834 1.21869 0.95405 0.83130 1.02997 1.55455 1.29112 1.13283 1.89415 1.01698 0.72292 0.73168 0.74405 1.93558 1.85074 1.29771 1.87423 1.93515 1.83812 1.70402 1.48510 1.29972 1.18928 1.04582 1.18188 1.20057 1.04689 0.93638 0.99760 1.20700 0.97957 0.98172 0.94298 1.21299 1.06333 0.94449 0.99737 1.17791 0.91736 0.91780 0.91760 1.19527 1.04456 1.14088 1.08995 0.88658 1.26158 1.00167 0.93923 0.93346 1.69675 1.26720 1.36057 1.09790 0.86376 0.78698 0.79202 0.82523 1.19428 1.21279 1.16637 1.20857 1.01665 0.97492 0.92178 1.87957 1.73999 1.53884 1.13218 1.22874 1.00322 0.98199 0.86333 0.92103 0.92906 0.92271 0.91117 0.90530 0.91481 0.91367 0.90792 0.89439 0.90890 0.74664 0.87118 0.87935 0.87630 0.90147 0.86245 0.92880 0.93833 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.41 37.16 0.35 -0.78 16 2 C -0.15 -1.26 4.61 -26.73 -0.12 -1.39 16 3 C 0.11 1.12 0.48 -90.62 -0.04 1.07 16 4 C -0.14 -1.30 8.26 37.16 0.31 -1.00 16 5 C 0.09 1.11 4.94 -4.04 -0.02 1.09 16 6 N -1.11 -15.21 5.40 -10.61 -0.06 -15.27 16 7 S 2.69 47.64 5.74 -107.50 -0.62 47.02 16 8 O -0.97 -19.68 17.27 -57.17 -0.99 -20.67 16 9 O -0.97 -18.58 16.73 -57.17 -0.96 -19.54 16 10 C -0.63 -12.75 5.94 -39.66 -0.24 -12.98 16 11 C -0.16 -3.18 9.53 -39.29 -0.37 -3.55 16 12 C -0.09 -1.88 10.02 -39.66 -0.40 -2.27 16 13 C -0.20 -4.54 7.18 -38.87 -0.28 -4.82 16 14 C 0.07 1.79 5.11 -106.82 -0.55 1.25 16 15 C -0.44 -11.53 9.57 -37.74 -0.36 -11.89 16 16 H 0.10 2.58 8.06 -52.48 -0.42 2.16 16 17 C 0.08 2.13 5.40 -17.34 -0.09 2.03 16 18 N -0.80 -20.52 13.93 55.55 0.77 -19.74 16 19 Si 0.91 20.02 24.52 -169.99 -4.17 15.85 16 20 H -0.27 -5.65 6.71 56.52 0.38 -5.28 16 21 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.24 -5.57 6.86 56.52 0.39 -5.19 16 23 C -0.10 -2.30 9.26 -38.87 -0.36 -2.66 16 24 O -0.37 -4.23 9.48 -35.23 -0.33 -4.56 16 25 C 0.02 0.20 10.22 101.05 1.03 1.23 16 26 H 0.06 0.51 7.68 -51.93 -0.40 0.11 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 29 H 0.07 0.58 6.54 -51.93 -0.34 0.24 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.65 6.89 -51.93 -0.36 0.29 16 32 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.99 7.75 -51.93 -0.40 0.59 16 35 H 0.07 0.88 6.29 -51.93 -0.33 0.55 16 36 H 0.42 5.17 7.58 -34.47 -0.26 4.91 16 37 H 0.11 1.94 7.59 -52.49 -0.40 1.54 16 38 H 0.10 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.11 2.38 4.73 -52.49 -0.25 2.13 16 40 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 41 H 0.12 2.63 7.60 -52.49 -0.40 2.23 16 42 H 0.05 0.62 6.31 -51.93 -0.33 0.29 16 43 H 0.04 0.39 6.42 -51.93 -0.33 0.05 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -30.28 358.89 -8.25 -38.53 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.17 Total: 7.64 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: -1.14 Total: -34.67 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.72 Total: -35.01 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -2.28 Total: -44.77 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.17 Total: 15.85 kcal Atomic # 16 Polarization: 47.64 SS G_CDS: -0.62 Total: 47.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.28 -8.25 -38.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590761658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.225 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds