Wall clock time and date at job start Tue Mar 31 2020 14:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.53002 * 109.46721 * 60.00236 * 3 2 1 5 5 C 1.52997 * 109.46944 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47300 * 185.00132 * 5 3 2 7 7 S 1.65597 * 120.00499 * 165.00283 * 6 5 3 8 8 O 1.42097 * 106.40398 * 178.54507 * 7 6 5 9 9 O 1.42100 * 106.39837 * 311.46482 * 7 6 5 10 10 C 1.76197 * 107.21756 * 65.00240 * 7 6 5 11 11 C 1.38666 * 119.87498 * 269.73046 * 10 7 6 12 12 C 1.38610 * 120.49978 * 179.72185 * 11 10 7 13 13 C 1.37640 * 120.24984 * 0.55126 * 12 11 10 14 14 C 1.40699 * 119.74251 * 359.72522 * 13 12 11 15 15 C 1.41395 * 120.24150 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99349 * 150.21685 * 15 14 13 17 17 C 1.39944 * 120.00249 * 330.22358 * 15 14 13 18 18 N 1.30822 * 120.00299 * 161.72728 * 17 15 14 19 19 Si 1.86803 * 119.99716 * 341.72193 * 17 15 14 20 20 H 1.48497 * 109.46996 * 95.41590 * 19 17 15 21 21 H 1.48508 * 109.46815 * 215.41167 * 19 17 15 22 22 H 1.48499 * 109.47211 * 335.41326 * 19 17 15 23 23 C 1.37593 * 119.87719 * 90.00090 * 10 7 6 24 24 O 1.42898 * 109.47442 * 300.00300 * 3 2 1 25 25 C 1.42901 * 113.99725 * 299.99853 * 24 3 2 26 26 H 1.09001 * 109.46928 * 59.99291 * 1 2 3 27 27 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46811 * 299.99768 * 1 2 3 29 29 H 1.09003 * 109.46811 * 240.00232 * 2 1 3 30 30 H 1.08998 * 109.47379 * 120.00458 * 2 1 3 31 31 H 1.09002 * 109.47042 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47505 * 299.99459 * 4 3 2 33 33 H 1.08998 * 109.47013 * 60.00051 * 4 3 2 34 34 H 1.08998 * 109.47585 * 305.00089 * 5 3 2 35 35 H 1.08998 * 109.47143 * 65.00623 * 5 3 2 36 36 H 0.97009 * 119.99676 * 345.00542 * 6 5 3 37 37 H 1.08001 * 119.74524 * 359.97438 * 11 10 7 38 38 H 1.08007 * 119.87442 * 180.25128 * 12 11 10 39 39 H 1.07999 * 120.12750 * 179.74612 * 13 12 11 40 40 H 0.96998 * 120.00142 * 179.97438 * 18 17 15 41 41 H 1.07990 * 120.12784 * 359.97438 * 23 10 7 42 42 H 1.08993 * 109.47156 * 300.00020 * 25 24 3 43 43 H 1.09004 * 109.46808 * 60.00313 * 25 24 3 44 44 H 1.09006 * 109.46635 * 179.97438 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 3.5700 1.4424 0.0006 6 7 4.0584 2.8184 0.1211 7 16 5.6403 3.1038 0.5192 8 8 5.8050 4.5152 0.5222 9 8 5.9243 2.2857 1.6458 10 6 6.6298 2.4902 -0.8033 11 6 7.0798 1.1789 -0.7785 12 6 7.8542 0.6811 -1.8147 13 6 8.1944 1.4888 -2.8760 14 6 7.7482 2.8228 -2.9090 15 6 8.0911 3.6617 -3.9943 16 1 7.4253 4.4582 -4.2924 17 6 9.2929 3.4599 -4.6823 18 7 9.4574 3.9707 -5.8754 19 14 10.6623 2.4612 -3.8969 20 1 10.5797 1.0543 -4.3647 21 1 11.9768 3.0346 -4.2825 22 1 10.5191 2.5009 -2.4194 23 6 6.9577 3.3157 -1.8541 24 8 1.5637 2.1162 -1.1667 25 6 1.9854 1.5199 -2.3950 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8938 3.1912 1.2496 32 1 0.4401 2.1638 1.2494 33 1 1.8934 1.6498 2.1392 34 1 3.9331 0.8531 0.8427 35 1 3.9337 1.0081 -0.9305 36 1 3.4551 3.5624 -0.0324 37 1 6.8216 0.5394 0.0527 38 1 8.1959 -0.3431 -1.7870 39 1 8.8013 1.1001 -3.6803 40 1 10.2906 3.8311 -6.3521 41 1 6.6095 4.3379 -1.8696 42 1 3.0742 1.5215 -2.4447 43 1 1.6208 0.4939 -2.4447 44 1 1.5822 2.0894 -3.2325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590761658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:58 Heat of formation + Delta-G solvation = -132.368903 kcal Electronic energy + Delta-G solvation = -26758.759458 eV Core-core repulsion = 22994.795986 eV Total energy + Delta-G solvation = -3763.963472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47359 -39.69997 -38.30032 -36.94796 -35.91100 -35.65201 -34.37840 -32.55868 -31.90536 -30.47713 -28.08852 -27.25954 -26.90973 -24.12149 -24.11038 -22.69928 -20.97644 -20.57346 -19.67781 -18.61868 -18.10020 -17.66443 -17.18202 -16.98834 -16.66845 -16.37274 -16.27432 -15.68961 -15.58820 -15.29573 -14.84479 -14.69663 -14.19351 -14.06117 -13.77816 -13.60051 -13.52138 -13.38348 -13.21964 -13.15808 -13.10171 -13.07432 -12.89665 -12.68678 -12.57907 -12.55238 -12.16484 -12.04323 -11.80940 -11.72815 -11.57501 -11.29478 -11.09554 -10.59686 -10.30121 -10.01464 -9.70568 -8.98553 -6.61508 -0.55978 0.16286 0.63277 1.19253 1.34698 1.41702 2.01046 2.06760 2.39980 2.73297 2.88312 3.28146 3.37863 3.66691 3.86049 3.95369 4.16386 4.31634 4.34412 4.37431 4.43173 4.47320 4.56296 4.58434 4.74371 4.75749 4.77795 4.82453 4.85907 4.90071 5.00732 5.05054 5.12970 5.16351 5.19066 5.32414 5.41198 5.41747 5.52985 5.60949 5.74437 5.97475 6.04499 6.22422 6.32064 6.56463 6.67575 8.09772 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.003808 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.121101 B = 7351.561799 C = 7897.669708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.149 4.149 3 C 0.110 3.890 4 C -0.145 4.145 5 C 0.082 3.918 6 N -1.099 6.099 7 S 2.718 3.282 8 O -0.996 6.996 9 O -0.978 6.978 10 C -0.633 4.633 11 C -0.142 4.142 12 C -0.094 4.094 13 C -0.204 4.204 14 C 0.055 3.945 15 C -0.484 4.484 16 H 0.060 0.940 17 C 0.050 3.950 18 N -0.841 5.841 19 Si 0.956 3.044 20 H -0.246 1.246 21 H -0.274 1.274 22 H -0.256 1.256 23 C -0.123 4.123 24 O -0.384 6.384 25 C 0.017 3.983 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.425 0.575 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.109 0.891 40 H 0.296 0.704 41 H 0.111 0.889 42 H 0.038 0.962 43 H 0.060 0.940 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.229 -10.728 10.186 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.187 4.187 3 C 0.069 3.931 4 C -0.202 4.202 5 C -0.045 4.045 6 N -0.862 5.862 7 S 2.809 3.191 8 O -0.987 6.987 9 O -0.968 6.968 10 C -0.722 4.722 11 C -0.162 4.162 12 C -0.113 4.113 13 C -0.224 4.224 14 C 0.052 3.948 15 C -0.513 4.513 16 H 0.078 0.922 17 C -0.166 4.166 18 N -0.467 5.467 19 Si 0.779 3.221 20 H -0.171 1.171 21 H -0.200 1.200 22 H -0.180 1.180 23 C -0.144 4.144 24 O -0.304 6.304 25 C -0.079 4.079 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.263 0.737 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.129 0.871 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.808 -10.212 10.729 20.250 hybrid contribution 0.910 0.112 -1.401 1.674 sum -12.898 -10.101 9.328 18.852 Atomic orbital electron populations 1.21707 0.94207 1.02003 1.02345 1.22108 0.97874 0.94685 1.04038 1.21803 0.90045 0.93971 0.87292 1.21878 1.02571 1.00881 0.94841 1.22189 0.96939 0.81768 1.03554 1.55135 1.27298 1.14748 1.88996 1.00891 0.72660 0.72050 0.73449 1.93520 1.85926 1.31648 1.87570 1.93504 1.84527 1.70453 1.48296 1.30448 1.18938 1.04784 1.17988 1.20628 1.02147 0.93426 1.00018 1.21176 0.97128 0.99845 0.93158 1.21501 1.06132 0.93963 1.00765 1.17931 0.92563 0.92575 0.91727 1.19488 1.05516 1.14928 1.11411 0.92180 1.26794 1.01447 0.94851 0.93507 1.69700 1.27846 1.38228 1.10885 0.85627 0.76642 0.79205 0.80661 1.17102 1.20043 1.18025 1.20869 1.02599 0.97864 0.93063 1.87950 1.74067 1.54600 1.13745 1.22915 0.99392 0.99303 0.86329 0.93145 0.91798 0.91811 0.90969 0.89130 0.92307 0.90413 0.89570 0.88136 0.90937 0.73746 0.83728 0.83724 0.87323 0.89297 0.87130 0.94364 0.92137 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.41 71.98 0.68 -1.15 16 2 C -0.15 -2.05 4.61 30.60 0.14 -1.90 16 3 C 0.11 1.97 0.48 -10.79 -0.01 1.96 16 4 C -0.14 -2.32 8.26 71.98 0.59 -1.73 16 5 C 0.08 1.73 4.94 86.38 0.43 2.16 16 6 N -1.10 -28.16 5.40 -187.49 -1.01 -29.17 16 7 S 2.72 91.86 5.74 -56.49 -0.32 91.54 16 8 O -1.00 -40.19 17.27 -128.00 -2.21 -42.40 16 9 O -0.98 -34.44 16.73 -128.00 -2.14 -36.58 16 10 C -0.63 -24.90 5.94 22.22 0.13 -24.77 16 11 C -0.14 -5.11 9.53 22.46 0.21 -4.90 16 12 C -0.09 -3.51 10.02 22.22 0.22 -3.29 16 13 C -0.20 -9.07 7.18 22.73 0.16 -8.91 16 14 C 0.06 2.77 5.11 -21.29 -0.11 2.66 16 15 C -0.48 -26.74 9.57 23.46 0.22 -26.52 16 16 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 17 C 0.05 2.60 5.40 85.26 0.46 3.06 16 18 N -0.84 -45.05 13.93 21.83 0.30 -44.74 16 19 Si 0.96 41.10 24.52 68.60 1.68 42.78 16 20 H -0.25 -9.63 6.71 99.48 0.67 -8.96 16 21 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 22 H -0.26 -11.43 6.86 99.48 0.68 -10.75 16 23 C -0.12 -5.71 9.26 22.73 0.21 -5.50 16 24 O -0.38 -8.16 9.48 -148.98 -1.41 -9.57 16 25 C 0.02 0.33 10.22 113.37 1.16 1.49 16 26 H 0.05 0.74 7.68 -2.39 -0.02 0.73 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.74 6.43 -2.39 -0.02 0.73 16 29 H 0.07 0.97 6.54 -2.39 -0.02 0.96 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.03 6.89 -2.39 -0.02 1.02 16 32 H 0.08 1.10 6.43 -2.39 -0.02 1.08 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.90 7.75 -2.39 -0.02 1.88 16 35 H 0.07 1.57 6.29 -2.39 -0.02 1.55 16 36 H 0.43 10.03 7.58 -96.74 -0.73 9.30 16 37 H 0.15 4.29 7.59 -2.91 -0.02 4.27 16 38 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 39 H 0.11 4.72 4.73 -2.91 -0.01 4.70 16 40 H 0.30 14.17 8.30 -92.71 -0.77 13.40 16 41 H 0.11 5.17 7.60 -2.92 -0.02 5.15 16 42 H 0.04 0.86 6.31 -2.39 -0.02 0.84 16 43 H 0.06 0.97 6.42 -2.38 -0.02 0.95 16 44 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -66.52 358.89 -0.37 -66.90 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.23 Total: 28.57 kcal Atomic # 6 Polarization: -71.84 SS G_CDS: 4.51 Total: -67.33 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -0.71 Total: -73.91 kcal Atomic # 8 Polarization: -82.79 SS G_CDS: -5.76 Total: -88.55 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.68 Total: 42.78 kcal Atomic # 16 Polarization: 91.86 SS G_CDS: -0.32 Total: 91.54 kcal Total: -66.52 -0.37 -66.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590761658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.470 kcal (2) G-P(sol) polarization free energy of solvation -66.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds