Wall clock time and date at job start Tue Mar 31 2020 15:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47511 * 2 1 4 4 C 1.52999 * 109.47481 * 181.80462 * 3 2 1 5 5 C 1.53003 * 109.46967 * 61.80579 * 3 2 1 6 6 N 1.46499 * 109.47316 * 176.25651 * 5 3 2 7 7 S 1.65601 * 120.00036 * 165.49571 * 6 5 3 8 8 O 1.42102 * 106.40148 * 178.53877 * 7 6 5 9 9 O 1.42099 * 106.40072 * 311.45784 * 7 6 5 10 10 C 1.76195 * 107.21685 * 65.00237 * 7 6 5 11 11 C 1.38662 * 119.87519 * 269.72373 * 10 7 6 12 12 C 1.38616 * 120.50371 * 179.72298 * 11 10 7 13 13 C 1.37640 * 120.24416 * 0.55326 * 12 11 10 14 14 C 1.40701 * 119.74712 * 359.72645 * 13 12 11 15 15 C 1.41399 * 120.24369 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99497 * 208.80653 * 15 14 13 17 17 C 1.39946 * 119.99952 * 28.80655 * 15 14 13 18 18 N 1.30819 * 119.99992 * 10.53900 * 17 15 14 19 19 Si 1.86804 * 119.99761 * 190.53708 * 17 15 14 20 20 H 1.48495 * 109.46830 * 60.00180 * 19 17 15 21 21 H 1.48491 * 109.46925 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47240 * 300.00170 * 19 17 15 23 23 C 1.37600 * 119.88122 * 89.99839 * 10 7 6 24 24 O 1.42902 * 109.47399 * 301.80924 * 3 2 1 25 25 C 1.42907 * 113.99484 * 299.99793 * 24 3 2 26 26 H 1.09006 * 109.47091 * 301.81007 * 1 2 3 27 27 H 1.09005 * 109.47214 * 61.80346 * 1 2 3 28 28 H 1.08993 * 109.47806 * 181.80686 * 1 2 3 29 29 H 1.09011 * 109.46767 * 240.00232 * 2 1 3 30 30 H 1.08995 * 109.47062 * 120.00660 * 2 1 3 31 31 H 1.09001 * 109.46665 * 59.99946 * 4 3 2 32 32 H 1.08998 * 109.47310 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.46928 * 300.00098 * 4 3 2 34 34 H 1.08998 * 109.47039 * 296.25603 * 5 3 2 35 35 H 1.08996 * 109.47315 * 56.25138 * 5 3 2 36 36 H 0.97000 * 119.99583 * 345.49435 * 6 5 3 37 37 H 1.08007 * 119.74902 * 0.02562 * 11 10 7 38 38 H 1.07992 * 119.87634 * 180.25774 * 12 11 10 39 39 H 1.08000 * 120.12785 * 179.70571 * 13 12 11 40 40 H 0.97006 * 120.00007 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.12316 * 359.97438 * 23 10 7 42 42 H 1.08995 * 109.46866 * 180.02562 * 25 24 3 43 43 H 1.09005 * 109.47123 * 299.99665 * 25 24 3 44 44 H 1.08998 * 109.47452 * 59.99797 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5694 1.4427 -0.0454 5 6 1.5675 2.1504 1.2714 6 7 2.1295 3.5027 1.3149 7 16 1.5170 4.6202 2.3725 8 8 2.2860 5.8022 2.1971 9 8 0.1044 4.5826 2.2224 10 6 1.8601 4.0404 4.0005 11 6 0.9426 3.2311 4.6532 12 6 1.2017 2.7630 5.9319 13 6 2.3703 3.1070 6.5725 14 6 3.3061 3.9324 5.9222 15 6 4.5103 4.2919 6.5704 16 1 4.9924 5.2285 6.3328 17 6 5.0771 3.4339 7.5196 18 7 4.6157 2.2179 7.6604 19 14 6.4926 4.0252 8.5856 20 1 6.0561 5.2012 9.3802 21 1 6.9104 2.9347 9.5029 22 1 7.6368 4.4093 7.7206 23 6 3.0349 4.3970 4.6218 24 8 1.5294 2.1283 -1.1449 25 6 1.9143 1.5450 -2.3914 26 1 -0.3633 0.5417 0.8734 27 1 -0.3634 0.4856 -0.9058 28 1 -0.3634 -1.0270 0.0324 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.9060 0.9382 -0.9512 32 1 3.9327 2.4703 -0.0450 33 1 3.9589 0.9195 0.8280 34 1 0.4791 2.2091 1.2714 35 1 1.9011 1.5900 2.1447 36 1 2.8603 3.7433 0.7243 37 1 0.0211 2.9595 4.1595 38 1 0.4819 2.1299 6.4291 39 1 2.5682 2.7451 7.5706 40 1 5.0084 1.6233 8.3186 41 1 3.7464 5.0307 4.1132 42 1 1.4873 2.1236 -3.2105 43 1 3.0012 1.5472 -2.4734 44 1 1.5483 0.5195 -2.4411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590761659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:03 Heat of formation + Delta-G solvation = -112.540043 kcal Electronic energy + Delta-G solvation = -26609.701344 eV Core-core repulsion = 22846.597716 eV Total energy + Delta-G solvation = -3763.103628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.57999 -37.64337 -36.59900 -35.24222 -35.11385 -33.80646 -33.06949 -30.06078 -29.95989 -29.77591 -27.50074 -25.53753 -25.37694 -23.54539 -21.87594 -20.99898 -19.98640 -19.04485 -17.96180 -17.30576 -16.66684 -15.94328 -15.72735 -15.57383 -15.17611 -14.99792 -14.75857 -14.45147 -13.94980 -13.48077 -13.38233 -13.31516 -13.20259 -13.00788 -12.55764 -12.37046 -12.08860 -11.92365 -11.87400 -11.56837 -11.49807 -11.42485 -11.37107 -11.34853 -11.31758 -11.00217 -10.97587 -10.88505 -10.62511 -10.38866 -9.77385 -9.65396 -9.62665 -9.38506 -9.09750 -8.03308 -7.65706 -6.86548 -4.55175 1.08575 2.20007 2.63710 3.00135 3.03332 3.07468 3.56204 3.68833 3.84543 4.30511 4.46903 4.52106 4.64405 4.74119 5.06662 5.13261 5.16007 5.22974 5.32129 5.38865 5.46559 5.48987 5.54294 5.66223 5.69898 5.74429 5.83014 5.97932 6.03244 6.05515 6.15867 6.18833 6.22069 6.65305 6.76785 6.84848 7.05710 7.11739 7.21495 7.30606 7.37950 7.71876 7.82688 7.94956 8.41201 8.68521 8.72621 10.08402 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.003589 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.802162 B = 7799.432039 C = 8193.028937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.109 3.891 4 C -0.181 4.181 5 C 0.134 3.866 6 N -1.115 6.115 7 S 2.691 3.309 8 O -0.974 6.974 9 O -0.974 6.974 10 C -0.636 4.636 11 C -0.144 4.144 12 C -0.124 4.124 13 C -0.111 4.111 14 C 0.091 3.909 15 C -0.463 4.463 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.805 5.805 19 Si 0.915 3.085 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.118 4.118 24 O -0.368 6.368 25 C 0.023 3.977 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.414 0.586 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.282 0.718 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.325 -6.875 -12.810 14.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.069 3.931 4 C -0.239 4.239 5 C 0.008 3.992 6 N -0.874 5.874 7 S 2.786 3.214 8 O -0.964 6.964 9 O -0.964 6.964 10 C -0.728 4.728 11 C -0.165 4.165 12 C -0.143 4.143 13 C -0.130 4.130 14 C 0.087 3.913 15 C -0.492 4.492 16 H 0.099 0.901 17 C -0.143 4.143 18 N -0.431 5.431 19 Si 0.739 3.261 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.140 4.140 24 O -0.287 6.287 25 C -0.073 4.073 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.249 0.751 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.145 0.855 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.987 -6.201 -12.802 14.535 hybrid contribution 1.530 -0.605 0.757 1.811 sum -1.457 -6.806 -12.045 13.912 Atomic orbital electron populations 1.21786 0.94789 1.01549 1.03037 1.22106 0.97490 0.95911 1.03138 1.21701 0.93183 0.91697 0.86568 1.22431 0.95251 1.03249 1.02951 1.21311 0.99571 0.82483 0.95852 1.55469 1.51482 1.25111 1.55342 1.01605 0.73261 0.72599 0.73921 1.93533 1.71948 1.44448 1.86493 1.93508 1.30065 1.86439 1.86425 1.29805 1.05105 1.15945 1.21936 1.20132 0.97962 1.01396 0.96990 1.20837 0.97594 1.00641 0.95268 1.21703 0.91756 0.99615 0.99968 1.17697 0.92591 0.90880 0.90117 1.19576 1.06121 1.04894 1.18657 0.90078 1.25894 0.98256 0.94046 0.96146 1.69730 1.38537 1.05221 1.29596 0.86254 0.80773 0.79334 0.79746 1.18775 1.20295 1.18909 1.20848 0.94974 1.02546 0.95614 1.88047 1.74126 1.53495 1.13050 1.22790 0.99540 0.98514 0.86476 0.91805 0.92108 0.92768 0.91316 0.90340 0.92030 0.91321 0.90667 0.89399 0.89868 0.75123 0.87526 0.88343 0.85538 0.90678 0.87011 0.89904 0.93883 0.93874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.46 37.16 0.35 -1.12 16 2 C -0.15 -1.38 4.55 -26.74 -0.12 -1.50 16 3 C 0.11 1.22 0.53 -90.62 -0.05 1.17 16 4 C -0.18 -1.83 8.04 37.16 0.30 -1.54 16 5 C 0.13 1.82 4.96 -4.04 -0.02 1.80 16 6 N -1.11 -16.97 5.77 -10.61 -0.06 -17.03 16 7 S 2.69 51.56 5.74 -107.50 -0.62 50.94 16 8 O -0.97 -20.92 17.27 -57.17 -0.99 -21.91 16 9 O -0.97 -20.32 16.74 -57.17 -0.96 -21.28 16 10 C -0.64 -13.80 5.94 -39.66 -0.24 -14.03 16 11 C -0.14 -3.06 9.53 -39.29 -0.37 -3.44 16 12 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 13 C -0.11 -2.72 8.66 -38.87 -0.34 -3.06 16 14 C 0.09 2.32 5.55 -106.82 -0.59 1.73 16 15 C -0.46 -11.84 9.06 -37.74 -0.34 -12.18 16 16 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 17 C 0.07 1.76 5.26 -17.34 -0.09 1.67 16 18 N -0.80 -19.76 10.83 55.55 0.60 -19.16 16 19 Si 0.91 18.10 29.57 -169.99 -5.03 13.08 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 23 C -0.12 -2.83 9.26 -38.87 -0.36 -3.19 16 24 O -0.37 -4.41 9.56 -35.23 -0.34 -4.74 16 25 C 0.02 0.20 10.21 101.05 1.03 1.23 16 26 H 0.06 0.66 6.47 -51.93 -0.34 0.33 16 27 H 0.06 0.60 7.69 -51.93 -0.40 0.20 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.55 6.64 -51.92 -0.34 0.21 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 32 H 0.07 0.72 6.41 -51.93 -0.33 0.39 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.23 6.25 -51.93 -0.32 0.90 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.41 5.58 6.86 -34.48 -0.24 5.34 16 37 H 0.11 2.04 7.59 -52.48 -0.40 1.64 16 38 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.13 3.18 6.22 -52.49 -0.33 2.85 16 40 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 41 H 0.11 2.57 7.60 -52.48 -0.40 2.17 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.04 0.33 6.42 -51.93 -0.33 0.00 16 44 H 0.04 0.32 6.46 -51.93 -0.34 -0.01 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -30.64 363.91 -9.33 -39.97 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.19 Total: 10.23 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: -1.24 Total: -35.58 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.54 Total: -36.19 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -2.28 Total: -47.93 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 51.56 SS G_CDS: -0.62 Total: 50.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.64 -9.33 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590761659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.567 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds