Wall clock time and date at job start Tue Mar 31 2020 15:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47511 * 2 1 4 4 C 1.52999 * 109.47481 * 181.80462 * 3 2 1 5 5 C 1.53003 * 109.46967 * 61.80579 * 3 2 1 6 6 N 1.46499 * 109.47316 * 176.25651 * 5 3 2 7 7 S 1.65601 * 120.00036 * 165.49571 * 6 5 3 8 8 O 1.42102 * 106.40148 * 178.53877 * 7 6 5 9 9 O 1.42099 * 106.40072 * 311.45784 * 7 6 5 10 10 C 1.76195 * 107.21685 * 65.00237 * 7 6 5 11 11 C 1.38662 * 119.87519 * 269.72373 * 10 7 6 12 12 C 1.38616 * 120.50371 * 179.72298 * 11 10 7 13 13 C 1.37640 * 120.24416 * 0.55326 * 12 11 10 14 14 C 1.40701 * 119.74712 * 359.72645 * 13 12 11 15 15 C 1.41399 * 120.24369 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99497 * 208.80653 * 15 14 13 17 17 C 1.39946 * 119.99952 * 28.80655 * 15 14 13 18 18 N 1.30819 * 119.99992 * 10.53900 * 17 15 14 19 19 Si 1.86804 * 119.99761 * 190.53708 * 17 15 14 20 20 H 1.48495 * 109.46830 * 60.00180 * 19 17 15 21 21 H 1.48491 * 109.46925 * 180.02562 * 19 17 15 22 22 H 1.48492 * 109.47240 * 300.00170 * 19 17 15 23 23 C 1.37600 * 119.88122 * 89.99839 * 10 7 6 24 24 O 1.42902 * 109.47399 * 301.80924 * 3 2 1 25 25 C 1.42907 * 113.99484 * 299.99793 * 24 3 2 26 26 H 1.09006 * 109.47091 * 301.81007 * 1 2 3 27 27 H 1.09005 * 109.47214 * 61.80346 * 1 2 3 28 28 H 1.08993 * 109.47806 * 181.80686 * 1 2 3 29 29 H 1.09011 * 109.46767 * 240.00232 * 2 1 3 30 30 H 1.08995 * 109.47062 * 120.00660 * 2 1 3 31 31 H 1.09001 * 109.46665 * 59.99946 * 4 3 2 32 32 H 1.08998 * 109.47310 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.46928 * 300.00098 * 4 3 2 34 34 H 1.08998 * 109.47039 * 296.25603 * 5 3 2 35 35 H 1.08996 * 109.47315 * 56.25138 * 5 3 2 36 36 H 0.97000 * 119.99583 * 345.49435 * 6 5 3 37 37 H 1.08007 * 119.74902 * 0.02562 * 11 10 7 38 38 H 1.07992 * 119.87634 * 180.25774 * 12 11 10 39 39 H 1.08000 * 120.12785 * 179.70571 * 13 12 11 40 40 H 0.97006 * 120.00007 * 180.02562 * 18 17 15 41 41 H 1.08003 * 120.12316 * 359.97438 * 23 10 7 42 42 H 1.08995 * 109.46866 * 180.02562 * 25 24 3 43 43 H 1.09005 * 109.47123 * 299.99665 * 25 24 3 44 44 H 1.08998 * 109.47452 * 59.99797 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5694 1.4427 -0.0454 5 6 1.5675 2.1504 1.2714 6 7 2.1295 3.5027 1.3149 7 16 1.5170 4.6202 2.3725 8 8 2.2860 5.8022 2.1971 9 8 0.1044 4.5826 2.2224 10 6 1.8601 4.0404 4.0005 11 6 0.9426 3.2311 4.6532 12 6 1.2017 2.7630 5.9319 13 6 2.3703 3.1070 6.5725 14 6 3.3061 3.9324 5.9222 15 6 4.5103 4.2919 6.5704 16 1 4.9924 5.2285 6.3328 17 6 5.0771 3.4339 7.5196 18 7 4.6157 2.2179 7.6604 19 14 6.4926 4.0252 8.5856 20 1 6.0561 5.2012 9.3802 21 1 6.9104 2.9347 9.5029 22 1 7.6368 4.4093 7.7206 23 6 3.0349 4.3970 4.6218 24 8 1.5294 2.1283 -1.1449 25 6 1.9143 1.5450 -2.3914 26 1 -0.3633 0.5417 0.8734 27 1 -0.3634 0.4856 -0.9058 28 1 -0.3634 -1.0270 0.0324 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.9060 0.9382 -0.9512 32 1 3.9327 2.4703 -0.0450 33 1 3.9589 0.9195 0.8280 34 1 0.4791 2.2091 1.2714 35 1 1.9011 1.5900 2.1447 36 1 2.8603 3.7433 0.7243 37 1 0.0211 2.9595 4.1595 38 1 0.4819 2.1299 6.4291 39 1 2.5682 2.7451 7.5706 40 1 5.0084 1.6233 8.3186 41 1 3.7464 5.0307 4.1132 42 1 1.4873 2.1236 -3.2105 43 1 3.0012 1.5472 -2.4734 44 1 1.5483 0.5195 -2.4411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590761659.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:02 Heat of formation + Delta-G solvation = -132.938026 kcal Electronic energy + Delta-G solvation = -26610.585867 eV Core-core repulsion = 22846.597716 eV Total energy + Delta-G solvation = -3763.988151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.43166 -39.44620 -38.25131 -36.89868 -36.18871 -35.62180 -33.97620 -31.88884 -31.58248 -30.78377 -28.29218 -27.33351 -26.37932 -24.33151 -23.65267 -22.80007 -20.88383 -20.55547 -19.63350 -18.63433 -17.93097 -17.69635 -16.92128 -16.61409 -16.57017 -16.37089 -16.26333 -15.52585 -15.28270 -15.05685 -14.90734 -14.30147 -14.26632 -14.05624 -13.87916 -13.71005 -13.29978 -13.23385 -13.13507 -13.07390 -13.00187 -12.97803 -12.82049 -12.78144 -12.61932 -12.42719 -12.21779 -12.10287 -11.74150 -11.55100 -11.39685 -11.20517 -11.15949 -10.45832 -10.39103 -9.83568 -9.50612 -8.66594 -6.46336 -0.48322 0.40659 0.85022 1.38440 1.47515 1.49594 2.15443 2.19280 2.59742 2.75003 2.88276 3.44132 3.52594 3.68473 3.89074 3.89785 4.30783 4.37702 4.39542 4.44847 4.50387 4.57055 4.62910 4.67184 4.74034 4.79117 4.85821 4.90523 4.91501 4.92522 5.05885 5.08283 5.13840 5.22241 5.27509 5.30236 5.42091 5.47822 5.56478 5.88919 5.96401 6.09057 6.12178 6.36083 6.53989 6.82104 6.85805 8.30228 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.003589 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.802162 B = 7799.432039 C = 8193.028937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.145 4.145 3 C 0.112 3.888 4 C -0.183 4.183 5 C 0.123 3.877 6 N -1.101 6.101 7 S 2.719 3.281 8 O -0.998 6.998 9 O -0.987 6.987 10 C -0.640 4.640 11 C -0.141 4.141 12 C -0.124 4.124 13 C -0.131 4.131 14 C 0.062 3.938 15 C -0.501 4.501 16 H 0.076 0.924 17 C 0.037 3.963 18 N -0.829 5.829 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.261 1.261 23 C -0.139 4.139 24 O -0.392 6.392 25 C 0.017 3.983 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.423 0.577 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.290 0.710 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 -8.138 -13.797 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.183 4.183 3 C 0.071 3.929 4 C -0.240 4.240 5 C -0.003 4.003 6 N -0.864 5.864 7 S 2.812 3.188 8 O -0.988 6.988 9 O -0.977 6.977 10 C -0.729 4.729 11 C -0.161 4.161 12 C -0.143 4.143 13 C -0.151 4.151 14 C 0.059 3.941 15 C -0.531 4.531 16 H 0.094 0.906 17 C -0.177 4.177 18 N -0.456 5.456 19 Si 0.804 3.196 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.186 1.186 23 C -0.160 4.160 24 O -0.312 6.312 25 C -0.079 4.079 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.261 0.739 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.933 -7.474 -13.779 15.948 hybrid contribution 1.402 -0.262 0.925 1.700 sum -1.531 -7.736 -12.854 15.080 Atomic orbital electron populations 1.21792 0.95046 1.02196 1.02225 1.22108 0.97236 0.94706 1.04285 1.21662 0.93683 0.92197 0.85367 1.22452 0.94529 1.03091 1.03956 1.21573 0.99450 0.81490 0.97791 1.55131 1.51772 1.25455 1.54036 1.00752 0.72662 0.72291 0.73126 1.93494 1.72403 1.46321 1.86572 1.93488 1.31020 1.86786 1.86384 1.30211 1.04162 1.15030 1.23505 1.20511 0.98566 1.00344 0.96709 1.21167 0.97191 1.00372 0.95550 1.21706 0.92904 1.00592 0.99927 1.18035 0.93228 0.91774 0.91049 1.19816 1.07042 1.05540 1.20689 0.90561 1.26671 1.00562 0.93838 0.96669 1.69770 1.39693 1.05999 1.30105 0.85221 0.77434 0.78985 0.77936 1.18672 1.18940 1.18554 1.20907 0.96178 1.03433 0.95513 1.88005 1.74616 1.54411 1.14122 1.22978 1.00336 0.99277 0.85292 0.93033 0.92541 0.91374 0.89476 0.89862 0.90032 0.92024 0.90781 0.89753 0.89603 0.73920 0.84922 0.85334 0.86696 0.89909 0.87266 0.89143 0.92917 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.46 71.98 0.68 -1.99 16 2 C -0.15 -2.36 4.55 30.59 0.14 -2.22 16 3 C 0.11 2.29 0.53 -10.79 -0.01 2.28 16 4 C -0.18 -3.34 8.04 71.98 0.58 -2.77 16 5 C 0.12 3.18 4.96 86.38 0.43 3.61 16 6 N -1.10 -32.54 5.77 -187.49 -1.08 -33.62 16 7 S 2.72 102.78 5.74 -56.49 -0.32 102.45 16 8 O -1.00 -42.85 17.27 -128.00 -2.21 -45.06 16 9 O -0.99 -40.07 16.74 -128.00 -2.14 -42.21 16 10 C -0.64 -27.71 5.94 22.22 0.13 -27.57 16 11 C -0.14 -5.85 9.53 22.46 0.21 -5.64 16 12 C -0.12 -5.38 10.02 22.22 0.22 -5.15 16 13 C -0.13 -6.59 8.66 22.73 0.20 -6.40 16 14 C 0.06 3.29 5.55 -21.29 -0.12 3.17 16 15 C -0.50 -26.52 9.06 23.46 0.21 -26.30 16 16 H 0.08 3.93 7.87 -2.91 -0.02 3.91 16 17 C 0.04 1.80 5.26 85.26 0.45 2.25 16 18 N -0.83 -41.24 10.83 21.83 0.24 -41.01 16 19 Si 0.98 37.20 29.57 68.60 2.03 39.23 16 20 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 23 C -0.14 -6.83 9.26 22.73 0.21 -6.62 16 24 O -0.39 -8.64 9.56 -148.98 -1.42 -10.06 16 25 C 0.02 0.25 10.21 113.37 1.16 1.41 16 26 H 0.05 1.00 6.47 -2.38 -0.02 0.98 16 27 H 0.06 1.01 7.69 -2.38 -0.02 0.99 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.11 6.64 -2.38 -0.02 1.10 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.15 6.54 -2.39 -0.02 1.14 16 32 H 0.06 1.20 6.41 -2.39 -0.02 1.18 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 2.26 6.25 -2.39 -0.01 2.24 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.42 11.04 6.86 -96.74 -0.66 10.37 16 37 H 0.13 4.79 7.59 -2.91 -0.02 4.77 16 38 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.12 5.94 6.22 -2.91 -0.02 5.92 16 40 H 0.29 13.04 8.30 -92.70 -0.77 12.27 16 41 H 0.11 5.24 7.60 -2.91 -0.02 5.22 16 42 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.05 0.67 6.42 -2.38 -0.02 0.66 16 44 H 0.06 0.68 6.46 -2.39 -0.02 0.66 16 Total: -1.00 -65.92 363.91 -0.06 -65.98 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.36 Total: 36.23 kcal Atomic # 6 Polarization: -76.43 SS G_CDS: 4.50 Total: -71.94 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -0.85 Total: -74.63 kcal Atomic # 8 Polarization: -91.55 SS G_CDS: -5.78 Total: -97.33 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 102.78 SS G_CDS: -0.32 Total: 102.45 kcal Total: -65.92 -0.06 -65.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590761659.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.955 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds