Wall clock time and date at job start Tue Mar 31 2020 15:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47181 * 2 1 4 4 C 1.50695 * 109.47189 * 239.99989 * 2 1 3 5 5 H 1.08003 * 120.00412 * 240.00582 * 4 2 1 6 6 C 1.37881 * 120.00097 * 60.00379 * 4 2 1 7 7 N 1.31511 * 119.99873 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47219 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47081 * 119.99891 * 8 6 4 11 11 H 1.48504 * 109.46735 * 239.99561 * 8 6 4 12 12 C 1.53001 * 109.46814 * 120.00094 * 2 1 3 13 13 S 1.81402 * 109.47173 * 300.00119 * 12 2 1 14 14 O 1.42092 * 110.54531 * 68.37323 * 13 12 2 15 15 O 1.42102 * 110.53979 * 291.62294 * 13 12 2 16 16 N 1.65592 * 104.44953 * 180.02562 * 13 12 2 17 17 C 1.46507 * 120.00466 * 64.99722 * 16 13 12 18 18 C 1.50692 * 109.47540 * 165.00041 * 17 16 13 19 19 C 1.38229 * 120.00279 * 89.99805 * 18 17 16 20 20 C 1.38234 * 120.00615 * 180.02562 * 19 18 17 21 21 C 1.38239 * 119.99681 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00049 * 179.97438 * 21 20 19 23 23 O 1.42905 * 109.46972 * 90.00114 * 22 21 20 24 24 C 1.38236 * 119.99618 * 0.24824 * 21 20 19 25 25 C 1.38231 * 120.00348 * 359.49741 * 24 21 20 26 26 H 1.08996 * 109.47344 * 300.00467 * 1 2 3 27 27 H 1.09009 * 109.46925 * 59.99773 * 1 2 3 28 28 H 1.09000 * 109.47627 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47217 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47570 * 299.99813 * 3 2 1 31 31 H 1.09000 * 109.47229 * 60.00284 * 3 2 1 32 32 H 0.97000 * 120.00248 * 180.02562 * 7 6 4 33 33 H 1.08995 * 109.47306 * 179.97438 * 12 2 1 34 34 H 1.09001 * 109.47243 * 60.00081 * 12 2 1 35 35 H 0.97008 * 120.00327 * 244.99987 * 16 13 12 36 36 H 1.09005 * 109.46680 * 44.99624 * 17 16 13 37 37 H 1.08993 * 109.47006 * 285.00377 * 17 16 13 38 38 H 1.08006 * 120.00063 * 0.02562 * 19 18 17 39 39 H 1.07993 * 120.00649 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47247 * 330.00049 * 22 21 20 41 41 H 1.09001 * 109.47358 * 209.99475 * 22 21 20 42 42 H 0.96696 * 114.00036 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.99728 * 179.72715 * 24 21 20 44 44 H 1.08001 * 119.99970 * 180.22692 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2870 -3.6038 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1873 -4.8165 12 6 2.0399 -0.7213 1.2493 13 16 1.4352 0.1338 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0479 1.4099 2.8544 16 7 2.0539 -0.7401 3.9936 17 6 3.5024 -0.7965 4.2055 18 6 3.7878 -1.3243 5.5878 19 6 3.9381 -2.6832 5.7914 20 6 4.1994 -3.1675 7.0595 21 6 4.3098 -2.2927 8.1242 22 6 4.5940 -2.8207 9.5068 23 8 6.0068 -2.8755 9.7146 24 6 4.1538 -0.9342 7.9216 25 6 3.8978 -0.4496 6.6526 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 0.7083 1.1610 -3.4844 33 1 3.1299 -0.7217 1.2491 34 1 1.6766 -1.7490 1.2492 35 1 1.4572 -1.2148 4.5933 36 1 3.9236 0.2038 4.1043 37 1 3.9526 -1.4568 3.4644 38 1 3.8515 -3.3667 4.9597 39 1 4.3164 -4.2292 7.2187 40 1 4.1729 -3.8210 9.6075 41 1 4.1432 -2.1603 10.2477 42 1 6.2636 -3.2064 10.5861 43 1 4.2357 -0.2512 8.7542 44 1 3.7796 0.6121 6.4937 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592069476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:14 Heat of formation + Delta-G solvation = -127.837447 kcal Electronic energy + Delta-G solvation = -25709.913933 eV Core-core repulsion = 21946.146960 eV Total energy + Delta-G solvation = -3763.766973 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53881 -38.13589 -38.10411 -37.75943 -36.89052 -36.17140 -33.61991 -32.49960 -31.88525 -28.35945 -28.10610 -27.67305 -27.23369 -24.96844 -23.68994 -21.80188 -21.36509 -20.24902 -18.85426 -18.34591 -17.99558 -17.67071 -17.00959 -16.82727 -16.64489 -16.60264 -16.08009 -15.62979 -15.08710 -14.88195 -14.66682 -14.45978 -14.41027 -14.34674 -14.00290 -13.92791 -13.76212 -13.32949 -13.04536 -12.92578 -12.89596 -12.75400 -12.71453 -12.47975 -12.17532 -12.11906 -12.00688 -11.92452 -11.83124 -11.54919 -11.36894 -10.96228 -10.69171 -10.41124 -10.33182 -9.85659 -9.73755 -8.01991 -6.20301 -0.62691 0.23334 0.46986 1.43607 1.46816 1.56180 1.94238 2.44993 2.73475 2.87330 3.20457 3.33764 3.56003 3.71942 3.85359 4.02892 4.08462 4.18360 4.19170 4.21524 4.42920 4.51784 4.56021 4.59251 4.62481 4.79205 4.82807 4.88652 4.91266 5.01480 5.03202 5.10805 5.14444 5.40719 5.41474 5.52574 5.61601 5.64101 5.66410 5.99221 6.02615 6.08880 6.13589 6.35566 6.84991 6.91925 7.47975 8.98022 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.002608 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.800277 B =10732.972981 C =11360.240863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.068 3.932 3 C -0.160 4.160 4 C -0.513 4.513 5 H 0.064 0.936 6 C 0.015 3.985 7 N -0.908 5.908 8 Si 0.955 3.045 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.585 4.585 13 S 2.614 3.386 14 O -0.993 6.993 15 O -0.991 6.991 16 N -1.110 6.110 17 C 0.146 3.854 18 C -0.098 4.098 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.103 4.103 22 C 0.116 3.884 23 O -0.591 6.591 24 C -0.111 4.111 25 C -0.118 4.118 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.422 0.578 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.400 0.600 43 H 0.137 0.863 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -9.401 23.037 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.066 3.934 3 C -0.218 4.218 4 C -0.553 4.553 5 H 0.083 0.917 6 C -0.184 4.184 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.718 4.718 13 S 2.712 3.288 14 O -0.984 6.984 15 O -0.980 6.980 16 N -0.870 5.870 17 C 0.021 3.979 18 C -0.100 4.100 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.104 4.104 22 C 0.039 3.961 23 O -0.400 6.400 24 C -0.129 4.129 25 C -0.137 4.137 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.257 0.743 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.250 0.750 43 H 0.155 0.845 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.408 -8.168 22.290 24.868 hybrid contribution 0.119 -0.916 -0.603 1.103 sum 7.527 -9.083 21.686 24.687 Atomic orbital electron populations 1.22216 0.97855 1.00504 1.01300 1.17932 0.92285 0.92194 0.91001 1.22209 0.99913 0.98369 1.01328 1.21325 1.31438 1.12195 0.90306 0.91740 1.25692 0.95264 0.95689 1.01728 1.69954 1.37278 1.23782 1.23729 0.85558 0.77983 0.78737 0.79641 1.18860 1.21097 1.21066 1.30450 1.12753 1.13438 1.15148 1.04703 0.73433 0.74851 0.75800 1.93506 1.31525 1.87057 1.86271 1.93500 1.78436 1.40122 1.85989 1.55451 1.14642 1.70803 1.46111 1.20427 0.79597 1.02735 0.95135 1.19867 1.01322 0.94306 0.94526 1.21354 0.98727 0.94621 0.98149 1.21318 0.98709 1.00633 0.92030 1.20045 1.00386 0.93831 0.96121 1.21052 0.82001 1.00657 0.92370 1.86517 1.22598 1.89566 1.41319 1.21265 0.99009 0.95298 0.97325 1.21320 0.99285 1.00350 0.92706 0.94920 0.91138 0.94075 0.93956 0.91197 0.94830 0.92995 0.84213 0.84256 0.74278 0.89812 0.88577 0.83809 0.84041 0.91017 0.91335 0.74988 0.84543 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.97 7.77 71.98 0.56 -7.41 16 2 C 0.07 3.23 0.52 -52.93 -0.03 3.21 16 3 C -0.16 -7.90 7.77 71.98 0.56 -7.34 16 4 C -0.51 -26.37 8.01 25.60 0.21 -26.17 16 5 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 6 C 0.02 0.82 5.15 84.66 0.44 1.25 16 7 N -0.91 -50.28 9.35 21.45 0.20 -50.08 16 8 Si 0.95 41.96 29.54 68.60 2.03 43.98 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C -0.59 -21.31 5.01 71.98 0.36 -20.95 16 13 S 2.61 92.31 4.49 -56.49 -0.25 92.06 16 14 O -0.99 -40.80 15.70 -127.65 -2.00 -42.81 16 15 O -0.99 -40.35 15.11 -127.65 -1.93 -42.28 16 16 N -1.11 -27.93 5.88 -190.79 -1.12 -29.05 16 17 C 0.15 3.17 6.26 85.63 0.54 3.71 16 18 C -0.10 -1.98 5.28 -19.87 -0.10 -2.09 16 19 C -0.11 -1.92 9.70 22.27 0.22 -1.70 16 20 C -0.11 -1.78 9.70 22.27 0.22 -1.56 16 21 C -0.10 -1.74 5.51 -19.86 -0.11 -1.85 16 22 C 0.12 1.32 7.17 71.24 0.51 1.83 16 23 O -0.59 -7.86 13.64 -148.98 -2.03 -9.89 16 24 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 25 C -0.12 -2.38 9.70 22.27 0.22 -2.17 16 26 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 27 H 0.07 3.82 6.07 -2.38 -0.01 3.81 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 31 H 0.03 1.57 5.46 -2.39 -0.01 1.56 16 32 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 33 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 34 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 35 H 0.42 9.27 8.61 -96.74 -0.83 8.44 16 36 H 0.08 1.92 7.64 -2.38 -0.02 1.91 16 37 H 0.10 1.67 8.08 -2.39 -0.02 1.65 16 38 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 41 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 42 H 0.40 1.27 9.12 -74.06 -0.68 0.59 16 43 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 44 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -71.95 365.84 -1.81 -73.76 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.48 Total: 27.32 kcal Atomic # 6 Polarization: -66.80 SS G_CDS: 3.79 Total: -63.01 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -0.92 Total: -79.13 kcal Atomic # 8 Polarization: -89.01 SS G_CDS: -5.97 Total: -94.98 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 92.31 SS G_CDS: -0.25 Total: 92.06 kcal Total: -71.95 -1.81 -73.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592069476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.081 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds