Wall clock time and date at job start Tue Mar 31 2020 15:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42900 * 114.00161 * 2 1 4 4 H 1.09005 * 109.46794 * 30.62475 * 3 2 1 5 5 C 1.52990 * 109.47269 * 150.62814 * 3 2 1 6 6 S 1.81401 * 109.47372 * 300.00284 * 5 3 2 7 7 O 1.42107 * 110.54191 * 294.18077 * 6 5 3 8 8 O 1.42097 * 110.54337 * 70.93150 * 6 5 3 9 9 N 1.65599 * 104.45258 * 182.56039 * 6 5 3 10 10 C 1.38862 * 120.00174 * 60.31400 * 9 6 5 11 11 C 1.39562 * 119.84158 * 253.17892 * 10 9 6 12 12 C 1.36349 * 120.15745 * 179.72082 * 11 10 9 13 13 C 1.40882 * 119.83320 * 0.54441 * 12 11 10 14 14 C 1.41144 * 120.15245 * 179.70285 * 13 12 11 15 15 H 1.07998 * 119.99838 * 158.41969 * 14 13 12 16 16 C 1.39863 * 120.00122 * 338.41787 * 14 13 12 17 17 N 1.30905 * 120.00057 * 332.83357 * 16 14 13 18 18 Si 1.86798 * 120.00115 * 152.82731 * 16 14 13 19 19 H 1.48508 * 109.46614 * 94.96434 * 18 16 14 20 20 H 1.48498 * 109.47261 * 214.96451 * 18 16 14 21 21 H 1.48491 * 109.47318 * 334.96971 * 18 16 14 22 22 C 1.40887 * 119.69484 * 359.72720 * 13 12 11 23 23 C 1.36345 * 119.83150 * 359.97438 * 22 13 12 24 24 C 1.52999 * 109.46917 * 270.63135 * 3 2 1 25 25 C 1.53006 * 109.46841 * 178.96558 * 24 3 2 26 26 C 1.53000 * 109.47106 * 298.96013 * 24 3 2 27 27 H 1.09001 * 109.46818 * 184.55479 * 1 2 3 28 28 H 1.08998 * 109.46754 * 304.55409 * 1 2 3 29 29 H 1.08998 * 109.46848 * 64.55380 * 1 2 3 30 30 H 1.09005 * 109.47490 * 60.00087 * 5 3 2 31 31 H 1.08999 * 109.47487 * 179.97438 * 5 3 2 32 32 H 0.97001 * 120.00030 * 240.31824 * 9 6 5 33 33 H 1.07997 * 119.91925 * 359.97128 * 11 10 9 34 34 H 1.08000 * 120.08099 * 180.27541 * 12 11 10 35 35 H 0.96995 * 120.00543 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.08317 * 179.97438 * 22 13 12 37 37 H 1.07998 * 119.91462 * 179.97438 * 23 22 13 38 38 H 1.08997 * 109.47355 * 58.96572 * 24 3 2 39 39 H 1.08998 * 109.47225 * 61.05531 * 25 24 3 40 40 H 1.09002 * 109.46754 * 181.05445 * 25 24 3 41 41 H 1.09002 * 109.46902 * 301.05193 * 25 24 3 42 42 H 1.09001 * 109.46825 * 60.00194 * 26 24 3 43 43 H 1.09005 * 109.46929 * 179.97438 * 26 24 3 44 44 H 1.08997 * 109.47470 * 300.00488 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3502 1.9971 0.5235 5 6 3.3661 1.2601 0.7075 6 16 3.1374 0.7000 2.4176 7 8 2.3900 1.6544 3.1592 8 8 2.7996 -0.6799 2.4495 9 7 4.6537 0.7648 3.0800 10 6 5.3346 1.9736 3.1390 11 6 6.4100 2.2075 2.2809 12 6 7.0795 3.3943 2.3294 13 6 6.6904 4.3811 3.2566 14 6 7.3827 5.6096 3.3169 15 1 6.9060 6.4774 3.7481 16 6 8.6861 5.7030 2.8184 17 7 9.4547 4.6437 2.7929 18 14 9.3302 7.3395 2.1887 19 1 10.0738 8.0292 3.2735 20 1 10.2387 7.1041 1.0378 21 1 8.1902 8.1861 1.7544 22 6 5.6074 4.1357 4.1237 23 6 4.9433 2.9467 4.0598 24 6 2.2032 1.7778 -1.4424 25 6 2.8017 3.1859 -1.4422 26 6 3.1503 0.8213 -2.1699 27 1 -0.3633 -1.0244 0.0816 28 1 -0.3633 0.5829 0.8464 29 1 -0.3633 0.4415 -0.9280 30 1 4.0262 0.5684 0.1839 31 1 3.8097 2.2557 0.7071 32 1 5.0664 -0.0417 3.4268 33 1 6.7101 1.4482 1.5739 34 1 7.9087 3.5757 1.6617 35 1 10.3585 4.7083 2.4468 36 1 5.3041 4.8876 4.8372 37 1 4.1132 2.7570 4.7241 38 1 1.2398 1.7926 -1.9519 39 1 3.7737 3.1675 -0.9493 40 1 2.9218 3.5298 -2.4696 41 1 2.1360 3.8635 -0.9076 42 1 2.7239 -0.1819 -2.1700 43 1 3.2873 1.1576 -3.1977 44 1 4.1137 0.8065 -1.6605 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592351393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:03 Heat of formation + Delta-G solvation = -111.231667 kcal Electronic energy + Delta-G solvation = -26691.314200 eV Core-core repulsion = 22928.267308 eV Total energy + Delta-G solvation = -3763.046892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.06358 -38.02341 -36.52528 -35.44878 -35.24125 -34.78946 -32.89776 -30.33464 -29.63020 -28.82390 -27.32222 -26.53993 -24.78469 -24.34439 -21.22609 -20.82815 -19.87167 -18.83350 -17.56151 -17.24978 -16.99671 -16.86249 -16.24974 -15.45458 -15.31487 -14.88318 -14.71867 -14.24437 -14.05916 -13.73577 -13.63402 -13.15253 -12.99303 -12.86703 -12.32928 -12.23030 -12.14601 -11.96784 -11.86680 -11.59917 -11.50486 -11.49631 -11.37679 -11.34830 -11.15402 -10.99976 -10.96473 -10.72104 -10.63283 -10.44655 -10.09765 -9.92113 -9.61990 -9.32429 -8.77451 -7.71510 -7.49721 -7.06864 -4.51008 0.71809 2.53865 2.94513 2.96448 2.99235 3.07022 3.28364 3.51118 3.75845 4.12920 4.32947 4.48119 4.62482 4.74129 4.84768 5.09480 5.16670 5.21441 5.25688 5.43754 5.48334 5.52347 5.57198 5.61750 5.77313 5.85446 5.91093 5.99379 6.14292 6.23958 6.28197 6.29672 6.40173 6.82001 6.87650 6.95889 7.04393 7.13556 7.37249 7.45321 7.85426 7.92428 7.99621 8.11337 8.41876 8.66479 8.79832 9.87010 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.003740 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.861457 B = 7483.839134 C = 8482.729603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.103 3.897 4 H 0.075 0.925 5 C -0.631 4.631 6 S 2.601 3.399 7 O -0.961 6.961 8 O -0.967 6.967 9 N -1.035 6.035 10 C -0.049 4.049 11 C -0.083 4.083 12 C -0.177 4.177 13 C 0.120 3.880 14 C -0.450 4.450 15 H 0.084 0.916 16 C 0.081 3.919 17 N -0.766 5.766 18 Si 0.904 3.096 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.228 4.228 23 C -0.059 4.059 24 C -0.105 4.105 25 C -0.155 4.155 26 C -0.146 4.146 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.140 0.860 31 H 0.151 0.849 32 H 0.405 0.595 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.286 0.714 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -4.094 -8.703 13.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.298 6.298 3 C 0.044 3.956 4 H 0.093 0.907 5 C -0.758 4.758 6 S 2.696 3.304 7 O -0.951 6.951 8 O -0.957 6.957 9 N -0.789 5.789 10 C -0.145 4.145 11 C -0.105 4.105 12 C -0.197 4.197 13 C 0.117 3.883 14 C -0.478 4.478 15 H 0.103 0.897 16 C -0.141 4.141 17 N -0.389 5.389 18 Si 0.727 3.273 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.180 1.180 22 C -0.249 4.249 23 C -0.080 4.080 24 C -0.125 4.125 25 C -0.212 4.212 26 C -0.204 4.204 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.158 0.842 31 H 0.169 0.831 32 H 0.241 0.759 33 H 0.110 0.890 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.626 -4.540 -8.383 13.548 hybrid contribution 0.980 0.781 -0.670 1.421 sum -8.646 -3.759 -9.053 13.071 Atomic orbital electron populations 1.22902 0.80705 1.03341 1.00220 1.88029 1.20026 1.26737 1.94996 1.21798 0.91838 0.85353 0.96601 0.90688 1.30713 1.04716 1.14815 1.25596 1.05607 0.74014 0.74065 0.76732 1.93559 1.69989 1.64384 1.67155 1.93533 1.82559 1.32776 1.86820 1.52305 1.36931 1.14785 1.74854 1.16621 1.03076 0.87617 1.07163 1.20610 0.95314 0.96880 0.97677 1.20811 1.02511 0.94460 1.01913 1.17699 0.90052 0.92164 0.88382 1.19674 0.97601 0.96880 1.33613 0.89749 1.26018 0.96714 0.98477 0.92869 1.69911 1.07486 1.31402 1.30087 0.86368 0.79454 0.82136 0.79363 1.19306 1.19775 1.18021 1.20639 1.02682 0.97740 1.03810 1.20692 0.97766 0.93998 0.95571 1.21461 1.00033 0.96124 0.94883 1.21934 1.01924 0.95121 1.02215 1.21822 0.99551 0.99478 0.99507 0.89067 0.93639 0.93728 0.84220 0.83083 0.75881 0.89013 0.86866 0.90327 0.88441 0.88084 0.90852 0.91413 0.92222 0.92339 0.91916 0.92861 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.87 101.05 1.10 1.36 16 2 O -0.38 -5.19 8.86 -38.65 -0.34 -5.53 16 3 C 0.10 1.35 1.97 -26.74 -0.05 1.29 16 4 H 0.08 0.93 7.73 -51.93 -0.40 0.53 16 5 C -0.63 -8.99 4.92 37.15 0.18 -8.81 16 6 S 2.60 45.21 5.18 -107.50 -0.56 44.66 16 7 O -0.96 -19.42 16.84 -57.54 -0.97 -20.39 16 8 O -0.97 -18.49 17.54 -60.91 -1.07 -19.56 16 9 N -1.03 -18.45 5.56 32.51 0.18 -18.27 16 10 C -0.05 -1.01 5.62 -83.69 -0.47 -1.48 16 11 C -0.08 -1.75 9.90 -39.77 -0.39 -2.15 16 12 C -0.18 -4.16 8.69 -39.26 -0.34 -4.50 16 13 C 0.12 2.97 5.58 -106.79 -0.60 2.37 16 14 C -0.45 -10.99 8.98 -37.87 -0.34 -11.33 16 15 H 0.08 1.98 7.97 -52.49 -0.42 1.56 16 16 C 0.08 1.87 4.93 -17.34 -0.09 1.78 16 17 N -0.77 -18.13 11.37 55.54 0.63 -17.50 16 18 Si 0.90 16.99 29.64 -169.99 -5.04 11.95 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 C -0.23 -5.35 9.74 -39.26 -0.38 -5.73 16 23 C -0.06 -1.32 9.17 -39.77 -0.36 -1.68 16 24 C -0.11 -1.15 2.92 -90.62 -0.26 -1.42 16 25 C -0.15 -1.67 8.84 37.16 0.33 -1.35 16 26 C -0.15 -1.57 8.68 37.16 0.32 -1.25 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.46 7.98 -51.93 -0.41 0.04 16 29 H 0.04 0.37 7.89 -51.93 -0.41 -0.04 16 30 H 0.14 1.79 6.41 -51.92 -0.33 1.46 16 31 H 0.15 2.13 6.43 -51.92 -0.33 1.79 16 32 H 0.40 6.46 8.92 -34.47 -0.31 6.15 16 33 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.11 2.72 6.29 -52.49 -0.33 2.39 16 35 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 36 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.10 2.19 7.64 -52.49 -0.40 1.79 16 38 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 39 H 0.07 0.80 6.51 -51.93 -0.34 0.46 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.69 7.71 -51.93 -0.40 0.29 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.67 6.41 -51.93 -0.33 0.34 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -29.49 369.87 -9.45 -38.94 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.50 Total: 13.00 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: -1.36 Total: -32.89 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.81 Total: -35.77 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.38 Total: -45.48 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.04 Total: 11.95 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.56 Total: 44.66 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.49 -9.45 -38.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592351393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.288 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds