Wall clock time and date at job start Tue Mar 31 2020 14:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 116.99947 * 2 1 4 4 C 1.38758 * 120.06066 * 0.20838 * 3 2 1 5 5 C 1.38113 * 119.94421 * 180.23340 * 4 3 2 6 6 C 1.38284 * 120.05965 * 359.81358 * 5 4 3 7 7 C 1.50698 * 119.94666 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46979 * 239.97517 * 7 6 5 9 9 C 1.52995 * 109.47169 * 359.97128 * 7 6 5 10 10 C 1.52999 * 109.47830 * 119.97483 * 7 6 5 11 11 C 1.38244 * 120.11265 * 359.97143 * 6 5 4 12 12 C 1.38175 * 120.05154 * 359.97438 * 11 6 5 13 13 S 1.76200 * 120.02439 * 179.97438 * 12 11 6 14 14 O 1.42095 * 106.40602 * 1.45539 * 13 12 11 15 15 O 1.42101 * 106.39787 * 228.53753 * 13 12 11 16 16 N 1.65603 * 107.21932 * 114.99957 * 13 12 11 17 17 C 1.46498 * 119.99654 * 269.99628 * 16 13 12 18 18 C 1.36938 * 119.99833 * 89.99753 * 16 13 12 19 19 H 1.07994 * 120.00244 * 22.40815 * 18 16 13 20 20 C 1.38807 * 119.99487 * 202.40969 * 18 16 13 21 21 N 1.31621 * 120.00326 * 11.11552 * 20 18 16 22 22 Si 1.86806 * 119.99950 * 191.11614 * 20 18 16 23 23 H 1.48498 * 109.47210 * 59.99570 * 22 20 18 24 24 H 1.48500 * 109.47113 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46680 * 300.00071 * 22 20 18 26 26 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47322 * 300.00333 * 1 2 3 28 28 H 1.08995 * 109.46829 * 59.99805 * 1 2 3 29 29 H 1.07998 * 120.02371 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.96955 * 179.78795 * 5 4 3 31 31 H 1.08999 * 109.47254 * 59.99624 * 8 7 6 32 32 H 1.08998 * 109.47549 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.46771 * 299.99733 * 8 7 6 34 34 H 1.09003 * 109.47220 * 60.00503 * 9 7 6 35 35 H 1.09001 * 109.47324 * 180.02562 * 9 7 6 36 36 H 1.08999 * 109.47044 * 300.00363 * 9 7 6 37 37 H 1.09000 * 109.47133 * 59.99524 * 10 7 6 38 38 H 1.09001 * 109.47602 * 180.02562 * 10 7 6 39 39 H 1.09006 * 109.47067 * 300.00133 * 10 7 6 40 40 H 1.07996 * 119.97785 * 180.02562 * 11 6 5 41 41 H 1.09001 * 109.47042 * 94.21656 * 17 16 13 42 42 H 1.09001 * 109.46611 * 214.21687 * 17 16 13 43 43 H 1.09000 * 109.47172 * 334.21945 * 17 16 13 44 44 H 0.97007 * 119.99989 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3754 0.0044 5 6 1.9210 3.6047 -0.0005 6 6 3.3020 3.6757 -0.0059 7 6 3.9862 5.0184 -0.0106 8 6 4.8561 5.1431 -1.2631 9 6 2.9325 6.1277 -0.0091 10 6 4.8646 5.1478 1.2354 11 6 4.0561 2.5171 -0.0057 12 6 3.4311 1.2847 0.0003 13 16 4.3929 -0.1916 -0.0002 14 8 5.7539 0.2160 0.0272 15 8 3.8510 -1.0231 -1.0172 16 7 4.1069 -0.9635 1.4367 17 6 4.9463 -0.6760 2.6024 18 6 3.0858 -1.8707 1.5351 19 1 2.7062 -2.3549 0.6476 20 6 2.5387 -2.1677 2.7758 21 7 2.8415 -1.4293 3.8225 22 14 1.3727 -3.6155 2.9600 23 1 2.0703 -4.8661 2.5667 24 1 0.9316 -3.7190 4.3742 25 1 0.1898 -3.4126 2.0854 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2129 2.3204 0.0082 30 1 1.3341 4.5114 -0.0006 31 1 4.2303 5.0510 -2.1508 32 1 5.3507 6.1144 -1.2668 33 1 5.6068 4.3528 -1.2641 34 1 2.3127 6.0390 0.8832 35 1 3.4274 7.0989 -0.0130 36 1 2.3067 6.0356 -0.8968 37 1 5.6153 4.3575 1.2343 38 1 5.3591 6.1191 1.2321 39 1 4.2449 5.0590 2.1277 40 1 5.1345 2.5751 -0.0095 41 1 4.4739 0.0971 3.2084 42 1 5.0650 -1.5818 3.1969 43 1 5.9245 -0.3292 2.2691 44 1 2.4594 -1.6372 4.6896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592382619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:40 Heat of formation + Delta-G solvation = -82.390068 kcal Electronic energy + Delta-G solvation = -27806.185710 eV Core-core repulsion = 24044.389483 eV Total energy + Delta-G solvation = -3761.796227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.89455 -38.17592 -35.68092 -35.53076 -35.16861 -34.29639 -31.34763 -30.96325 -29.01594 -27.47139 -27.13748 -26.63702 -26.32912 -23.39958 -22.55295 -21.99473 -19.37234 -18.25947 -17.93203 -16.85519 -16.44624 -15.75654 -15.67112 -15.20573 -14.99669 -14.50489 -14.19894 -14.16697 -14.15418 -13.66221 -13.19165 -12.95895 -12.75781 -12.58348 -12.52817 -11.99927 -11.96483 -11.75963 -11.70618 -11.62113 -11.29300 -11.12207 -10.98887 -10.94912 -10.92963 -10.77261 -10.61911 -10.59153 -10.41274 -10.40611 -10.11125 -10.02769 -9.54890 -9.15604 -8.74877 -7.98699 -7.66187 -6.42958 -3.88286 1.47628 1.86312 1.93545 3.14657 3.17779 3.23447 3.77945 3.95877 4.08749 4.59785 4.74799 4.86016 4.90546 5.07337 5.16239 5.22226 5.28547 5.42288 5.47877 5.54280 5.58345 5.68871 5.71761 5.80933 5.87878 5.89868 5.95704 5.97044 6.04782 6.10416 6.15064 6.26337 6.40257 6.42313 6.49494 6.64993 6.71055 6.89987 6.95886 7.19268 7.23577 7.38692 7.54342 7.84454 8.42260 8.78896 9.25937 10.54143 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.005094 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.119176 B = 5495.343344 C = 5976.800079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.280 6.280 3 C 0.223 3.777 4 C -0.236 4.236 5 C -0.051 4.051 6 C -0.143 4.143 7 C -0.022 4.022 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.141 4.141 11 C 0.006 3.994 12 C -0.689 4.689 13 S 2.549 3.451 14 O -1.008 7.008 15 O -0.977 6.977 16 N -0.807 5.807 17 C 0.124 3.876 18 C -0.224 4.224 19 H 0.115 0.885 20 C 0.029 3.971 21 N -0.845 5.845 22 Si 0.924 3.076 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.270 1.270 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.135 0.865 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 10.226 -2.529 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.191 6.191 3 C 0.175 3.825 4 C -0.255 4.255 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.022 4.022 8 C -0.198 4.198 9 C -0.199 4.199 10 C -0.198 4.198 11 C -0.013 4.013 12 C -0.767 4.767 13 S 2.646 3.354 14 O -0.998 6.998 15 O -0.967 6.967 16 N -0.632 5.632 17 C -0.022 4.022 18 C -0.371 4.371 19 H 0.132 0.868 20 C -0.181 4.181 21 N -0.487 5.487 22 Si 0.750 3.250 23 H -0.194 1.194 24 H -0.208 1.208 25 H -0.195 1.195 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.152 0.848 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.803 9.999 -3.176 10.859 hybrid contribution -1.637 0.272 0.545 1.747 sum -4.441 10.271 -2.631 11.495 Atomic orbital electron populations 1.23020 0.79138 1.04012 1.00366 1.86400 1.20697 1.25457 1.86505 1.18392 0.90889 0.84612 0.88606 1.21226 0.99623 0.92734 1.11941 1.20953 0.94046 0.96719 0.95228 1.19688 0.93467 0.94351 1.06848 1.19365 0.95104 0.91717 0.95994 1.21927 0.99484 1.01626 0.96792 1.21944 0.98590 0.97614 1.01711 1.21923 0.99469 1.01576 0.96851 1.20543 0.99712 0.89857 0.91176 1.31489 1.05130 1.22529 1.17520 1.10586 0.74533 0.73042 0.77268 1.93311 1.35156 1.83391 1.87916 1.93365 1.79790 1.65392 1.58143 1.53965 1.39100 1.41585 1.28534 1.21279 0.90795 1.02300 0.87814 1.19891 1.12094 1.09677 0.95460 0.86766 1.25667 0.97248 0.99192 0.96035 1.70111 1.41260 1.36765 1.00525 0.86033 0.80354 0.81284 0.77375 1.19426 1.20846 1.19477 0.88132 0.92915 0.93339 0.85768 0.85901 0.92666 0.92611 0.92117 0.92415 0.92616 0.92530 0.92024 0.92676 0.92487 0.84750 0.93089 0.90820 0.93979 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 16 2 O -0.28 -5.99 7.83 -29.50 -0.23 -6.22 16 3 C 0.22 4.71 6.63 -39.22 -0.26 4.45 16 4 C -0.24 -4.12 9.04 -39.43 -0.36 -4.48 16 5 C -0.05 -0.81 8.97 -39.61 -0.36 -1.17 16 6 C -0.14 -2.36 4.76 -104.60 -0.50 -2.86 16 7 C -0.02 -0.28 0.85 -155.66 -0.13 -0.42 16 8 C -0.14 -1.73 8.29 37.16 0.31 -1.42 16 9 C -0.14 -1.52 7.13 37.16 0.26 -1.25 16 10 C -0.14 -1.78 8.29 37.16 0.31 -1.47 16 11 C 0.01 0.12 8.21 -39.60 -0.33 -0.20 16 12 C -0.69 -15.39 5.92 -39.43 -0.23 -15.62 16 13 S 2.55 63.42 5.26 -107.50 -0.56 62.86 16 14 O -1.01 -25.73 15.53 -57.17 -0.89 -26.62 16 15 O -0.98 -26.49 16.08 -62.59 -1.01 -27.49 16 16 N -0.81 -20.24 3.31 -66.69 -0.22 -20.47 16 17 C 0.12 2.91 8.92 59.85 0.53 3.44 16 18 C -0.22 -5.70 8.02 -15.06 -0.12 -5.82 16 19 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 20 C 0.03 0.71 5.13 -17.43 -0.09 0.62 16 21 N -0.85 -20.88 10.58 55.49 0.59 -20.29 16 22 Si 0.92 18.85 29.57 -169.99 -5.03 13.82 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.05 0.76 7.65 -51.93 -0.40 0.36 16 28 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 29 H 0.12 1.80 6.30 -52.49 -0.33 1.47 16 30 H 0.12 1.56 5.89 -52.48 -0.31 1.25 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.79 7.38 -51.93 -0.38 0.41 16 34 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 37 H 0.06 0.83 7.38 -51.93 -0.38 0.45 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.13 2.57 6.37 -52.49 -0.33 2.24 16 41 H 0.05 1.21 7.42 -51.93 -0.39 0.82 16 42 H 0.07 1.72 7.18 -51.93 -0.37 1.35 16 43 H 0.04 0.92 6.93 -51.93 -0.36 0.56 16 44 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -30.60 358.96 -8.39 -38.99 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -6.48 Total: 4.76 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 0.03 Total: -24.74 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.37 Total: -40.76 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -2.13 Total: -60.33 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 16 Polarization: 63.42 SS G_CDS: -0.56 Total: 62.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.60 -8.39 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592382619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.404 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds