Wall clock time and date at job start Tue Mar 31 2020 14:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 116.99947 * 2 1 4 4 C 1.38758 * 120.06066 * 0.20838 * 3 2 1 5 5 C 1.38113 * 119.94421 * 180.23340 * 4 3 2 6 6 C 1.38284 * 120.05965 * 359.81358 * 5 4 3 7 7 C 1.50698 * 119.94666 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46979 * 239.97517 * 7 6 5 9 9 C 1.52995 * 109.47169 * 359.97128 * 7 6 5 10 10 C 1.52999 * 109.47830 * 119.97483 * 7 6 5 11 11 C 1.38244 * 120.11265 * 359.97143 * 6 5 4 12 12 C 1.38175 * 120.05154 * 359.97438 * 11 6 5 13 13 S 1.76200 * 120.02439 * 179.97438 * 12 11 6 14 14 O 1.42095 * 106.40602 * 1.45539 * 13 12 11 15 15 O 1.42101 * 106.39787 * 228.53753 * 13 12 11 16 16 N 1.65603 * 107.21932 * 114.99957 * 13 12 11 17 17 C 1.46498 * 119.99654 * 269.99628 * 16 13 12 18 18 C 1.36938 * 119.99833 * 89.99753 * 16 13 12 19 19 H 1.07994 * 120.00244 * 22.40815 * 18 16 13 20 20 C 1.38807 * 119.99487 * 202.40969 * 18 16 13 21 21 N 1.31621 * 120.00326 * 11.11552 * 20 18 16 22 22 Si 1.86806 * 119.99950 * 191.11614 * 20 18 16 23 23 H 1.48498 * 109.47210 * 59.99570 * 22 20 18 24 24 H 1.48500 * 109.47113 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46680 * 300.00071 * 22 20 18 26 26 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47322 * 300.00333 * 1 2 3 28 28 H 1.08995 * 109.46829 * 59.99805 * 1 2 3 29 29 H 1.07998 * 120.02371 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.96955 * 179.78795 * 5 4 3 31 31 H 1.08999 * 109.47254 * 59.99624 * 8 7 6 32 32 H 1.08998 * 109.47549 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.46771 * 299.99733 * 8 7 6 34 34 H 1.09003 * 109.47220 * 60.00503 * 9 7 6 35 35 H 1.09001 * 109.47324 * 180.02562 * 9 7 6 36 36 H 1.08999 * 109.47044 * 300.00363 * 9 7 6 37 37 H 1.09000 * 109.47133 * 59.99524 * 10 7 6 38 38 H 1.09001 * 109.47602 * 180.02562 * 10 7 6 39 39 H 1.09006 * 109.47067 * 300.00133 * 10 7 6 40 40 H 1.07996 * 119.97785 * 180.02562 * 11 6 5 41 41 H 1.09001 * 109.47042 * 94.21656 * 17 16 13 42 42 H 1.09001 * 109.46611 * 214.21687 * 17 16 13 43 43 H 1.09000 * 109.47172 * 334.21945 * 17 16 13 44 44 H 0.97007 * 119.99989 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3754 0.0044 5 6 1.9210 3.6047 -0.0005 6 6 3.3020 3.6757 -0.0059 7 6 3.9862 5.0184 -0.0106 8 6 4.8561 5.1431 -1.2631 9 6 2.9325 6.1277 -0.0091 10 6 4.8646 5.1478 1.2354 11 6 4.0561 2.5171 -0.0057 12 6 3.4311 1.2847 0.0003 13 16 4.3929 -0.1916 -0.0002 14 8 5.7539 0.2160 0.0272 15 8 3.8510 -1.0231 -1.0172 16 7 4.1069 -0.9635 1.4367 17 6 4.9463 -0.6760 2.6024 18 6 3.0858 -1.8707 1.5351 19 1 2.7062 -2.3549 0.6476 20 6 2.5387 -2.1677 2.7758 21 7 2.8415 -1.4293 3.8225 22 14 1.3727 -3.6155 2.9600 23 1 2.0703 -4.8661 2.5667 24 1 0.9316 -3.7190 4.3742 25 1 0.1898 -3.4126 2.0854 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 0.2129 2.3204 0.0082 30 1 1.3341 4.5114 -0.0006 31 1 4.2303 5.0510 -2.1508 32 1 5.3507 6.1144 -1.2668 33 1 5.6068 4.3528 -1.2641 34 1 2.3127 6.0390 0.8832 35 1 3.4274 7.0989 -0.0130 36 1 2.3067 6.0356 -0.8968 37 1 5.6153 4.3575 1.2343 38 1 5.3591 6.1191 1.2321 39 1 4.2449 5.0590 2.1277 40 1 5.1345 2.5751 -0.0095 41 1 4.4739 0.0971 3.2084 42 1 5.0650 -1.5818 3.1969 43 1 5.9245 -0.3292 2.2691 44 1 2.4594 -1.6372 4.6896 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592382619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:38 Heat of formation + Delta-G solvation = -101.266011 kcal Electronic energy + Delta-G solvation = -27807.004232 eV Core-core repulsion = 24044.389483 eV Total energy + Delta-G solvation = -3762.614749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.27429 -39.47816 -37.70274 -37.41287 -36.44219 -36.35591 -33.22722 -32.38351 -30.35831 -28.48539 -28.23267 -28.10819 -27.82138 -25.30843 -23.95566 -23.37278 -20.73978 -20.03674 -19.37086 -18.77337 -18.26063 -17.31772 -17.17929 -16.61151 -16.31079 -16.28038 -16.03744 -15.46386 -15.12039 -15.05321 -14.89713 -14.53470 -14.21494 -13.84371 -13.76474 -13.59728 -13.17086 -13.14282 -13.03129 -12.95397 -12.81453 -12.69190 -12.63548 -12.55003 -12.49191 -12.32704 -12.08495 -12.04700 -11.90582 -11.85144 -11.61308 -11.52872 -11.20186 -10.96086 -10.23798 -9.86523 -9.08654 -8.25539 -5.81600 -0.09983 0.11979 0.44065 1.50026 1.55282 1.61706 2.28767 2.43258 2.53488 2.77969 3.03256 3.26325 3.61762 3.74127 3.93955 4.03231 4.08365 4.13213 4.30245 4.39938 4.41314 4.41473 4.60893 4.66309 4.71650 4.76057 4.78035 4.90505 4.90741 4.96688 5.02632 5.04147 5.04480 5.18343 5.22139 5.29258 5.32736 5.41112 5.43929 5.47795 5.62512 5.65120 5.85324 6.44380 6.52528 6.91274 7.37232 8.72791 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.005094 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.119176 B = 5495.343344 C = 5976.800079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.316 6.316 3 C 0.201 3.799 4 C -0.233 4.233 5 C -0.040 4.040 6 C -0.137 4.137 7 C -0.023 4.023 8 C -0.142 4.142 9 C -0.139 4.139 10 C -0.142 4.142 11 C -0.010 4.010 12 C -0.723 4.723 13 S 2.569 3.431 14 O -1.025 7.025 15 O -1.007 7.007 16 N -0.824 5.824 17 C 0.135 3.865 18 C -0.253 4.253 19 H 0.100 0.900 20 C 0.000 4.000 21 N -0.871 5.871 22 Si 0.980 3.020 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.259 1.259 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.158 0.842 30 H 0.167 0.833 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.127 0.873 41 H 0.042 0.958 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.558 12.810 -2.599 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.227 6.227 3 C 0.152 3.848 4 C -0.252 4.252 5 C -0.057 4.057 6 C -0.138 4.138 7 C -0.024 4.024 8 C -0.199 4.199 9 C -0.196 4.196 10 C -0.199 4.199 11 C -0.030 4.030 12 C -0.806 4.806 13 S 2.670 3.330 14 O -1.015 7.015 15 O -0.997 6.997 16 N -0.650 5.650 17 C -0.011 4.011 18 C -0.398 4.398 19 H 0.118 0.882 20 C -0.208 4.208 21 N -0.512 5.512 22 Si 0.803 3.197 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.183 1.183 26 H 0.126 0.874 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.176 0.824 30 H 0.184 0.816 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.145 0.855 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.845 12.527 -3.227 13.814 hybrid contribution -0.981 -0.338 0.468 1.138 sum -5.827 12.190 -2.759 13.789 Atomic orbital electron populations 1.23350 0.76702 1.05316 1.02243 1.86345 1.23468 1.26222 1.86713 1.18658 0.90744 0.85871 0.89495 1.21629 1.01212 0.91890 1.10469 1.21506 0.93986 0.97773 0.92471 1.20128 0.94083 0.94963 1.04643 1.19494 0.95901 0.90575 0.96387 1.21943 0.99120 1.02414 0.96436 1.21940 0.98005 0.97330 1.02345 1.21940 0.99080 1.02370 0.96530 1.20629 0.99746 0.90377 0.92202 1.30972 1.06042 1.21816 1.21786 1.09048 0.74017 0.73415 0.76547 1.93280 1.36234 1.83873 1.88089 1.93317 1.80262 1.67055 1.59106 1.53772 1.39890 1.43019 1.28304 1.21161 0.90803 1.01722 0.87393 1.19819 1.13096 1.11180 0.95670 0.88200 1.26303 0.98152 1.01143 0.95200 1.70184 1.42163 1.37986 1.00845 0.85186 0.78745 0.78098 0.77696 1.19507 1.20043 1.18316 0.87354 0.91616 0.90681 0.82448 0.81604 0.92551 0.90053 0.93992 0.91922 0.90548 0.91644 0.93968 0.90058 0.92910 0.85517 0.93906 0.91292 0.93292 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.81 113.37 1.11 1.66 16 2 O -0.32 -13.60 7.83 -82.73 -0.65 -14.25 16 3 C 0.20 8.43 6.63 22.51 0.15 8.58 16 4 C -0.23 -7.54 9.04 22.36 0.20 -7.33 16 5 C -0.04 -1.12 8.97 22.25 0.20 -0.92 16 6 C -0.14 -4.29 4.76 -19.85 -0.09 -4.38 16 7 C -0.02 -0.55 0.85 -52.93 -0.05 -0.59 16 8 C -0.14 -3.15 8.29 71.98 0.60 -2.56 16 9 C -0.14 -2.33 7.13 71.98 0.51 -1.81 16 10 C -0.14 -3.30 8.29 71.98 0.60 -2.71 16 11 C -0.01 -0.41 8.21 22.26 0.18 -0.23 16 12 C -0.72 -33.06 5.92 22.37 0.13 -32.92 16 13 S 2.57 133.50 5.26 -56.49 -0.30 133.20 16 14 O -1.02 -54.63 15.53 -128.00 -1.99 -56.62 16 15 O -1.01 -57.14 16.08 -122.82 -1.97 -59.12 16 16 N -0.82 -43.15 3.31 -364.91 -1.21 -44.35 16 17 C 0.14 6.60 8.92 127.77 1.14 7.74 16 18 C -0.25 -13.31 8.02 84.03 0.67 -12.64 16 19 H 0.10 5.41 7.16 -2.91 -0.02 5.39 16 20 C 0.00 -0.01 5.13 84.86 0.44 0.43 16 21 N -0.87 -43.76 10.58 21.65 0.23 -43.53 16 22 Si 0.98 38.68 29.57 68.60 2.03 40.71 16 23 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.07 1.76 7.65 -2.39 -0.02 1.74 16 28 H 0.07 1.81 7.67 -2.39 -0.02 1.79 16 29 H 0.16 3.93 6.30 -2.91 -0.02 3.91 16 30 H 0.17 3.27 5.89 -2.91 -0.02 3.25 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.04 1.07 7.38 -2.39 -0.02 1.05 16 34 H 0.06 1.01 7.51 -2.39 -0.02 0.99 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.00 7.51 -2.39 -0.02 0.98 16 37 H 0.04 1.13 7.38 -2.39 -0.02 1.11 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.05 1.25 8.14 -2.38 -0.02 1.24 16 40 H 0.13 5.07 6.37 -2.91 -0.02 5.06 16 41 H 0.04 2.11 7.42 -2.39 -0.02 2.09 16 42 H 0.07 3.36 7.18 -2.39 -0.02 3.34 16 43 H 0.05 2.25 6.93 -2.39 -0.02 2.23 16 44 H 0.27 12.91 8.31 -92.70 -0.77 12.14 16 Total: -1.00 -68.91 358.96 2.94 -65.97 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 1.00 Total: 25.68 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 5.79 Total: -47.69 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -0.98 Total: -87.89 kcal Atomic # 8 Polarization: -125.37 SS G_CDS: -4.61 Total: -129.98 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Atomic # 16 Polarization: 133.50 SS G_CDS: -0.30 Total: 133.20 kcal Total: -68.91 2.94 -65.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592382619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.292 kcal (2) G-P(sol) polarization free energy of solvation -68.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds