Wall clock time and date at job start Tue Mar 31 2020 15:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47217 * 2 1 4 4 H 1.08994 * 109.47324 * 304.99831 * 3 2 1 5 5 C 1.53007 * 109.46934 * 184.99775 * 3 2 1 6 6 O 1.42902 * 109.47197 * 65.00179 * 3 2 1 7 7 C 1.35902 * 117.00019 * 204.85938 * 6 3 2 8 8 C 1.38749 * 120.05545 * 354.56079 * 7 6 3 9 9 C 1.38115 * 119.94165 * 179.97438 * 8 7 6 10 10 C 1.38285 * 120.06077 * 0.02562 * 9 8 7 11 11 C 1.38245 * 120.11079 * 359.97438 * 10 9 8 12 12 S 1.76193 * 119.97556 * 180.02562 * 11 10 9 13 13 O 1.42099 * 106.40661 * 203.54325 * 12 11 10 14 14 O 1.42104 * 106.40032 * 336.46374 * 12 11 10 15 15 N 1.65601 * 107.21675 * 90.00259 * 12 11 10 16 16 C 1.46497 * 119.99878 * 65.00523 * 15 12 11 17 17 H 1.09003 * 109.47315 * 24.99443 * 16 15 12 18 18 C 1.53003 * 109.46822 * 264.99863 * 16 15 12 19 19 C 1.50695 * 109.47349 * 144.99916 * 16 15 12 20 20 H 1.08005 * 120.00013 * 5.26261 * 19 16 15 21 21 C 1.37879 * 119.99919 * 185.26100 * 19 16 15 22 22 N 1.31506 * 120.00402 * 6.64715 * 21 19 16 23 23 Si 1.86810 * 119.99928 * 186.64449 * 21 19 16 24 24 H 1.48499 * 109.46909 * 84.98882 * 23 21 19 25 25 H 1.48498 * 109.47064 * 204.99245 * 23 21 19 26 26 H 1.48502 * 109.47114 * 324.99086 * 23 21 19 27 27 C 1.38172 * 120.05478 * 359.97438 * 11 10 9 28 28 H 1.08992 * 109.47611 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46676 * 300.00220 * 1 2 3 30 30 H 1.09001 * 109.46730 * 59.99564 * 1 2 3 31 31 H 1.09003 * 109.47176 * 239.99953 * 2 1 3 32 32 H 1.09003 * 109.47197 * 120.00202 * 2 1 3 33 33 H 1.08993 * 109.46666 * 60.00408 * 5 3 2 34 34 H 1.08999 * 109.46867 * 180.02562 * 5 3 2 35 35 H 1.08994 * 109.47161 * 300.00156 * 5 3 2 36 36 H 1.08002 * 120.02776 * 0.26022 * 8 7 6 37 37 H 1.08006 * 119.96993 * 180.02562 * 9 8 7 38 38 H 1.07998 * 119.94591 * 180.02562 * 10 9 8 39 39 H 0.96998 * 120.00370 * 244.99769 * 15 12 11 40 40 H 1.08998 * 109.46943 * 303.72093 * 18 16 15 41 41 H 1.08997 * 109.47497 * 63.72360 * 18 16 15 42 42 H 1.09000 * 109.47186 * 183.72306 * 18 16 15 43 43 H 0.96997 * 120.00266 * 179.97438 * 22 21 19 44 44 H 1.07995 * 120.02831 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 8 1.6620 2.0814 1.2211 7 6 1.5551 3.4361 1.2012 8 6 1.9170 4.1451 0.0649 9 6 1.8069 5.5218 0.0471 10 6 1.3369 6.1935 1.1607 11 6 0.9756 5.4894 2.2942 12 16 0.3765 6.3488 3.7108 13 8 0.6169 5.5013 4.8258 14 8 0.8808 7.6742 3.6190 15 7 -1.2683 6.4625 3.5559 16 6 -2.0913 5.2507 3.5758 17 1 -1.5677 4.4647 4.1199 18 6 -2.3545 4.7894 2.1409 19 6 -3.4028 5.5453 4.2572 20 1 -3.6386 6.5545 4.5614 21 6 -4.3016 4.5266 4.4922 22 7 -3.9635 3.2805 4.2424 23 14 -6.0000 4.9163 5.1658 24 1 -6.9083 5.2676 4.0448 25 1 -6.5329 3.7294 5.8816 26 1 -5.9085 6.0618 6.1063 27 6 1.0829 4.1120 2.3167 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8532 0.9570 -1.0570 34 1 3.9283 2.4719 -0.1252 35 1 3.9995 0.9052 0.7161 36 1 2.2802 3.6206 -0.8066 37 1 2.0881 6.0741 -0.8374 38 1 1.2511 7.2700 1.1446 39 1 -1.6868 7.3313 3.4521 40 1 -2.8186 5.5993 1.5782 41 1 -1.4114 4.5132 1.6693 42 1 -3.0209 3.9269 2.1529 43 1 -4.5957 2.5638 4.4081 44 1 0.8009 3.5624 3.2025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594752093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:02 Heat of formation + Delta-G solvation = -100.604468 kcal Electronic energy + Delta-G solvation = -26716.472269 eV Core-core repulsion = 22953.886206 eV Total energy + Delta-G solvation = -3762.586062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35886 -37.82723 -36.68932 -35.42134 -35.27358 -34.29614 -32.16366 -31.32295 -30.16213 -29.72844 -28.37997 -25.20503 -24.25923 -23.48226 -22.49043 -21.03500 -20.93810 -19.19167 -18.27927 -17.37297 -16.48874 -16.17741 -16.06345 -15.76194 -15.40987 -15.12180 -14.58960 -14.30401 -13.95259 -13.75519 -13.55028 -13.51866 -13.34407 -12.66068 -12.64752 -12.29102 -12.19842 -11.91107 -11.86890 -11.70730 -11.63291 -11.50298 -11.33744 -11.27401 -11.19873 -10.94647 -10.87847 -10.76029 -10.63548 -10.45188 -10.35659 -10.07592 -9.33268 -9.16861 -8.57885 -8.31492 -8.20920 -6.12657 -4.17260 0.81460 1.10163 1.43827 3.10841 3.27908 3.34529 3.37147 3.48142 3.83479 4.31347 4.38507 4.43625 4.63720 4.72856 4.76326 4.86063 4.97044 5.11665 5.16854 5.21495 5.30667 5.35335 5.38795 5.50253 5.54893 5.65762 5.82499 5.86076 5.91604 5.99568 6.16739 6.25945 6.27850 6.30859 6.35352 6.63330 6.69336 6.81901 6.96049 7.42311 7.56125 7.59314 7.85847 7.95974 8.26098 8.84971 9.47491 10.95630 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.004591 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.529810 B = 6097.524722 C = 7932.541126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C 0.078 3.922 4 H 0.072 0.928 5 C -0.181 4.181 6 O -0.302 6.302 7 C 0.112 3.888 8 C -0.165 4.165 9 C -0.106 4.106 10 C -0.060 4.060 11 C -0.627 4.627 12 S 2.688 3.312 13 O -0.957 6.957 14 O -0.980 6.980 15 N -1.097 6.097 16 C 0.266 3.734 17 H 0.058 0.942 18 C -0.154 4.154 19 C -0.523 4.523 20 H 0.065 0.935 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.899 3.101 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.042 4.042 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.409 0.591 40 H 0.035 0.965 41 H 0.017 0.983 42 H 0.079 0.921 43 H 0.265 0.735 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.944 -3.005 -12.468 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.090 0.910 5 C -0.239 4.239 6 O -0.216 6.216 7 C 0.066 3.934 8 C -0.184 4.184 9 C -0.125 4.125 10 C -0.080 4.080 11 C -0.712 4.712 12 S 2.776 3.224 13 O -0.947 6.947 14 O -0.970 6.970 15 N -0.858 5.858 16 C 0.162 3.838 17 H 0.075 0.925 18 C -0.213 4.213 19 C -0.562 4.562 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.523 5.523 23 Si 0.726 3.274 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.061 4.061 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.243 0.757 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 12.453 -3.236 -11.606 17.327 hybrid contribution -1.111 0.096 -0.803 1.374 sum 11.341 -3.140 -12.409 17.102 Atomic orbital electron populations 1.21784 0.94667 1.02051 1.02928 1.21624 0.97242 0.93586 1.03026 1.22532 0.94819 0.94304 0.86124 0.90960 1.22399 0.95407 1.03073 1.02991 1.86178 1.83865 1.16265 1.35280 1.18971 0.96984 0.82831 0.94564 1.21492 1.03530 0.95477 0.97874 1.20993 0.99436 0.93585 0.98439 1.20775 0.95698 1.00111 0.91390 1.31170 1.14680 1.04901 1.20420 1.01985 0.73314 0.73068 0.74075 1.93584 1.84860 1.68881 1.47348 1.93522 1.79767 1.36361 1.87358 1.55515 1.23193 1.16847 1.90250 1.18647 0.91031 0.80789 0.93304 0.92455 1.22238 0.99349 1.01782 0.97960 1.21175 1.00697 0.95113 1.39256 0.91706 1.24911 0.98798 0.94803 0.95233 1.69925 1.35456 0.98838 1.48123 0.86503 0.83890 0.77958 0.79014 1.20541 1.21174 1.19815 1.20225 0.96085 0.91951 0.97878 0.92400 0.91246 0.92904 0.90285 0.90657 0.91071 0.91880 0.91235 0.85053 0.85241 0.84361 0.75651 0.94619 0.96353 0.90240 0.92563 0.83263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.81 37.16 0.36 -1.31 16 2 C -0.12 -1.09 5.64 -26.73 -0.15 -1.24 16 3 C 0.08 0.81 2.23 -26.73 -0.06 0.75 16 4 H 0.07 0.69 6.31 -51.93 -0.33 0.37 16 5 C -0.18 -1.53 9.17 37.16 0.34 -1.19 16 6 O -0.30 -4.33 9.34 -19.43 -0.18 -4.51 16 7 C 0.11 1.71 6.60 -39.22 -0.26 1.45 16 8 C -0.16 -2.08 8.24 -39.44 -0.32 -2.41 16 9 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 10 C -0.06 -0.88 9.52 -39.56 -0.38 -1.26 16 11 C -0.63 -10.76 5.16 -39.60 -0.20 -10.97 16 12 S 2.69 51.88 5.72 -107.50 -0.61 51.27 16 13 O -0.96 -21.54 16.62 -57.17 -0.95 -22.49 16 14 O -0.98 -19.35 17.28 -57.17 -0.99 -20.33 16 15 N -1.10 -22.15 5.46 -5.88 -0.03 -22.19 16 16 C 0.27 6.37 2.76 -69.08 -0.19 6.18 16 17 H 0.06 1.52 7.47 -51.93 -0.39 1.13 16 18 C -0.15 -3.43 9.39 37.16 0.35 -3.08 16 19 C -0.52 -13.72 8.69 -34.44 -0.30 -14.02 16 20 H 0.06 1.65 7.82 -52.48 -0.41 1.24 16 21 C 0.07 1.76 5.22 -17.82 -0.09 1.66 16 22 N -0.89 -24.42 12.01 55.43 0.67 -23.76 16 23 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.04 -0.73 8.44 -39.43 -0.33 -1.06 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.92 7.82 -51.93 -0.41 0.52 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.55 6.91 -51.93 -0.36 0.19 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.13 1.28 5.43 -52.49 -0.29 0.99 16 37 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.14 1.81 7.61 -52.49 -0.40 1.41 16 39 H 0.41 7.42 8.82 -34.47 -0.30 7.11 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.36 6.20 -51.93 -0.32 0.04 16 42 H 0.08 1.95 6.69 -51.93 -0.35 1.60 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.15 2.76 7.62 -52.49 -0.40 2.36 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -31.76 370.25 -9.64 -41.41 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -6.47 Total: 7.60 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: -1.63 Total: -28.20 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.63 Total: -45.94 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -2.12 Total: -47.33 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 51.88 SS G_CDS: -0.61 Total: 51.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.76 -9.64 -41.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594752093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.197 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds