Wall clock time and date at job start Tue Mar 31 2020 15:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47217 * 2 1 4 4 H 1.08994 * 109.47324 * 304.99831 * 3 2 1 5 5 C 1.53007 * 109.46934 * 184.99775 * 3 2 1 6 6 O 1.42902 * 109.47197 * 65.00179 * 3 2 1 7 7 C 1.35902 * 117.00019 * 204.85938 * 6 3 2 8 8 C 1.38749 * 120.05545 * 354.56079 * 7 6 3 9 9 C 1.38115 * 119.94165 * 179.97438 * 8 7 6 10 10 C 1.38285 * 120.06077 * 0.02562 * 9 8 7 11 11 C 1.38245 * 120.11079 * 359.97438 * 10 9 8 12 12 S 1.76193 * 119.97556 * 180.02562 * 11 10 9 13 13 O 1.42099 * 106.40661 * 203.54325 * 12 11 10 14 14 O 1.42104 * 106.40032 * 336.46374 * 12 11 10 15 15 N 1.65601 * 107.21675 * 90.00259 * 12 11 10 16 16 C 1.46497 * 119.99878 * 65.00523 * 15 12 11 17 17 H 1.09003 * 109.47315 * 24.99443 * 16 15 12 18 18 C 1.53003 * 109.46822 * 264.99863 * 16 15 12 19 19 C 1.50695 * 109.47349 * 144.99916 * 16 15 12 20 20 H 1.08005 * 120.00013 * 5.26261 * 19 16 15 21 21 C 1.37879 * 119.99919 * 185.26100 * 19 16 15 22 22 N 1.31506 * 120.00402 * 6.64715 * 21 19 16 23 23 Si 1.86810 * 119.99928 * 186.64449 * 21 19 16 24 24 H 1.48499 * 109.46909 * 84.98882 * 23 21 19 25 25 H 1.48498 * 109.47064 * 204.99245 * 23 21 19 26 26 H 1.48502 * 109.47114 * 324.99086 * 23 21 19 27 27 C 1.38172 * 120.05478 * 359.97438 * 11 10 9 28 28 H 1.08992 * 109.47611 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46676 * 300.00220 * 1 2 3 30 30 H 1.09001 * 109.46730 * 59.99564 * 1 2 3 31 31 H 1.09003 * 109.47176 * 239.99953 * 2 1 3 32 32 H 1.09003 * 109.47197 * 120.00202 * 2 1 3 33 33 H 1.08993 * 109.46666 * 60.00408 * 5 3 2 34 34 H 1.08999 * 109.46867 * 180.02562 * 5 3 2 35 35 H 1.08994 * 109.47161 * 300.00156 * 5 3 2 36 36 H 1.08002 * 120.02776 * 0.26022 * 8 7 6 37 37 H 1.08006 * 119.96993 * 180.02562 * 9 8 7 38 38 H 1.07998 * 119.94591 * 180.02562 * 10 9 8 39 39 H 0.96998 * 120.00370 * 244.99769 * 15 12 11 40 40 H 1.08998 * 109.46943 * 303.72093 * 18 16 15 41 41 H 1.08997 * 109.47497 * 63.72360 * 18 16 15 42 42 H 1.09000 * 109.47186 * 183.72306 * 18 16 15 43 43 H 0.96997 * 120.00266 * 179.97438 * 22 21 19 44 44 H 1.07995 * 120.02831 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 8 1.6620 2.0814 1.2211 7 6 1.5551 3.4361 1.2012 8 6 1.9170 4.1451 0.0649 9 6 1.8069 5.5218 0.0471 10 6 1.3369 6.1935 1.1607 11 6 0.9756 5.4894 2.2942 12 16 0.3765 6.3488 3.7108 13 8 0.6169 5.5013 4.8258 14 8 0.8808 7.6742 3.6190 15 7 -1.2683 6.4625 3.5559 16 6 -2.0913 5.2507 3.5758 17 1 -1.5677 4.4647 4.1199 18 6 -2.3545 4.7894 2.1409 19 6 -3.4028 5.5453 4.2572 20 1 -3.6386 6.5545 4.5614 21 6 -4.3016 4.5266 4.4922 22 7 -3.9635 3.2805 4.2424 23 14 -6.0000 4.9163 5.1658 24 1 -6.9083 5.2676 4.0448 25 1 -6.5329 3.7294 5.8816 26 1 -5.9085 6.0618 6.1063 27 6 1.0829 4.1120 2.3167 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8532 0.9570 -1.0570 34 1 3.9283 2.4719 -0.1252 35 1 3.9995 0.9052 0.7161 36 1 2.2802 3.6206 -0.8066 37 1 2.0881 6.0741 -0.8374 38 1 1.2511 7.2700 1.1446 39 1 -1.6868 7.3313 3.4521 40 1 -2.8186 5.5993 1.5782 41 1 -1.4114 4.5132 1.6693 42 1 -3.0209 3.9269 2.1529 43 1 -4.5957 2.5638 4.4081 44 1 0.8009 3.5624 3.2025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594752093.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:02 Heat of formation + Delta-G solvation = -122.227810 kcal Electronic energy + Delta-G solvation = -26717.409927 eV Core-core repulsion = 22953.886206 eV Total energy + Delta-G solvation = -3763.523721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.39865 -38.88076 -38.33406 -37.25284 -36.93382 -35.15609 -34.12904 -32.44331 -31.07990 -30.71391 -30.20829 -27.21544 -25.11376 -24.55098 -23.57148 -22.86378 -21.95489 -20.50384 -19.64204 -19.11839 -17.90880 -17.53055 -17.33658 -17.15283 -16.88163 -16.34700 -16.17199 -15.40177 -15.24536 -14.85541 -14.77054 -14.51937 -14.43711 -14.26396 -14.07196 -13.60097 -13.52931 -13.29298 -13.23434 -13.15287 -13.07091 -12.79291 -12.75817 -12.70270 -12.56925 -12.44646 -12.31001 -12.02753 -11.98552 -11.82705 -11.65111 -11.47878 -11.16733 -10.57189 -10.41742 -10.10707 -9.32778 -8.16096 -6.27884 -0.58036 -0.24283 0.31192 1.45719 1.46399 1.56052 2.09892 2.15666 2.43978 2.49463 2.81568 3.15590 3.43452 3.65078 3.76214 3.84965 3.95023 4.07956 4.09048 4.20073 4.39459 4.41256 4.53703 4.58686 4.65230 4.71564 4.81531 4.84283 4.93273 4.99642 5.02154 5.03847 5.08798 5.15048 5.16307 5.20007 5.25350 5.39902 5.57950 5.60720 5.70648 5.92393 6.12358 6.41262 6.42345 6.82561 7.40720 8.91930 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011204 B = 0.004591 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.529810 B = 6097.524722 C = 7932.541126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C 0.067 3.933 4 H 0.086 0.914 5 C -0.177 4.177 6 O -0.326 6.326 7 C 0.107 3.893 8 C -0.151 4.151 9 C -0.091 4.091 10 C -0.068 4.068 11 C -0.634 4.634 12 S 2.701 3.299 13 O -1.000 7.000 14 O -0.984 6.984 15 N -1.097 6.097 16 C 0.273 3.727 17 H 0.021 0.979 18 C -0.140 4.140 19 C -0.543 4.543 20 H 0.068 0.932 21 C 0.018 3.982 22 N -0.916 5.916 23 Si 0.962 3.038 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.269 1.269 27 C -0.077 4.077 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.156 0.844 39 H 0.419 0.581 40 H 0.048 0.952 41 H 0.034 0.966 42 H 0.053 0.947 43 H 0.265 0.735 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.779 -2.423 -15.772 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C 0.012 3.988 4 H 0.104 0.896 5 C -0.234 4.234 6 O -0.241 6.241 7 C 0.061 3.939 8 C -0.170 4.170 9 C -0.110 4.110 10 C -0.087 4.087 11 C -0.723 4.723 12 S 2.793 3.207 13 O -0.990 6.990 14 O -0.974 6.974 15 N -0.858 5.858 16 C 0.167 3.833 17 H 0.039 0.961 18 C -0.199 4.199 19 C -0.583 4.583 20 H 0.086 0.914 21 C -0.183 4.183 22 N -0.554 5.554 23 Si 0.787 3.213 24 H -0.194 1.194 25 H -0.212 1.212 26 H -0.194 1.194 27 C -0.097 4.097 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.186 0.814 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.254 0.746 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.272 -2.614 -14.875 20.106 hybrid contribution -1.256 -0.147 0.133 1.272 sum 12.016 -2.761 -14.742 19.218 Atomic orbital electron populations 1.21783 0.96111 1.02261 1.01381 1.21680 0.95891 0.93365 1.04255 1.22922 0.96404 0.94517 0.84997 0.89581 1.22384 0.93521 1.03301 1.04171 1.86174 1.84021 1.16036 1.37850 1.19043 0.96751 0.83495 0.94632 1.21933 1.01522 0.95815 0.97723 1.21519 0.96983 0.93598 0.98850 1.21136 0.95407 1.01070 0.91122 1.30566 1.16830 1.04643 1.20273 1.01231 0.72685 0.72624 0.74167 1.93525 1.85208 1.69776 1.50499 1.93503 1.79508 1.36673 1.87729 1.55284 1.23535 1.16265 1.90704 1.18320 0.90206 0.81108 0.93647 0.96135 1.22031 0.99685 1.01016 0.97182 1.21575 1.01799 0.95370 1.39511 0.91373 1.25711 1.02358 0.94619 0.95582 1.70055 1.36593 0.99670 1.49094 0.85514 0.79556 0.77641 0.78582 1.19431 1.21175 1.19402 1.20084 0.98929 0.92362 0.98371 0.91396 0.94977 0.92168 0.86896 0.91474 0.88121 0.91938 0.92123 0.81350 0.80571 0.82660 0.74571 0.93259 0.94658 0.92819 0.92557 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 9.81 71.98 0.71 -2.60 16 2 C -0.11 -1.93 5.64 30.59 0.17 -1.75 16 3 C 0.07 1.24 2.23 30.60 0.07 1.31 16 4 H 0.09 1.35 6.31 -2.39 -0.02 1.33 16 5 C -0.18 -2.45 9.17 71.98 0.66 -1.79 16 6 O -0.33 -9.37 9.34 -92.45 -0.86 -10.24 16 7 C 0.11 3.21 6.60 22.51 0.15 3.35 16 8 C -0.15 -3.31 8.24 22.36 0.18 -3.12 16 9 C -0.09 -1.88 10.04 22.25 0.22 -1.65 16 10 C -0.07 -1.83 9.52 22.28 0.21 -1.62 16 11 C -0.63 -21.96 5.16 22.26 0.11 -21.85 16 12 S 2.70 108.02 5.72 -56.49 -0.32 107.70 16 13 O -1.00 -48.16 16.62 -128.00 -2.13 -50.29 16 14 O -0.98 -38.93 17.28 -128.00 -2.21 -41.15 16 15 N -1.10 -45.60 5.46 -172.53 -0.94 -46.54 16 16 C 0.27 13.57 2.76 44.25 0.12 13.69 16 17 H 0.02 1.18 7.47 -2.39 -0.02 1.16 16 18 C -0.14 -6.37 9.39 71.98 0.68 -5.70 16 19 C -0.54 -29.19 8.69 25.60 0.22 -28.96 16 20 H 0.07 3.52 7.82 -2.91 -0.02 3.49 16 21 C 0.02 0.96 5.22 84.66 0.44 1.41 16 22 N -0.92 -52.24 12.01 21.45 0.26 -51.98 16 23 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.08 -2.82 8.44 22.37 0.19 -2.63 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.03 0.89 7.82 -2.39 -0.02 0.87 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.88 6.91 -2.39 -0.02 0.86 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.17 2.39 5.43 -2.91 -0.02 2.38 16 37 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 38 H 0.16 3.62 7.61 -2.91 -0.02 3.60 16 39 H 0.42 15.36 8.82 -96.74 -0.85 14.50 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.03 1.44 6.20 -2.39 -0.01 1.43 16 42 H 0.05 2.72 6.69 -2.39 -0.02 2.70 16 43 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.12 4.92 7.62 -2.91 -0.02 4.89 16 Total: -1.00 -72.09 370.25 0.11 -71.98 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.16 Total: 27.66 kcal Atomic # 6 Polarization: -56.06 SS G_CDS: 4.14 Total: -51.92 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -0.68 Total: -98.52 kcal Atomic # 8 Polarization: -96.47 SS G_CDS: -5.20 Total: -101.67 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 108.02 SS G_CDS: -0.32 Total: 107.70 kcal Total: -72.09 0.11 -71.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594752093.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.252 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds