Wall clock time and date at job start Tue Mar 31 2020 15:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47119 * 2 1 4 4 H 1.08995 * 109.46957 * 55.00180 * 3 2 1 5 5 C 1.52998 * 109.46686 * 175.00459 * 3 2 1 6 6 O 1.42904 * 109.47247 * 295.00128 * 3 2 1 7 7 C 1.35899 * 116.99922 * 155.10339 * 6 3 2 8 8 C 1.38753 * 120.05414 * 5.45900 * 7 6 3 9 9 C 1.38122 * 119.94242 * 180.02562 * 8 7 6 10 10 C 1.38288 * 120.05729 * 0.27538 * 9 8 7 11 11 C 1.38247 * 120.10924 * 359.44959 * 10 9 8 12 12 S 1.76196 * 119.97518 * 180.29694 * 11 10 9 13 13 O 1.42098 * 106.39915 * 23.79173 * 12 11 10 14 14 O 1.42092 * 106.40666 * 156.71238 * 12 11 10 15 15 N 1.65601 * 107.21805 * 270.25631 * 12 11 10 16 16 C 1.46497 * 120.00502 * 64.99713 * 15 12 11 17 17 H 1.09006 * 109.46892 * 335.00008 * 16 15 12 18 18 C 1.53004 * 109.47227 * 94.99745 * 16 15 12 19 19 C 1.50694 * 109.47417 * 215.00198 * 16 15 12 20 20 H 1.08004 * 119.99971 * 359.97438 * 19 16 15 21 21 C 1.37883 * 120.00173 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99749 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99748 * 180.02562 * 21 19 16 24 24 H 1.48492 * 109.47096 * 90.00056 * 23 21 19 25 25 H 1.48503 * 109.46756 * 209.99848 * 23 21 19 26 26 H 1.48494 * 109.47332 * 329.99560 * 23 21 19 27 27 C 1.38172 * 120.05482 * 0.55349 * 11 10 9 28 28 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46723 * 300.00193 * 1 2 3 30 30 H 1.09006 * 109.47399 * 59.99383 * 1 2 3 31 31 H 1.09006 * 109.46640 * 240.00356 * 2 1 3 32 32 H 1.08997 * 109.47466 * 120.00341 * 2 1 3 33 33 H 1.08995 * 109.47650 * 60.00146 * 5 3 2 34 34 H 1.09001 * 109.46822 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47069 * 299.99923 * 5 3 2 36 36 H 1.08004 * 120.03221 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.97189 * 179.97438 * 9 8 7 38 38 H 1.07995 * 119.94569 * 179.69724 * 10 9 8 39 39 H 0.97001 * 119.99935 * 244.99499 * 15 12 11 40 40 H 1.09000 * 109.47232 * 300.00305 * 18 16 15 41 41 H 1.09002 * 109.46502 * 60.00389 * 18 16 15 42 42 H 1.08999 * 109.46846 * 180.02562 * 18 16 15 43 43 H 0.96994 * 119.99499 * 180.02562 * 22 21 19 44 44 H 1.07999 * 120.02679 * 179.75007 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1256 6 8 1.6620 2.0815 -1.2211 7 6 1.5542 3.4360 -1.2009 8 6 1.9159 4.1451 -0.0644 9 6 1.8050 5.5217 -0.0463 10 6 1.3286 6.1929 -1.1576 11 6 0.9729 5.4892 -2.2932 12 16 0.3737 6.3486 -3.7098 13 8 0.8773 7.6742 -3.6176 14 8 0.6149 5.5015 -4.8249 15 7 -1.2712 6.4615 -3.5553 16 6 -1.8523 7.2484 -2.4648 17 1 -1.1416 7.3069 -1.6403 18 6 -2.1689 8.6589 -2.9662 19 6 -3.1204 6.5879 -1.9890 20 1 -3.4599 5.6735 -2.4528 21 6 -3.8474 7.1508 -0.9615 22 7 -3.4337 8.2640 -0.3963 23 14 -5.4190 6.3315 -0.3713 24 1 -5.0986 5.3702 0.7142 25 1 -6.3531 7.3652 0.1427 26 1 -6.0547 5.6081 -1.5016 27 6 1.0820 4.1120 -2.3163 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9994 0.9053 -0.7162 34 1 3.9282 2.4719 0.1261 35 1 3.8532 0.9569 1.0570 36 1 2.2838 3.6211 0.8053 37 1 2.0860 6.0741 0.8382 38 1 1.2380 7.2689 -1.1397 39 1 -1.8500 6.0065 -4.1869 40 1 -1.2516 9.1366 -3.3103 41 1 -2.8795 8.6003 -3.7906 42 1 -2.6009 9.2444 -2.1546 43 1 -3.9450 8.6597 0.3267 44 1 0.8002 3.5624 -3.2023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594752094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:06 Heat of formation + Delta-G solvation = -100.899197 kcal Electronic energy + Delta-G solvation = -26500.358898 eV Core-core repulsion = 22737.760055 eV Total energy + Delta-G solvation = -3762.598843 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.34325 -37.78850 -36.70319 -35.42450 -35.28485 -34.34041 -32.20040 -31.28357 -30.19343 -29.68701 -28.26694 -25.21876 -24.29604 -23.49028 -22.47338 -21.02678 -20.93559 -19.17466 -18.30180 -17.33717 -16.44107 -16.19802 -15.96478 -15.86491 -15.42078 -15.17728 -14.63541 -14.33786 -13.95703 -13.75375 -13.60729 -13.48739 -13.35480 -12.66260 -12.60826 -12.27182 -12.17811 -11.96603 -11.83663 -11.68790 -11.60643 -11.54427 -11.37234 -11.28419 -11.16523 -11.00084 -10.89382 -10.80137 -10.57797 -10.42334 -10.27287 -10.11520 -9.25756 -9.16465 -8.63138 -8.30698 -8.16921 -6.14733 -4.22436 0.85579 1.13197 1.50508 3.08222 3.22899 3.30169 3.32979 3.52164 3.83795 4.32550 4.33895 4.39729 4.61169 4.71901 4.81397 4.87033 4.97245 5.05831 5.17238 5.21594 5.30367 5.31653 5.36395 5.50074 5.60873 5.62136 5.71918 5.82554 5.87507 5.98449 6.11631 6.22563 6.31895 6.33115 6.39158 6.69534 6.83179 7.05521 7.09535 7.41394 7.57806 7.70189 7.81894 8.03081 8.26902 8.80760 9.43829 10.90942 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.004587 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.401646 B = 6103.243364 C = 7637.931628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.078 3.922 4 H 0.074 0.926 5 C -0.181 4.181 6 O -0.306 6.306 7 C 0.106 3.894 8 C -0.162 4.162 9 C -0.101 4.101 10 C -0.048 4.048 11 C -0.627 4.627 12 S 2.690 3.310 13 O -0.960 6.960 14 O -0.980 6.980 15 N -1.098 6.098 16 C 0.273 3.727 17 H 0.042 0.958 18 C -0.158 4.158 19 C -0.525 4.525 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.051 4.051 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.410 0.590 40 H 0.026 0.974 41 H 0.032 0.968 42 H 0.092 0.908 43 H 0.264 0.736 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.844 -11.824 3.369 16.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.092 0.908 5 C -0.239 4.239 6 O -0.221 6.221 7 C 0.061 3.939 8 C -0.181 4.181 9 C -0.120 4.120 10 C -0.067 4.067 11 C -0.712 4.712 12 S 2.778 3.222 13 O -0.950 6.950 14 O -0.970 6.970 15 N -0.859 5.859 16 C 0.169 3.831 17 H 0.060 0.940 18 C -0.218 4.218 19 C -0.564 4.564 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.524 5.524 23 Si 0.726 3.274 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.071 4.071 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.161 0.839 39 H 0.244 0.756 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.400 -11.418 2.834 16.382 hybrid contribution -1.132 -0.943 1.237 1.924 sum 10.267 -12.361 4.071 16.577 Atomic orbital electron populations 1.21782 0.94880 1.01890 1.02824 1.21620 0.97069 0.93725 1.03036 1.22525 0.94911 0.94155 0.86254 0.90823 1.22395 0.95349 1.03178 1.02937 1.86122 1.84153 1.16423 1.35354 1.18923 0.97665 0.82625 0.94710 1.21496 1.03296 0.95499 0.97770 1.21056 0.98840 0.93557 0.98535 1.20910 0.94027 1.00635 0.91178 1.31090 1.14772 1.04770 1.20530 1.01918 0.73470 0.73782 0.73067 1.93568 1.79594 1.35377 1.86477 1.93523 1.85257 1.68946 1.49301 1.55554 1.23208 1.64940 1.42242 1.18557 0.94349 0.87737 0.82413 0.94017 1.22242 0.98949 0.99088 1.01530 1.21296 1.07536 1.09527 1.18058 0.91772 1.24902 0.97858 0.94872 0.96140 1.69876 1.39288 1.18696 1.24589 0.86494 0.82835 0.79056 0.79013 1.20708 1.21090 1.19785 1.20062 0.97560 0.91865 0.97566 0.92453 0.92712 0.91627 0.90759 0.90194 0.91320 0.91773 0.91055 0.85050 0.84993 0.83905 0.75591 0.95504 0.94850 0.88978 0.92599 0.83798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.81 37.16 0.36 -1.13 16 2 C -0.12 -1.00 5.64 -26.73 -0.15 -1.15 16 3 C 0.08 0.78 2.22 -26.73 -0.06 0.72 16 4 H 0.07 0.72 6.32 -51.93 -0.33 0.39 16 5 C -0.18 -1.51 9.17 37.16 0.34 -1.17 16 6 O -0.31 -4.17 9.34 -19.42 -0.18 -4.35 16 7 C 0.11 1.62 6.60 -39.22 -0.26 1.36 16 8 C -0.16 -2.20 8.24 -39.43 -0.32 -2.53 16 9 C -0.10 -1.46 10.04 -39.61 -0.40 -1.86 16 10 C -0.05 -0.82 8.88 -39.56 -0.35 -1.17 16 11 C -0.63 -11.24 5.82 -39.60 -0.23 -11.47 16 12 S 2.69 51.70 5.65 -107.50 -0.61 51.10 16 13 O -0.96 -20.43 16.55 -57.18 -0.95 -21.38 16 14 O -0.98 -19.67 17.28 -57.18 -0.99 -20.65 16 15 N -1.10 -22.22 5.46 -5.88 -0.03 -22.25 16 16 C 0.27 6.50 2.76 -69.08 -0.19 6.30 16 17 H 0.04 1.03 7.21 -51.93 -0.37 0.66 16 18 C -0.16 -3.77 9.29 37.16 0.35 -3.43 16 19 C -0.52 -13.44 8.76 -34.44 -0.30 -13.75 16 20 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 21 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 22 N -0.89 -23.82 11.32 55.43 0.63 -23.19 16 23 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.05 -0.86 9.46 -39.43 -0.37 -1.23 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.57 6.90 -51.93 -0.36 0.21 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.13 1.39 5.43 -52.48 -0.28 1.11 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.14 2.39 7.62 -52.49 -0.40 1.99 16 39 H 0.41 7.54 8.83 -34.47 -0.30 7.23 16 40 H 0.03 0.60 7.64 -51.93 -0.40 0.20 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 43 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.14 2.31 7.62 -52.49 -0.40 1.91 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -30.91 371.08 -9.73 -40.64 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.50 Total: 8.08 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: -1.68 Total: -28.88 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.60 Total: -45.44 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -2.12 Total: -46.38 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 51.70 SS G_CDS: -0.61 Total: 51.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.91 -9.73 -40.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594752094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.256 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds