Wall clock time and date at job start Tue Mar 31 2020 15:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47119 * 2 1 4 4 H 1.08995 * 109.46957 * 55.00180 * 3 2 1 5 5 C 1.52998 * 109.46686 * 175.00459 * 3 2 1 6 6 O 1.42904 * 109.47247 * 295.00128 * 3 2 1 7 7 C 1.35899 * 116.99922 * 155.10339 * 6 3 2 8 8 C 1.38753 * 120.05414 * 5.45900 * 7 6 3 9 9 C 1.38122 * 119.94242 * 180.02562 * 8 7 6 10 10 C 1.38288 * 120.05729 * 0.27538 * 9 8 7 11 11 C 1.38247 * 120.10924 * 359.44959 * 10 9 8 12 12 S 1.76196 * 119.97518 * 180.29694 * 11 10 9 13 13 O 1.42098 * 106.39915 * 23.79173 * 12 11 10 14 14 O 1.42092 * 106.40666 * 156.71238 * 12 11 10 15 15 N 1.65601 * 107.21805 * 270.25631 * 12 11 10 16 16 C 1.46497 * 120.00502 * 64.99713 * 15 12 11 17 17 H 1.09006 * 109.46892 * 335.00008 * 16 15 12 18 18 C 1.53004 * 109.47227 * 94.99745 * 16 15 12 19 19 C 1.50694 * 109.47417 * 215.00198 * 16 15 12 20 20 H 1.08004 * 119.99971 * 359.97438 * 19 16 15 21 21 C 1.37883 * 120.00173 * 179.97438 * 19 16 15 22 22 N 1.31516 * 119.99749 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99748 * 180.02562 * 21 19 16 24 24 H 1.48492 * 109.47096 * 90.00056 * 23 21 19 25 25 H 1.48503 * 109.46756 * 209.99848 * 23 21 19 26 26 H 1.48494 * 109.47332 * 329.99560 * 23 21 19 27 27 C 1.38172 * 120.05482 * 0.55349 * 11 10 9 28 28 H 1.08995 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46723 * 300.00193 * 1 2 3 30 30 H 1.09006 * 109.47399 * 59.99383 * 1 2 3 31 31 H 1.09006 * 109.46640 * 240.00356 * 2 1 3 32 32 H 1.08997 * 109.47466 * 120.00341 * 2 1 3 33 33 H 1.08995 * 109.47650 * 60.00146 * 5 3 2 34 34 H 1.09001 * 109.46822 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47069 * 299.99923 * 5 3 2 36 36 H 1.08004 * 120.03221 * 0.02562 * 8 7 6 37 37 H 1.07997 * 119.97189 * 179.97438 * 9 8 7 38 38 H 1.07995 * 119.94569 * 179.69724 * 10 9 8 39 39 H 0.97001 * 119.99935 * 244.99499 * 15 12 11 40 40 H 1.09000 * 109.47232 * 300.00305 * 18 16 15 41 41 H 1.09002 * 109.46502 * 60.00389 * 18 16 15 42 42 H 1.08999 * 109.46846 * 180.02562 * 18 16 15 43 43 H 0.96994 * 119.99499 * 180.02562 * 22 21 19 44 44 H 1.07999 * 120.02679 * 179.75007 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4442 0.1256 6 8 1.6620 2.0815 -1.2211 7 6 1.5542 3.4360 -1.2009 8 6 1.9159 4.1451 -0.0644 9 6 1.8050 5.5217 -0.0463 10 6 1.3286 6.1929 -1.1576 11 6 0.9729 5.4892 -2.2932 12 16 0.3737 6.3486 -3.7098 13 8 0.8773 7.6742 -3.6176 14 8 0.6149 5.5015 -4.8249 15 7 -1.2712 6.4615 -3.5553 16 6 -1.8523 7.2484 -2.4648 17 1 -1.1416 7.3069 -1.6403 18 6 -2.1689 8.6589 -2.9662 19 6 -3.1204 6.5879 -1.9890 20 1 -3.4599 5.6735 -2.4528 21 6 -3.8474 7.1508 -0.9615 22 7 -3.4337 8.2640 -0.3963 23 14 -5.4190 6.3315 -0.3713 24 1 -5.0986 5.3702 0.7142 25 1 -6.3531 7.3652 0.1427 26 1 -6.0547 5.6081 -1.5016 27 6 1.0820 4.1120 -2.3163 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9994 0.9053 -0.7162 34 1 3.9282 2.4719 0.1261 35 1 3.8532 0.9569 1.0570 36 1 2.2838 3.6211 0.8053 37 1 2.0860 6.0741 0.8382 38 1 1.2380 7.2689 -1.1397 39 1 -1.8500 6.0065 -4.1869 40 1 -1.2516 9.1366 -3.3103 41 1 -2.8795 8.6003 -3.7906 42 1 -2.6009 9.2444 -2.1546 43 1 -3.9450 8.6597 0.3267 44 1 0.8002 3.5624 -3.2023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594752094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:05 Heat of formation + Delta-G solvation = -120.814413 kcal Electronic energy + Delta-G solvation = -26501.222486 eV Core-core repulsion = 22737.760055 eV Total energy + Delta-G solvation = -3763.462431 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40235 -38.88024 -38.32832 -37.24052 -36.92194 -35.16380 -34.11121 -32.44995 -31.08716 -30.71472 -30.11983 -27.21334 -25.13237 -24.57211 -23.60850 -22.80764 -21.96142 -20.48269 -19.68024 -19.02990 -17.92270 -17.57377 -17.31957 -17.14346 -16.89861 -16.40156 -16.17071 -15.43032 -15.18465 -14.87439 -14.80423 -14.51150 -14.42428 -14.27949 -14.03501 -13.55985 -13.52536 -13.28807 -13.22473 -13.15295 -12.99668 -12.82658 -12.80341 -12.71137 -12.57576 -12.37713 -12.20692 -12.03108 -12.00957 -11.85891 -11.66592 -11.50575 -11.08569 -10.58162 -10.43616 -10.10145 -9.34437 -8.12284 -6.26042 -0.56952 -0.24136 0.28983 1.44655 1.47044 1.56090 2.05999 2.13630 2.42759 2.50164 2.81695 3.17496 3.42429 3.63549 3.74887 3.82582 3.94389 4.05320 4.07680 4.18047 4.38912 4.40040 4.52607 4.57988 4.65566 4.71096 4.81068 4.90919 4.93130 5.00000 5.04472 5.12589 5.13206 5.14629 5.18051 5.18807 5.24536 5.38735 5.56188 5.60809 5.76390 6.03875 6.10356 6.37599 6.41831 6.83836 7.43155 8.93030 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010487 B = 0.004587 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.401646 B = 6103.243364 C = 7637.931628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C 0.066 3.934 4 H 0.080 0.920 5 C -0.178 4.178 6 O -0.318 6.318 7 C 0.107 3.893 8 C -0.152 4.152 9 C -0.097 4.097 10 C -0.073 4.073 11 C -0.638 4.638 12 S 2.706 3.294 13 O -0.985 6.985 14 O -0.990 6.990 15 N -1.099 6.099 16 C 0.277 3.723 17 H 0.029 0.971 18 C -0.153 4.153 19 C -0.539 4.539 20 H 0.065 0.935 21 C 0.022 3.978 22 N -0.911 5.911 23 Si 0.957 3.043 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.074 4.074 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.417 0.583 40 H 0.030 0.970 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.265 0.735 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.406 -13.758 5.215 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C 0.010 3.990 4 H 0.098 0.902 5 C -0.235 4.235 6 O -0.233 6.233 7 C 0.061 3.939 8 C -0.170 4.170 9 C -0.116 4.116 10 C -0.092 4.092 11 C -0.726 4.726 12 S 2.797 3.203 13 O -0.975 6.975 14 O -0.981 6.981 15 N -0.859 5.859 16 C 0.172 3.828 17 H 0.047 0.953 18 C -0.213 4.213 19 C -0.578 4.578 20 H 0.084 0.916 21 C -0.179 4.179 22 N -0.550 5.550 23 Si 0.783 3.217 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.193 1.193 27 C -0.094 4.094 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.116 0.884 36 H 0.185 0.815 37 H 0.183 0.817 38 H 0.154 0.846 39 H 0.252 0.748 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.951 -13.352 4.636 18.510 hybrid contribution -1.228 -0.447 0.713 1.489 sum 10.723 -13.800 5.349 18.276 Atomic orbital electron populations 1.21797 0.95938 1.02381 1.01477 1.21669 0.96075 0.92939 1.04394 1.22919 0.96354 0.94700 0.85005 0.90177 1.22387 0.93662 1.03185 1.04255 1.86130 1.84046 1.15511 1.37607 1.19000 0.96800 0.83578 0.94508 1.21893 1.01663 0.95246 0.98243 1.21448 0.97383 0.94179 0.98575 1.21069 0.95431 1.00653 0.92088 1.30675 1.16493 1.05232 1.20161 1.01196 0.72751 0.73178 0.73198 1.93527 1.79789 1.37084 1.87071 1.93500 1.85184 1.68997 1.50404 1.55377 1.23849 1.64976 1.41744 1.18323 0.93715 0.87908 0.82888 0.95278 1.22155 0.99080 0.99113 1.00920 1.21579 1.08242 1.09702 1.18297 0.91636 1.25611 1.00577 0.95379 0.96316 1.69985 1.40368 1.19685 1.24952 0.85568 0.79450 0.78140 0.78533 1.20360 1.20888 1.19317 1.20156 0.98942 0.91654 0.98674 0.91126 0.92759 0.94215 0.90869 0.87286 0.91639 0.92279 0.88367 0.81481 0.81722 0.84553 0.74776 0.95091 0.94372 0.90834 0.92524 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.81 71.98 0.71 -2.06 16 2 C -0.11 -1.62 5.64 30.60 0.17 -1.45 16 3 C 0.07 1.14 2.22 30.59 0.07 1.21 16 4 H 0.08 1.29 6.32 -2.39 -0.02 1.28 16 5 C -0.18 -2.37 9.17 71.98 0.66 -1.71 16 6 O -0.32 -8.24 9.34 -92.42 -0.86 -9.10 16 7 C 0.11 3.14 6.60 22.51 0.15 3.29 16 8 C -0.15 -3.76 8.24 22.37 0.18 -3.58 16 9 C -0.10 -2.62 10.04 22.25 0.22 -2.40 16 10 C -0.07 -2.48 8.88 22.28 0.20 -2.28 16 11 C -0.64 -23.21 5.82 22.26 0.13 -23.08 16 12 S 2.71 106.64 5.65 -56.49 -0.32 106.32 16 13 O -0.98 -43.04 16.55 -128.00 -2.12 -45.16 16 14 O -0.99 -40.51 17.28 -128.00 -2.21 -42.72 16 15 N -1.10 -45.33 5.46 -172.52 -0.94 -46.27 16 16 C 0.28 13.37 2.76 44.25 0.12 13.49 16 17 H 0.03 1.49 7.21 -2.38 -0.02 1.47 16 18 C -0.15 -7.41 9.29 71.98 0.67 -6.74 16 19 C -0.54 -27.70 8.76 25.60 0.22 -27.48 16 20 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 21 C 0.02 1.13 5.30 84.66 0.45 1.57 16 22 N -0.91 -49.22 11.32 21.45 0.24 -48.98 16 23 Si 0.96 41.27 29.54 68.60 2.03 43.30 16 24 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C -0.07 -2.53 9.46 22.37 0.21 -2.32 16 28 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.04 0.88 7.82 -2.38 -0.02 0.86 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.86 6.90 -2.39 -0.02 0.84 16 35 H 0.10 0.79 8.14 -2.38 -0.02 0.78 16 36 H 0.17 2.87 5.43 -2.91 -0.02 2.85 16 37 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.14 4.70 7.62 -2.91 -0.02 4.68 16 39 H 0.42 15.61 8.83 -96.74 -0.85 14.75 16 40 H 0.03 1.42 7.64 -2.39 -0.02 1.40 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 43 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 44 H 0.14 4.71 7.62 -2.91 -0.02 4.68 16 Total: -1.00 -65.95 371.08 0.14 -65.82 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.15 Total: 30.33 kcal Atomic # 6 Polarization: -57.70 SS G_CDS: 4.17 Total: -53.54 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -0.70 Total: -95.24 kcal Atomic # 8 Polarization: -91.79 SS G_CDS: -5.19 Total: -96.98 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 106.64 SS G_CDS: -0.32 Total: 106.32 kcal Total: -65.95 0.14 -65.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594752094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.999 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds