Wall clock time and date at job start Tue Mar 31 2020 15:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47133 * 2 1 4 4 H 1.09001 * 109.46397 * 304.99214 * 3 2 1 5 5 C 1.53000 * 109.46770 * 184.99957 * 3 2 1 6 6 O 1.42894 * 109.47099 * 64.99551 * 3 2 1 7 7 C 1.35906 * 116.99968 * 204.74114 * 6 3 2 8 8 C 1.38756 * 120.05365 * 354.63763 * 7 6 3 9 9 C 1.38113 * 119.94448 * 179.97438 * 8 7 6 10 10 C 1.38291 * 120.05523 * 0.02562 * 9 8 7 11 11 C 1.38240 * 120.11021 * 359.97438 * 10 9 8 12 12 S 1.76202 * 119.97065 * 180.02562 * 11 10 9 13 13 O 1.42104 * 106.40218 * 203.54212 * 12 11 10 14 14 O 1.42101 * 106.40502 * 336.46046 * 12 11 10 15 15 N 1.65600 * 107.22098 * 90.00104 * 12 11 10 16 16 C 1.46505 * 119.99802 * 64.99596 * 15 12 11 17 17 H 1.09000 * 109.47571 * 335.00471 * 16 15 12 18 18 C 1.52999 * 109.46844 * 95.00208 * 16 15 12 19 19 C 1.50696 * 109.47226 * 215.00063 * 16 15 12 20 20 H 1.08009 * 120.00317 * 0.02562 * 19 16 15 21 21 C 1.37878 * 120.00340 * 179.97438 * 19 16 15 22 22 N 1.31513 * 119.99360 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00215 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47058 * 90.00473 * 23 21 19 25 25 H 1.48500 * 109.47111 * 210.00120 * 23 21 19 26 26 H 1.48500 * 109.47324 * 330.00296 * 23 21 19 27 27 C 1.38162 * 120.05810 * 0.02562 * 11 10 9 28 28 H 1.08997 * 109.47150 * 300.00090 * 1 2 3 29 29 H 1.09004 * 109.46664 * 60.00576 * 1 2 3 30 30 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47709 * 239.99465 * 2 1 3 32 32 H 1.09004 * 109.46664 * 119.99424 * 2 1 3 33 33 H 1.08995 * 109.47500 * 59.99913 * 5 3 2 34 34 H 1.09005 * 109.46666 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47054 * 299.98855 * 5 3 2 36 36 H 1.08006 * 120.02594 * 0.24963 * 8 7 6 37 37 H 1.07999 * 119.97583 * 180.02562 * 9 8 7 38 38 H 1.08003 * 119.94244 * 180.02562 * 10 9 8 39 39 H 0.96997 * 120.00592 * 245.00245 * 15 12 11 40 40 H 1.08999 * 109.47438 * 300.00374 * 18 16 15 41 41 H 1.09002 * 109.46841 * 60.00342 * 18 16 15 42 42 H 1.09000 * 109.47147 * 179.97438 * 18 16 15 43 43 H 0.97001 * 119.99514 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.02766 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0814 1.2209 7 6 1.5573 3.4363 1.2017 8 6 1.9202 4.1452 0.0654 9 6 1.8125 5.5220 0.0481 10 6 1.3440 6.1941 1.1622 11 6 0.9818 5.4902 2.2955 12 16 0.3847 6.3502 3.7127 13 8 0.6240 5.5018 4.8273 14 8 0.8913 7.6747 3.6213 15 7 -1.2600 6.4670 3.5584 16 6 -2.0852 5.2566 3.5779 17 1 -1.4866 4.4034 3.2588 18 6 -2.6020 5.0146 4.9975 19 6 -3.2528 5.4296 2.6410 20 1 -3.3685 6.3490 2.0861 21 6 -4.1731 4.4138 2.4913 22 7 -4.0320 3.2942 3.1666 23 14 -5.6200 4.6280 1.3295 24 1 -5.2425 4.1495 -0.0246 25 1 -6.7760 3.8406 1.8282 26 1 -5.9917 6.0641 1.2612 27 6 1.0877 4.1128 2.3178 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8532 0.9569 -1.0570 34 1 3.9281 2.4720 -0.1262 35 1 3.9994 0.9054 0.7162 36 1 2.2823 3.6204 -0.8063 37 1 2.0944 6.0743 -0.8362 38 1 1.2601 7.2708 1.1465 39 1 -1.6769 7.3366 3.4550 40 1 -1.7575 4.8896 5.6752 41 1 -3.2007 5.8678 5.3166 42 1 -3.2164 4.1144 5.0120 43 1 -4.6796 2.5796 3.0616 44 1 0.8050 3.5633 3.2036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594752095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:10 Heat of formation + Delta-G solvation = -100.468992 kcal Electronic energy + Delta-G solvation = -26753.682740 eV Core-core repulsion = 22991.102552 eV Total energy + Delta-G solvation = -3762.580188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.29305 -37.75522 -36.70332 -35.41584 -35.27899 -34.24294 -32.19062 -31.26069 -30.10827 -29.67060 -28.25663 -25.20512 -24.21189 -23.43191 -22.45247 -20.97123 -20.91391 -19.17747 -18.21826 -17.35143 -16.40835 -16.18329 -15.97648 -15.86008 -15.34547 -15.15342 -14.58951 -14.26181 -13.92766 -13.70670 -13.50420 -13.45525 -13.29657 -12.63747 -12.58659 -12.24423 -12.14889 -11.85196 -11.80779 -11.69998 -11.61675 -11.53589 -11.31731 -11.16288 -11.13954 -10.99353 -10.82445 -10.71381 -10.57179 -10.40547 -10.26210 -10.10723 -9.21981 -9.18086 -8.61569 -8.30589 -8.13752 -6.12998 -4.21013 0.86143 1.13487 1.50626 3.16251 3.23261 3.30575 3.33044 3.52610 3.83554 4.32652 4.34573 4.48674 4.68811 4.78410 4.81227 4.90610 5.01313 5.16558 5.18772 5.21958 5.34813 5.39510 5.43890 5.55589 5.59610 5.70932 5.87213 5.90251 5.97009 6.05008 6.22135 6.32084 6.33742 6.34900 6.36930 6.69702 6.84613 7.07527 7.11215 7.47974 7.59067 7.71395 7.82880 8.04647 8.28101 8.81887 9.45083 10.92569 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009011 B = 0.005507 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.456096 B = 5082.893549 C = 7003.331295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C 0.078 3.922 4 H 0.073 0.927 5 C -0.181 4.181 6 O -0.302 6.302 7 C 0.113 3.887 8 C -0.164 4.164 9 C -0.105 4.105 10 C -0.059 4.059 11 C -0.626 4.626 12 S 2.689 3.311 13 O -0.960 6.960 14 O -0.981 6.981 15 N -1.098 6.098 16 C 0.273 3.727 17 H 0.042 0.958 18 C -0.158 4.158 19 C -0.525 4.525 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.885 5.885 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.042 4.042 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.410 0.590 40 H 0.026 0.974 41 H 0.032 0.968 42 H 0.092 0.908 43 H 0.264 0.736 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 -2.908 -8.327 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.154 4.154 3 C 0.022 3.978 4 H 0.091 0.909 5 C -0.238 4.238 6 O -0.216 6.216 7 C 0.067 3.933 8 C -0.183 4.183 9 C -0.124 4.124 10 C -0.078 4.078 11 C -0.711 4.711 12 S 2.777 3.223 13 O -0.950 6.950 14 O -0.971 6.971 15 N -0.859 5.859 16 C 0.169 3.831 17 H 0.060 0.940 18 C -0.218 4.218 19 C -0.565 4.565 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.523 5.523 23 Si 0.725 3.275 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.062 4.062 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.244 0.756 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.382 -3.127 -7.446 14.783 hybrid contribution -1.022 0.023 -1.773 2.047 sum 11.360 -3.104 -9.220 14.957 Atomic orbital electron populations 1.21787 0.94615 1.01988 1.03068 1.21620 0.97264 0.93575 1.02947 1.22530 0.94769 0.94320 0.86200 0.90928 1.22400 0.95430 1.03056 1.02949 1.86166 1.83894 1.16270 1.35288 1.18960 0.96962 0.82793 0.94588 1.21489 1.03478 0.95480 0.97830 1.20989 0.99452 0.93596 0.98393 1.20768 0.95552 1.00109 0.91412 1.31078 1.14689 1.04895 1.20456 1.01933 0.73235 0.73021 0.74093 1.93572 1.84992 1.68877 1.47560 1.93521 1.79685 1.36472 1.87392 1.55554 1.23247 1.16931 1.90183 1.18560 0.90082 0.80115 0.94299 0.93999 1.22238 1.00039 1.02851 0.96653 1.21281 1.08494 1.01968 1.24734 0.91797 1.24902 0.97897 0.95077 0.95891 1.69880 1.36422 1.05235 1.40719 0.86506 0.81874 0.78273 0.80805 1.20723 1.21088 1.19797 1.20205 0.96154 0.91928 0.97882 0.91205 0.92862 0.92453 0.90313 0.90714 0.91088 0.91879 0.91268 0.85048 0.85214 0.84367 0.75622 0.95500 0.94876 0.88975 0.92596 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.81 37.16 0.36 -1.48 16 2 C -0.12 -1.16 5.64 -26.73 -0.15 -1.32 16 3 C 0.08 0.87 2.23 -26.73 -0.06 0.81 16 4 H 0.07 0.77 6.32 -51.93 -0.33 0.44 16 5 C -0.18 -1.62 9.17 37.16 0.34 -1.28 16 6 O -0.30 -4.58 9.34 -19.44 -0.18 -4.76 16 7 C 0.11 1.83 6.60 -39.22 -0.26 1.57 16 8 C -0.16 -2.24 8.23 -39.44 -0.32 -2.56 16 9 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 10 C -0.06 -0.92 9.52 -39.56 -0.38 -1.30 16 11 C -0.63 -11.26 5.81 -39.61 -0.23 -11.49 16 12 S 2.69 51.78 5.65 -107.50 -0.61 51.17 16 13 O -0.96 -20.78 16.54 -57.17 -0.95 -21.72 16 14 O -0.98 -19.37 17.28 -57.17 -0.99 -20.36 16 15 N -1.10 -22.23 5.46 -5.88 -0.03 -22.26 16 16 C 0.27 6.56 2.76 -69.08 -0.19 6.37 16 17 H 0.04 1.06 7.23 -51.93 -0.38 0.69 16 18 C -0.16 -3.81 9.29 37.16 0.35 -3.46 16 19 C -0.53 -13.51 8.76 -34.44 -0.30 -13.81 16 20 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 21 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.88 -23.99 11.32 55.43 0.63 -23.37 16 23 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.04 -0.77 8.84 -39.44 -0.35 -1.12 16 28 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 6.90 -51.93 -0.36 0.23 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.13 1.40 5.43 -52.48 -0.28 1.11 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.14 1.93 7.61 -52.48 -0.40 1.53 16 39 H 0.41 7.48 8.83 -34.48 -0.30 7.17 16 40 H 0.03 0.61 7.64 -51.93 -0.40 0.21 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 43 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.15 2.79 7.62 -52.48 -0.40 2.40 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -31.15 371.08 -9.73 -40.89 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.50 Total: 8.74 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -1.68 Total: -29.27 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.60 Total: -45.63 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -2.12 Total: -46.85 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 51.78 SS G_CDS: -0.61 Total: 51.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.15 -9.73 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594752095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.582 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds