Wall clock time and date at job start Tue Mar 31 2020 15:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47133 * 2 1 4 4 H 1.09001 * 109.46397 * 304.99214 * 3 2 1 5 5 C 1.53000 * 109.46770 * 184.99957 * 3 2 1 6 6 O 1.42894 * 109.47099 * 64.99551 * 3 2 1 7 7 C 1.35906 * 116.99968 * 204.74114 * 6 3 2 8 8 C 1.38756 * 120.05365 * 354.63763 * 7 6 3 9 9 C 1.38113 * 119.94448 * 179.97438 * 8 7 6 10 10 C 1.38291 * 120.05523 * 0.02562 * 9 8 7 11 11 C 1.38240 * 120.11021 * 359.97438 * 10 9 8 12 12 S 1.76202 * 119.97065 * 180.02562 * 11 10 9 13 13 O 1.42104 * 106.40218 * 203.54212 * 12 11 10 14 14 O 1.42101 * 106.40502 * 336.46046 * 12 11 10 15 15 N 1.65600 * 107.22098 * 90.00104 * 12 11 10 16 16 C 1.46505 * 119.99802 * 64.99596 * 15 12 11 17 17 H 1.09000 * 109.47571 * 335.00471 * 16 15 12 18 18 C 1.52999 * 109.46844 * 95.00208 * 16 15 12 19 19 C 1.50696 * 109.47226 * 215.00063 * 16 15 12 20 20 H 1.08009 * 120.00317 * 0.02562 * 19 16 15 21 21 C 1.37878 * 120.00340 * 179.97438 * 19 16 15 22 22 N 1.31513 * 119.99360 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 120.00215 * 180.02562 * 21 19 16 24 24 H 1.48497 * 109.47058 * 90.00473 * 23 21 19 25 25 H 1.48500 * 109.47111 * 210.00120 * 23 21 19 26 26 H 1.48500 * 109.47324 * 330.00296 * 23 21 19 27 27 C 1.38162 * 120.05810 * 0.02562 * 11 10 9 28 28 H 1.08997 * 109.47150 * 300.00090 * 1 2 3 29 29 H 1.09004 * 109.46664 * 60.00576 * 1 2 3 30 30 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47709 * 239.99465 * 2 1 3 32 32 H 1.09004 * 109.46664 * 119.99424 * 2 1 3 33 33 H 1.08995 * 109.47500 * 59.99913 * 5 3 2 34 34 H 1.09005 * 109.46666 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47054 * 299.98855 * 5 3 2 36 36 H 1.08006 * 120.02594 * 0.24963 * 8 7 6 37 37 H 1.07999 * 119.97583 * 180.02562 * 9 8 7 38 38 H 1.08003 * 119.94244 * 180.02562 * 10 9 8 39 39 H 0.96997 * 120.00592 * 245.00245 * 15 12 11 40 40 H 1.08999 * 109.47438 * 300.00374 * 18 16 15 41 41 H 1.09002 * 109.46841 * 60.00342 * 18 16 15 42 42 H 1.09000 * 109.47147 * 179.97438 * 18 16 15 43 43 H 0.97001 * 119.99514 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.02766 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4443 -0.1257 6 8 1.6619 2.0814 1.2209 7 6 1.5573 3.4363 1.2017 8 6 1.9202 4.1452 0.0654 9 6 1.8125 5.5220 0.0481 10 6 1.3440 6.1941 1.1622 11 6 0.9818 5.4902 2.2955 12 16 0.3847 6.3502 3.7127 13 8 0.6240 5.5018 4.8273 14 8 0.8913 7.6747 3.6213 15 7 -1.2600 6.4670 3.5584 16 6 -2.0852 5.2566 3.5779 17 1 -1.4866 4.4034 3.2588 18 6 -2.6020 5.0146 4.9975 19 6 -3.2528 5.4296 2.6410 20 1 -3.3685 6.3490 2.0861 21 6 -4.1731 4.4138 2.4913 22 7 -4.0320 3.2942 3.1666 23 14 -5.6200 4.6280 1.3295 24 1 -5.2425 4.1495 -0.0246 25 1 -6.7760 3.8406 1.8282 26 1 -5.9917 6.0641 1.2612 27 6 1.0877 4.1128 2.3178 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8532 0.9569 -1.0570 34 1 3.9281 2.4720 -0.1262 35 1 3.9994 0.9054 0.7162 36 1 2.2823 3.6204 -0.8063 37 1 2.0944 6.0743 -0.8362 38 1 1.2601 7.2708 1.1465 39 1 -1.6769 7.3366 3.4550 40 1 -1.7575 4.8896 5.6752 41 1 -3.2007 5.8678 5.3166 42 1 -3.2164 4.1144 5.0120 43 1 -4.6796 2.5796 3.0616 44 1 0.8050 3.5633 3.2036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594752095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:09 Heat of formation + Delta-G solvation = -121.083889 kcal Electronic energy + Delta-G solvation = -26754.576669 eV Core-core repulsion = 22991.102552 eV Total energy + Delta-G solvation = -3763.474117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39566 -38.86767 -38.33550 -37.25244 -36.92416 -35.17014 -34.12174 -32.43792 -31.08955 -30.71967 -30.13940 -27.23010 -25.13110 -24.55920 -23.61470 -22.82623 -21.96965 -20.51505 -19.61528 -19.06510 -17.92507 -17.56327 -17.34405 -17.15081 -16.91940 -16.35632 -16.18638 -15.39531 -15.23820 -14.86252 -14.79014 -14.52321 -14.41875 -14.28731 -14.05096 -13.57192 -13.51842 -13.28257 -13.22735 -13.16340 -13.01319 -12.83322 -12.79554 -12.71828 -12.57256 -12.38686 -12.21893 -12.04937 -12.01112 -11.86875 -11.66401 -11.51061 -11.09602 -10.59953 -10.40603 -10.12234 -9.33186 -8.12621 -6.27314 -0.57030 -0.23315 0.30602 1.44223 1.46108 1.55753 2.08499 2.14454 2.42432 2.49718 2.81814 3.17112 3.42911 3.63922 3.75032 3.83524 3.93670 4.06378 4.07552 4.19039 4.37684 4.40623 4.51390 4.57250 4.63794 4.71182 4.80508 4.89862 4.92216 5.00555 5.01249 5.10558 5.13190 5.14562 5.15852 5.18503 5.24164 5.38007 5.58828 5.60284 5.73779 6.02703 6.09095 6.40549 6.42072 6.83382 7.42174 8.92787 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009011 B = 0.005507 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.456096 B = 5082.893549 C = 7003.331295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C 0.066 3.934 4 H 0.083 0.917 5 C -0.175 4.175 6 O -0.325 6.325 7 C 0.105 3.895 8 C -0.154 4.154 9 C -0.094 4.094 10 C -0.071 4.071 11 C -0.638 4.638 12 S 2.705 3.295 13 O -0.992 6.992 14 O -0.984 6.984 15 N -1.097 6.097 16 C 0.278 3.722 17 H 0.022 0.978 18 C -0.153 4.153 19 C -0.537 4.537 20 H 0.070 0.930 21 C 0.018 3.982 22 N -0.914 5.914 23 Si 0.960 3.040 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.264 1.264 27 C -0.079 4.079 28 H 0.029 0.971 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.169 0.831 37 H 0.176 0.824 38 H 0.155 0.845 39 H 0.419 0.581 40 H 0.027 0.973 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.264 0.736 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.833 -2.463 -11.707 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.150 4.150 3 C 0.010 3.990 4 H 0.101 0.899 5 C -0.233 4.233 6 O -0.240 6.240 7 C 0.059 3.941 8 C -0.172 4.172 9 C -0.112 4.112 10 C -0.090 4.090 11 C -0.726 4.726 12 S 2.796 3.204 13 O -0.982 6.982 14 O -0.974 6.974 15 N -0.858 5.858 16 C 0.173 3.827 17 H 0.039 0.961 18 C -0.212 4.212 19 C -0.577 4.577 20 H 0.088 0.912 21 C -0.182 4.182 22 N -0.552 5.552 23 Si 0.785 3.215 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.189 1.189 27 C -0.099 4.099 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.186 0.814 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.306 -2.647 -10.795 17.338 hybrid contribution -1.227 -0.178 -0.781 1.466 sum 12.079 -2.824 -11.576 16.967 Atomic orbital electron populations 1.21784 0.96326 1.02238 1.01216 1.21674 0.95653 0.93311 1.04386 1.22927 0.96539 0.94537 0.84958 0.89944 1.22377 0.93310 1.03314 1.04256 1.86158 1.84065 1.15957 1.37838 1.19072 0.96783 0.83520 0.94729 1.21930 1.01688 0.95826 0.97761 1.21527 0.97151 0.93668 0.98867 1.21147 0.95478 1.01091 0.91309 1.30667 1.16545 1.04745 1.20680 1.01208 0.72569 0.72589 0.74037 1.93524 1.85201 1.69533 1.49961 1.93504 1.79444 1.36779 1.87698 1.55339 1.23609 1.16315 1.90540 1.18273 0.89891 0.80797 0.93751 0.96057 1.22149 0.99820 1.02160 0.97118 1.21585 1.08908 1.02212 1.24946 0.91158 1.25683 1.00406 0.94799 0.97337 1.70014 1.37296 1.05932 1.41998 0.85527 0.78668 0.78506 0.78759 1.20348 1.21055 1.18863 1.20139 0.98867 0.92430 0.98501 0.95139 0.92526 0.91225 0.86809 0.91204 0.88087 0.91979 0.91910 0.81393 0.80615 0.82701 0.74595 0.95376 0.94080 0.91035 0.92635 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.81 71.98 0.71 -2.96 16 2 C -0.11 -2.06 5.64 30.60 0.17 -1.89 16 3 C 0.07 1.34 2.23 30.60 0.07 1.41 16 4 H 0.08 1.50 6.32 -2.39 -0.02 1.48 16 5 C -0.18 -2.63 9.17 71.98 0.66 -1.97 16 6 O -0.33 -9.97 9.34 -92.49 -0.86 -10.84 16 7 C 0.11 3.40 6.60 22.51 0.15 3.55 16 8 C -0.15 -3.77 8.23 22.36 0.18 -3.58 16 9 C -0.09 -2.19 10.04 22.25 0.22 -1.97 16 10 C -0.07 -2.10 9.52 22.28 0.21 -1.89 16 11 C -0.64 -23.31 5.81 22.25 0.13 -23.18 16 12 S 2.70 107.09 5.65 -56.49 -0.32 106.77 16 13 O -0.99 -45.24 16.54 -128.00 -2.12 -47.35 16 14 O -0.98 -38.78 17.28 -128.00 -2.21 -40.99 16 15 N -1.10 -45.37 5.46 -172.52 -0.94 -46.31 16 16 C 0.28 13.78 2.76 44.24 0.12 13.90 16 17 H 0.02 1.16 7.23 -2.39 -0.02 1.14 16 18 C -0.15 -7.63 9.29 71.98 0.67 -6.96 16 19 C -0.54 -27.86 8.76 25.60 0.22 -27.63 16 20 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 21 C 0.02 0.95 5.30 84.66 0.45 1.40 16 22 N -0.91 -50.85 11.32 21.45 0.24 -50.61 16 23 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 27 C -0.08 -3.04 8.84 22.36 0.20 -2.85 16 28 H 0.03 0.92 7.82 -2.39 -0.02 0.90 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.33 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.06 0.95 6.90 -2.38 -0.02 0.93 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.17 2.82 5.43 -2.91 -0.02 2.80 16 37 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.16 3.98 7.61 -2.91 -0.02 3.95 16 39 H 0.42 15.36 8.83 -96.75 -0.85 14.50 16 40 H 0.03 1.34 7.64 -2.39 -0.02 1.32 16 41 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 43 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.12 5.15 7.62 -2.91 -0.02 5.13 16 Total: -1.00 -69.20 371.08 0.14 -69.06 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.15 Total: 31.26 kcal Atomic # 6 Polarization: -58.79 SS G_CDS: 4.17 Total: -54.62 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -0.70 Total: -96.92 kcal Atomic # 8 Polarization: -93.99 SS G_CDS: -5.19 Total: -99.18 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 107.09 SS G_CDS: -0.32 Total: 106.77 kcal Total: -69.20 0.14 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594752095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.021 kcal (2) G-P(sol) polarization free energy of solvation -69.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds