Wall clock time and date at job start Tue Mar 31 2020 15:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 H 1.08998 * 109.47341 * 55.00437 * 3 2 1 5 5 C 1.52999 * 109.47066 * 174.99978 * 3 2 1 6 6 O 1.42900 * 109.47342 * 294.99672 * 3 2 1 7 7 C 1.35902 * 116.99749 * 155.09449 * 6 3 2 8 8 C 1.38751 * 120.05619 * 5.47581 * 7 6 3 9 9 C 1.38123 * 119.94353 * 180.02562 * 8 7 6 10 10 C 1.38288 * 120.05542 * 0.02562 * 9 8 7 11 11 C 1.38240 * 120.11263 * 359.96004 * 10 9 8 12 12 S 1.76201 * 119.97174 * 179.97438 * 11 10 9 13 13 O 1.42102 * 106.40066 * 336.46099 * 12 11 10 14 14 O 1.42098 * 106.40111 * 203.54030 * 12 11 10 15 15 N 1.65602 * 107.21756 * 90.00429 * 12 11 10 16 16 C 1.46491 * 120.00264 * 64.99410 * 15 12 11 17 17 H 1.08996 * 109.47260 * 25.00704 * 16 15 12 18 18 C 1.53004 * 109.47431 * 265.00392 * 16 15 12 19 19 C 1.50708 * 109.47100 * 145.00181 * 16 15 12 20 20 H 1.07997 * 119.99324 * 0.02562 * 19 16 15 21 21 C 1.37871 * 119.99927 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00092 * 0.02562 * 21 19 16 23 23 Si 1.86807 * 119.99707 * 180.02562 * 21 19 16 24 24 H 1.48499 * 109.46744 * 90.00163 * 23 21 19 25 25 H 1.48496 * 109.46800 * 209.99849 * 23 21 19 26 26 H 1.48493 * 109.46925 * 330.00136 * 23 21 19 27 27 C 1.38167 * 120.05341 * 0.27532 * 11 10 9 28 28 H 1.08997 * 109.47488 * 300.00069 * 1 2 3 29 29 H 1.09006 * 109.47293 * 59.99739 * 1 2 3 30 30 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47114 * 240.00426 * 2 1 3 32 32 H 1.08992 * 109.47325 * 120.00510 * 2 1 3 33 33 H 1.09010 * 109.47337 * 60.00135 * 5 3 2 34 34 H 1.08993 * 109.47285 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47413 * 300.00650 * 5 3 2 36 36 H 1.08003 * 120.03127 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.97077 * 179.97438 * 9 8 7 38 38 H 1.08006 * 119.94239 * 179.97438 * 10 9 8 39 39 H 0.97003 * 119.99605 * 244.99977 * 15 12 11 40 40 H 1.09002 * 109.46928 * 299.99968 * 18 16 15 41 41 H 1.08998 * 109.47165 * 59.99980 * 18 16 15 42 42 H 1.08998 * 109.46887 * 179.97438 * 18 16 15 43 43 H 0.97004 * 119.99480 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.02273 * 179.73787 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5647 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.5540 3.4360 -1.2009 8 6 1.9157 4.1451 -0.0644 9 6 1.8046 5.5217 -0.0463 10 6 1.3328 6.1932 -1.1593 11 6 0.9720 5.4891 -2.2929 12 16 0.3707 6.3484 -3.7088 13 8 -0.1443 7.5863 -3.2381 14 8 -0.4053 5.4136 -4.4458 15 7 1.6810 6.7154 -4.6525 16 6 2.4636 5.6415 -5.2691 17 1 1.8377 4.7568 -5.3859 18 6 3.6602 5.3054 -4.3768 19 6 2.9554 6.0907 -6.6210 20 1 2.7099 7.0777 -6.9842 21 6 3.7187 5.2417 -7.3939 22 7 4.0172 4.0396 -6.9517 23 14 4.3289 5.7989 -9.0693 24 1 5.6538 6.4531 -8.9210 25 1 4.4555 4.6223 -9.9663 26 1 3.3627 6.7641 -9.6521 27 6 1.0768 4.1115 -2.3144 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.9995 0.9054 -0.7162 34 1 3.9280 2.4720 0.1262 35 1 3.8532 0.9570 1.0570 36 1 2.2831 3.6211 0.8056 37 1 2.0856 6.0741 0.8382 38 1 1.2462 7.2697 -1.1430 39 1 1.9304 7.6417 -4.7970 40 1 4.2862 6.1901 -4.2601 41 1 3.3045 4.9804 -3.3991 42 1 4.2422 4.5060 -4.8354 43 1 4.5545 3.4425 -7.4954 44 1 0.7908 3.5616 -3.1988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594752096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:13 Heat of formation + Delta-G solvation = -99.360838 kcal Electronic energy + Delta-G solvation = -26641.461113 eV Core-core repulsion = 22878.928978 eV Total energy + Delta-G solvation = -3762.532135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.35732 -37.82828 -36.69628 -35.42607 -35.28257 -34.32892 -32.17348 -31.32500 -30.18512 -29.71808 -28.28150 -25.22773 -24.27564 -23.50482 -22.49737 -21.04707 -20.90553 -19.18893 -18.28063 -17.36996 -16.47960 -16.19126 -16.07125 -15.78875 -15.37687 -15.13584 -14.58895 -14.35891 -13.96405 -13.77414 -13.58381 -13.51750 -13.33469 -12.68703 -12.61389 -12.26128 -12.15194 -11.96366 -11.89839 -11.70936 -11.64937 -11.51042 -11.35465 -11.29000 -11.15147 -10.97403 -10.86396 -10.81456 -10.61880 -10.39356 -10.31978 -10.07817 -9.30839 -9.14040 -8.62582 -8.27407 -8.20532 -6.10715 -4.17932 0.81394 1.10602 1.44454 3.10595 3.27582 3.34548 3.38015 3.48712 3.82752 4.31082 4.38458 4.42046 4.63263 4.71953 4.76244 4.85395 4.96410 5.06562 5.17575 5.21893 5.28622 5.34702 5.38101 5.50814 5.55089 5.63221 5.71803 5.86873 5.92696 5.98103 6.08770 6.18423 6.28224 6.29825 6.35830 6.63790 6.78623 6.86576 7.02637 7.42540 7.58346 7.68064 7.87482 8.02601 8.28038 8.84520 9.47815 10.95364 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.004218 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.687814 B = 6636.561003 C = 7969.386144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C 0.079 3.921 4 H 0.071 0.929 5 C -0.183 4.183 6 O -0.302 6.302 7 C 0.113 3.887 8 C -0.165 4.165 9 C -0.105 4.105 10 C -0.060 4.060 11 C -0.627 4.627 12 S 2.689 3.311 13 O -0.980 6.980 14 O -0.958 6.958 15 N -1.097 6.097 16 C 0.268 3.732 17 H 0.052 0.948 18 C -0.159 4.159 19 C -0.521 4.521 20 H 0.065 0.935 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.901 3.099 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.042 4.042 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.410 0.590 40 H 0.033 0.967 41 H 0.014 0.986 42 H 0.093 0.907 43 H 0.264 0.736 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.019 -4.384 17.142 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C 0.023 3.977 4 H 0.089 0.911 5 C -0.240 4.240 6 O -0.216 6.216 7 C 0.067 3.933 8 C -0.184 4.184 9 C -0.124 4.124 10 C -0.080 4.080 11 C -0.711 4.711 12 S 2.776 3.224 13 O -0.970 6.970 14 O -0.948 6.948 15 N -0.858 5.858 16 C 0.164 3.836 17 H 0.070 0.930 18 C -0.218 4.218 19 C -0.561 4.561 20 H 0.083 0.917 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.729 3.271 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.062 4.062 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.244 0.756 40 H 0.052 0.948 41 H 0.033 0.967 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.873 -4.723 16.802 17.688 hybrid contribution 1.320 0.309 -0.154 1.364 sum -1.553 -4.414 16.648 17.294 Atomic orbital electron populations 1.21775 0.95090 1.01903 1.02493 1.21630 0.96892 0.93834 1.03270 1.22519 0.95118 0.94081 0.85979 0.91107 1.22401 0.95196 1.03339 1.03055 1.86181 1.83846 1.16278 1.35283 1.18963 0.96921 0.82844 0.94576 1.21492 1.03454 0.95489 0.97926 1.20995 0.99273 0.93586 0.98579 1.20775 0.95384 1.00145 0.91669 1.31155 1.15654 1.04782 1.19528 1.01955 0.73863 0.73243 0.73335 1.93522 1.78322 1.43062 1.82094 1.93578 1.67206 1.64589 1.69428 1.55514 1.50108 1.16756 1.63435 1.18643 0.88740 0.84616 0.91647 0.93033 1.22296 1.00747 1.02090 0.96685 1.21214 1.32838 1.01394 1.00605 0.91694 1.24908 0.95763 0.94796 0.98393 1.69870 1.38057 1.06981 1.37652 0.86447 0.79048 0.78244 0.83380 1.20654 1.21104 1.19753 1.20211 0.96152 0.92005 0.97801 0.92982 0.91642 0.92421 0.90461 0.90186 0.90977 0.91730 0.91144 0.85046 0.85238 0.84365 0.75619 0.94791 0.96704 0.88837 0.92607 0.83314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.81 37.16 0.36 -1.03 16 2 C -0.12 -1.04 5.64 -26.73 -0.15 -1.19 16 3 C 0.08 0.82 2.22 -26.73 -0.06 0.76 16 4 H 0.07 0.64 6.32 -51.93 -0.33 0.31 16 5 C -0.18 -1.70 9.17 37.16 0.34 -1.36 16 6 O -0.30 -4.33 9.34 -19.43 -0.18 -4.51 16 7 C 0.11 1.72 6.60 -39.22 -0.26 1.46 16 8 C -0.16 -2.09 8.24 -39.43 -0.32 -2.42 16 9 C -0.11 -1.32 10.04 -39.61 -0.40 -1.72 16 10 C -0.06 -0.89 9.52 -39.56 -0.38 -1.27 16 11 C -0.63 -10.79 5.05 -39.61 -0.20 -10.99 16 12 S 2.69 51.84 5.72 -107.50 -0.61 51.23 16 13 O -0.98 -19.34 17.28 -57.17 -0.99 -20.32 16 14 O -0.96 -21.41 16.61 -57.17 -0.95 -22.36 16 15 N -1.10 -22.25 5.46 -5.88 -0.03 -22.29 16 16 C 0.27 6.44 2.89 -69.08 -0.20 6.24 16 17 H 0.05 1.36 7.50 -51.93 -0.39 0.97 16 18 C -0.16 -3.63 9.29 37.16 0.35 -3.28 16 19 C -0.52 -13.72 8.76 -34.44 -0.30 -14.03 16 20 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -24.37 11.32 55.43 0.63 -23.74 16 23 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.04 -0.73 8.54 -39.43 -0.34 -1.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 34 H 0.06 0.65 6.90 -51.93 -0.36 0.29 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.13 1.29 5.43 -52.48 -0.28 1.00 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 38 H 0.14 1.82 7.61 -52.48 -0.40 1.42 16 39 H 0.41 7.48 8.83 -34.47 -0.30 7.18 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.01 0.29 6.18 -51.93 -0.32 -0.03 16 42 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.15 2.74 7.61 -52.48 -0.40 2.34 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -31.71 369.13 -9.68 -41.40 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.43 Total: 7.61 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -1.65 Total: -28.27 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: 0.60 Total: -46.03 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -2.12 Total: -47.20 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 51.84 SS G_CDS: -0.61 Total: 51.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.71 -9.68 -41.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594752096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.966 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds