Wall clock time and date at job start Tue Mar 31 2020 15:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 H 1.08998 * 109.47341 * 55.00437 * 3 2 1 5 5 C 1.52999 * 109.47066 * 174.99978 * 3 2 1 6 6 O 1.42900 * 109.47342 * 294.99672 * 3 2 1 7 7 C 1.35902 * 116.99749 * 155.09449 * 6 3 2 8 8 C 1.38751 * 120.05619 * 5.47581 * 7 6 3 9 9 C 1.38123 * 119.94353 * 180.02562 * 8 7 6 10 10 C 1.38288 * 120.05542 * 0.02562 * 9 8 7 11 11 C 1.38240 * 120.11263 * 359.96004 * 10 9 8 12 12 S 1.76201 * 119.97174 * 179.97438 * 11 10 9 13 13 O 1.42102 * 106.40066 * 336.46099 * 12 11 10 14 14 O 1.42098 * 106.40111 * 203.54030 * 12 11 10 15 15 N 1.65602 * 107.21756 * 90.00429 * 12 11 10 16 16 C 1.46491 * 120.00264 * 64.99410 * 15 12 11 17 17 H 1.08996 * 109.47260 * 25.00704 * 16 15 12 18 18 C 1.53004 * 109.47431 * 265.00392 * 16 15 12 19 19 C 1.50708 * 109.47100 * 145.00181 * 16 15 12 20 20 H 1.07997 * 119.99324 * 0.02562 * 19 16 15 21 21 C 1.37871 * 119.99927 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00092 * 0.02562 * 21 19 16 23 23 Si 1.86807 * 119.99707 * 180.02562 * 21 19 16 24 24 H 1.48499 * 109.46744 * 90.00163 * 23 21 19 25 25 H 1.48496 * 109.46800 * 209.99849 * 23 21 19 26 26 H 1.48493 * 109.46925 * 330.00136 * 23 21 19 27 27 C 1.38167 * 120.05341 * 0.27532 * 11 10 9 28 28 H 1.08997 * 109.47488 * 300.00069 * 1 2 3 29 29 H 1.09006 * 109.47293 * 59.99739 * 1 2 3 30 30 H 1.09004 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47114 * 240.00426 * 2 1 3 32 32 H 1.08992 * 109.47325 * 120.00510 * 2 1 3 33 33 H 1.09010 * 109.47337 * 60.00135 * 5 3 2 34 34 H 1.08993 * 109.47285 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47413 * 300.00650 * 5 3 2 36 36 H 1.08003 * 120.03127 * 359.97438 * 8 7 6 37 37 H 1.08003 * 119.97077 * 179.97438 * 9 8 7 38 38 H 1.08006 * 119.94239 * 179.97438 * 10 9 8 39 39 H 0.97003 * 119.99605 * 244.99977 * 15 12 11 40 40 H 1.09002 * 109.46928 * 299.99968 * 18 16 15 41 41 H 1.08998 * 109.47165 * 59.99980 * 18 16 15 42 42 H 1.08998 * 109.46887 * 179.97438 * 18 16 15 43 43 H 0.97004 * 119.99480 * 180.02562 * 22 21 19 44 44 H 1.08005 * 120.02273 * 179.73787 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5647 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.5540 3.4360 -1.2009 8 6 1.9157 4.1451 -0.0644 9 6 1.8046 5.5217 -0.0463 10 6 1.3328 6.1932 -1.1593 11 6 0.9720 5.4891 -2.2929 12 16 0.3707 6.3484 -3.7088 13 8 -0.1443 7.5863 -3.2381 14 8 -0.4053 5.4136 -4.4458 15 7 1.6810 6.7154 -4.6525 16 6 2.4636 5.6415 -5.2691 17 1 1.8377 4.7568 -5.3859 18 6 3.6602 5.3054 -4.3768 19 6 2.9554 6.0907 -6.6210 20 1 2.7099 7.0777 -6.9842 21 6 3.7187 5.2417 -7.3939 22 7 4.0172 4.0396 -6.9517 23 14 4.3289 5.7989 -9.0693 24 1 5.6538 6.4531 -8.9210 25 1 4.4555 4.6223 -9.9663 26 1 3.3627 6.7641 -9.6521 27 6 1.0768 4.1115 -2.3144 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.9995 0.9054 -0.7162 34 1 3.9280 2.4720 0.1262 35 1 3.8532 0.9570 1.0570 36 1 2.2831 3.6211 0.8056 37 1 2.0856 6.0741 0.8382 38 1 1.2462 7.2697 -1.1430 39 1 1.9304 7.6417 -4.7970 40 1 4.2862 6.1901 -4.2601 41 1 3.3045 4.9804 -3.3991 42 1 4.2422 4.5060 -4.8354 43 1 4.5545 3.4425 -7.4954 44 1 0.7908 3.5616 -3.1988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594752096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:13 Heat of formation + Delta-G solvation = -120.786161 kcal Electronic energy + Delta-G solvation = -26642.390185 eV Core-core repulsion = 22878.928978 eV Total energy + Delta-G solvation = -3763.461206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39905 -38.88138 -38.33763 -37.26722 -36.93723 -35.15608 -34.13427 -32.44249 -31.07917 -30.71588 -30.12940 -27.24668 -25.11761 -24.55061 -23.57194 -22.83589 -21.95576 -20.49757 -19.64522 -19.11723 -17.91292 -17.54418 -17.34097 -17.14623 -16.88608 -16.38196 -16.14700 -15.39619 -15.24715 -14.85591 -14.77669 -14.54370 -14.42577 -14.26457 -14.03677 -13.68649 -13.47621 -13.26769 -13.22219 -13.16041 -12.98535 -12.80989 -12.79707 -12.71834 -12.56172 -12.43094 -12.23818 -12.02671 -12.00407 -11.81205 -11.67197 -11.47153 -11.13490 -10.60201 -10.41673 -10.08651 -9.32854 -8.13895 -6.28456 -0.58358 -0.23842 0.31377 1.45133 1.46721 1.56790 2.07289 2.18850 2.43547 2.48185 2.81591 3.15800 3.43097 3.65120 3.76050 3.84667 3.95279 4.07690 4.08554 4.19947 4.39543 4.41287 4.52877 4.58161 4.65231 4.70902 4.81076 4.88827 4.93044 5.02045 5.02182 5.04567 5.13273 5.15202 5.16640 5.19865 5.25604 5.38514 5.58073 5.60674 5.74706 6.03275 6.11378 6.41272 6.42328 6.81900 7.40957 8.91511 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.004218 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.687814 B = 6636.561003 C = 7969.386144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.068 3.932 4 H 0.091 0.909 5 C -0.180 4.180 6 O -0.326 6.326 7 C 0.107 3.893 8 C -0.152 4.152 9 C -0.091 4.091 10 C -0.068 4.068 11 C -0.634 4.634 12 S 2.701 3.299 13 O -0.984 6.984 14 O -0.999 6.999 15 N -1.097 6.097 16 C 0.274 3.726 17 H 0.018 0.982 18 C -0.144 4.144 19 C -0.543 4.543 20 H 0.067 0.933 21 C 0.017 3.983 22 N -0.914 5.914 23 Si 0.964 3.036 24 H -0.271 1.271 25 H -0.285 1.285 26 H -0.270 1.270 27 C -0.077 4.077 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.155 0.845 39 H 0.419 0.581 40 H 0.041 0.959 41 H 0.032 0.968 42 H 0.067 0.933 43 H 0.265 0.735 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -3.847 20.085 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.109 0.891 5 C -0.237 4.237 6 O -0.241 6.241 7 C 0.061 3.939 8 C -0.170 4.170 9 C -0.110 4.110 10 C -0.088 4.088 11 C -0.723 4.723 12 S 2.794 3.206 13 O -0.974 6.974 14 O -0.989 6.989 15 N -0.858 5.858 16 C 0.168 3.832 17 H 0.036 0.964 18 C -0.204 4.204 19 C -0.582 4.582 20 H 0.085 0.915 21 C -0.183 4.183 22 N -0.553 5.553 23 Si 0.789 3.211 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.097 4.097 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.186 0.814 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.254 0.746 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.682 -4.149 19.712 20.214 hybrid contribution 0.915 0.063 -0.917 1.297 sum -0.767 -4.086 18.795 19.249 Atomic orbital electron populations 1.21777 0.95504 1.02425 1.01598 1.21691 0.96521 0.93128 1.04124 1.22912 0.96016 0.94698 0.85046 0.89114 1.22406 0.94182 1.03144 1.04005 1.86179 1.83942 1.16024 1.37912 1.19041 0.96645 0.83536 0.94677 1.21932 1.01477 0.95820 0.97793 1.21519 0.96855 0.93614 0.98996 1.21135 0.95085 1.01100 0.91470 1.30567 1.17975 1.04537 1.19236 1.01212 0.73203 0.72718 0.73511 1.93503 1.78381 1.43387 1.82138 1.93521 1.68621 1.65529 1.71265 1.55286 1.49715 1.16503 1.64297 1.18316 0.88766 0.84370 0.91720 0.96414 1.22084 0.99849 1.01412 0.97038 1.21595 1.33062 1.01658 1.01888 0.91469 1.25700 0.95958 0.94848 1.01812 1.70003 1.38517 1.07876 1.38866 0.85471 0.78769 0.77768 0.79103 1.19610 1.21034 1.19436 1.20085 0.98905 0.92405 0.98350 0.91837 0.94518 0.91262 0.91822 0.87029 0.92626 0.92235 0.88012 0.81365 0.80607 0.82702 0.74590 0.93983 0.94900 0.91407 0.92558 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.81 71.98 0.71 -1.93 16 2 C -0.12 -1.84 5.64 30.59 0.17 -1.67 16 3 C 0.07 1.27 2.22 30.59 0.07 1.33 16 4 H 0.09 1.30 6.32 -2.39 -0.02 1.29 16 5 C -0.18 -2.90 9.17 71.98 0.66 -2.24 16 6 O -0.33 -9.36 9.34 -92.45 -0.86 -10.23 16 7 C 0.11 3.22 6.60 22.51 0.15 3.37 16 8 C -0.15 -3.34 8.24 22.37 0.18 -3.16 16 9 C -0.09 -1.91 10.04 22.25 0.22 -1.68 16 10 C -0.07 -1.87 9.52 22.28 0.21 -1.65 16 11 C -0.63 -22.01 5.05 22.25 0.11 -21.90 16 12 S 2.70 107.74 5.72 -56.49 -0.32 107.42 16 13 O -0.98 -38.90 17.28 -128.00 -2.21 -41.11 16 14 O -1.00 -47.61 16.61 -128.00 -2.13 -49.74 16 15 N -1.10 -45.77 5.46 -172.52 -0.94 -46.71 16 16 C 0.27 13.68 2.89 44.25 0.13 13.81 16 17 H 0.02 1.02 7.50 -2.39 -0.02 1.00 16 18 C -0.14 -6.74 9.29 71.98 0.67 -6.07 16 19 C -0.54 -29.23 8.76 25.60 0.22 -29.01 16 20 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 21 C 0.02 0.92 5.30 84.65 0.45 1.37 16 22 N -0.91 -51.59 11.32 21.44 0.24 -51.34 16 23 Si 0.96 42.81 29.54 68.60 2.03 44.84 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C -0.08 -2.82 8.54 22.37 0.19 -2.62 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.04 0.82 7.82 -2.38 -0.02 0.80 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.06 1.02 6.90 -2.39 -0.02 1.00 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.17 2.42 5.43 -2.91 -0.02 2.41 16 37 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.16 3.65 7.61 -2.91 -0.02 3.63 16 39 H 0.42 15.50 8.83 -96.74 -0.85 14.64 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.03 1.37 6.18 -2.39 -0.01 1.35 16 42 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 43 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.12 4.91 7.61 -2.91 -0.02 4.89 16 Total: -1.00 -71.35 369.13 0.11 -71.24 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: 0.16 Total: 27.69 kcal Atomic # 6 Polarization: -56.21 SS G_CDS: 4.15 Total: -52.06 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -0.70 Total: -98.06 kcal Atomic # 8 Polarization: -95.87 SS G_CDS: -5.20 Total: -101.08 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: 107.74 SS G_CDS: -0.32 Total: 107.42 kcal Total: -71.35 0.11 -71.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594752096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.545 kcal (2) G-P(sol) polarization free energy of solvation -71.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds