Wall clock time and date at job start Tue Mar 31 2020 14:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46977 * 2 1 4 4 C 1.52997 * 109.47412 * 239.99786 * 2 1 3 5 5 C 1.53004 * 109.46923 * 119.99923 * 2 1 3 6 6 N 1.46499 * 109.47094 * 57.32548 * 5 2 1 7 7 C 1.46500 * 119.99895 * 280.20487 * 6 5 2 8 8 C 1.50698 * 109.46936 * 274.70066 * 7 6 5 9 9 H 1.08005 * 120.00173 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00300 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99561 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00514 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46904 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47528 * 119.99548 * 12 10 8 15 15 H 1.48499 * 109.47399 * 239.99542 * 12 10 8 16 16 S 1.65604 * 119.99806 * 100.20475 * 6 5 2 17 17 O 1.42096 * 106.40065 * 152.09271 * 16 6 5 18 18 O 1.42094 * 106.39921 * 19.17207 * 16 6 5 19 19 C 1.76196 * 107.21634 * 265.63484 * 16 6 5 20 20 C 1.38166 * 120.03216 * 115.00348 * 19 16 6 21 21 C 1.38241 * 120.06132 * 180.02562 * 20 19 16 22 22 C 1.38286 * 120.10713 * 359.97337 * 21 20 19 23 23 C 1.38126 * 120.06069 * 0.02562 * 22 21 20 24 24 C 1.38718 * 120.02604 * 294.95255 * 19 16 6 25 25 O 1.35892 * 120.05876 * 0.05106 * 24 19 16 26 26 H 1.08995 * 109.47289 * 291.44466 * 1 2 3 27 27 H 1.09004 * 109.47062 * 51.44331 * 1 2 3 28 28 H 1.09005 * 109.46889 * 171.43842 * 1 2 3 29 29 H 1.09002 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47517 * 299.99690 * 3 2 1 31 31 H 1.08999 * 109.47386 * 59.99945 * 3 2 1 32 32 H 1.08999 * 109.47041 * 313.07657 * 4 2 1 33 33 H 1.08999 * 109.46986 * 73.07242 * 4 2 1 34 34 H 1.09002 * 109.47270 * 193.07553 * 4 2 1 35 35 H 1.09002 * 109.46637 * 297.32857 * 5 2 1 36 36 H 1.08997 * 109.46819 * 177.32762 * 5 2 1 37 37 H 1.08990 * 109.47310 * 34.70261 * 7 6 5 38 38 H 1.09005 * 109.46968 * 154.70385 * 7 6 5 39 39 H 0.97001 * 120.00209 * 180.02562 * 11 10 8 40 40 H 1.08004 * 119.96687 * 359.96875 * 20 19 16 41 41 H 1.07998 * 119.94318 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.96985 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.02979 * 179.72787 * 23 22 21 44 44 H 0.96703 * 113.99811 * 269.95716 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4997 -2.0826 1.2820 7 6 0.1298 -2.3161 1.7458 8 6 0.1222 -2.4387 3.2478 9 1 1.0454 -2.3519 3.8014 10 6 -1.0633 -2.6628 3.9152 11 7 -2.1875 -2.7690 3.2410 12 14 -1.0730 -2.8142 5.7770 13 1 0.3105 -2.6576 6.2935 14 1 -1.9403 -1.7565 6.3552 15 1 -1.5967 -4.1492 6.1624 16 16 2.4375 -3.3575 0.7945 17 8 1.9721 -4.4942 1.5089 18 8 3.7842 -2.9066 0.8433 19 6 2.0732 -3.6536 -0.9038 20 6 3.0483 -3.4624 -1.8637 21 6 2.7629 -3.6941 -3.1964 22 6 1.5014 -4.1181 -3.5721 23 6 0.5230 -4.3107 -2.6164 24 6 0.8073 -4.0799 -1.2780 25 8 -0.1536 -4.2687 -0.3358 26 1 -0.3633 0.3757 0.9565 27 1 -0.3633 0.6406 -0.8037 28 1 -0.3633 -1.0163 -0.1530 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.4995 -1.6596 -1.3731 33 1 1.8791 -0.0910 -2.1238 34 1 3.1050 -0.9270 -1.1406 35 1 1.7162 -0.1804 2.1386 36 1 3.1289 -0.7629 1.2256 37 1 -0.5026 -1.4804 1.4463 38 1 -0.2514 -3.2368 1.3041 39 1 -3.0216 -2.9263 3.7104 40 1 4.0341 -3.1308 -1.5728 41 1 3.5264 -3.5436 -3.9452 42 1 1.2810 -4.2988 -4.6139 43 1 -0.4632 -4.6377 -2.9108 44 1 -0.1764 -5.1641 0.0288 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594755134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:12 Heat of formation + Delta-G solvation = -84.369896 kcal Electronic energy + Delta-G solvation = -28588.155012 eV Core-core repulsion = 24826.272934 eV Total energy + Delta-G solvation = -3761.882078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.72435 -37.94703 -37.00101 -36.13637 -35.14868 -33.92376 -32.09066 -31.31477 -29.71998 -27.75696 -26.91683 -26.59697 -24.88948 -23.17714 -22.59133 -22.02677 -18.95288 -18.64147 -17.88429 -17.21684 -16.70111 -16.30354 -15.90736 -15.41005 -15.11661 -14.63141 -14.48192 -14.26652 -14.09816 -13.85719 -13.58150 -12.90773 -12.58713 -12.54382 -12.37269 -12.28587 -11.97818 -11.82550 -11.58579 -11.41693 -11.37053 -11.19579 -11.11612 -11.06805 -10.97917 -10.85272 -10.67800 -10.45535 -10.20630 -10.17822 -9.87199 -9.75746 -9.46387 -9.19101 -8.70983 -8.28415 -7.84301 -5.95474 -3.96883 0.79554 1.15659 1.25644 3.35437 3.39327 3.43290 3.48948 3.77395 4.23544 4.34861 4.51949 4.72825 4.88240 5.05732 5.18279 5.20763 5.24541 5.28901 5.39305 5.50837 5.65647 5.76888 5.86268 5.87812 5.92499 6.02446 6.07888 6.11454 6.17546 6.25584 6.30034 6.30852 6.39540 6.48858 6.56379 6.69585 6.74387 6.75885 6.98601 7.50226 7.65150 7.77979 7.85247 8.02843 8.36414 9.05035 9.65512 11.12210 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.005993 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.565354 B = 4670.959900 C = 5319.266814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.161 4.161 5 C 0.130 3.870 6 N -0.968 5.968 7 C 0.231 3.769 8 C -0.521 4.521 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.284 1.284 16 S 2.688 3.312 17 O -0.946 6.946 18 O -0.982 6.982 19 C -0.701 4.701 20 C -0.008 4.008 21 C -0.158 4.158 22 C -0.058 4.058 23 C -0.171 4.171 24 C 0.214 3.786 25 O -0.480 6.480 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.260 0.740 40 H 0.141 0.859 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.134 0.866 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 1.273 -14.180 15.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.218 4.218 5 C 0.004 3.996 6 N -0.807 5.807 7 C 0.110 3.890 8 C -0.561 4.561 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.210 1.210 16 S 2.776 3.224 17 O -0.936 6.936 18 O -0.973 6.973 19 C -0.785 4.785 20 C -0.028 4.028 21 C -0.177 4.177 22 C -0.077 4.077 23 C -0.190 4.190 24 C 0.167 3.833 25 O -0.294 6.294 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.159 0.841 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.081 1.326 -13.762 15.534 hybrid contribution -0.487 -0.409 0.362 0.732 sum 6.594 0.917 -13.400 14.963 Atomic orbital electron populations 1.22069 0.93792 1.02619 1.01124 1.21006 0.96940 0.95080 0.95871 1.21808 1.00609 0.95491 1.01563 1.22382 1.00762 1.01410 0.97267 1.21356 0.97820 0.82903 0.97556 1.57242 1.28961 1.17659 1.76801 1.19805 0.75141 0.99810 0.94284 1.21599 0.93643 1.48551 0.92326 0.92482 1.24866 0.95484 0.95450 0.98171 1.69944 0.98229 1.50040 1.35208 0.86565 0.78018 0.77573 0.85993 1.19793 1.21194 1.21015 1.02175 0.72921 0.74029 0.73307 1.93569 1.81358 1.49644 1.69053 1.93465 1.34717 1.82134 1.86957 1.31758 1.00964 1.17556 1.28245 1.20840 0.97869 0.91828 0.92223 1.21194 0.97387 1.03009 0.96122 1.21245 0.92842 0.94361 0.99207 1.21527 1.00581 1.04278 0.92582 1.17984 0.85417 0.91020 0.88874 1.84975 1.52542 1.37282 1.54591 0.91945 0.94318 0.90912 0.92883 0.93003 0.92478 0.91486 0.93014 0.92781 0.89666 0.90326 0.92874 0.91501 0.93047 0.84131 0.85394 0.85441 0.84811 0.73081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 6.82 37.16 0.25 -2.07 16 2 C -0.09 -1.34 0.85 -154.51 -0.13 -1.47 16 3 C -0.14 -1.74 8.42 37.16 0.31 -1.43 16 4 C -0.16 -2.33 6.54 37.16 0.24 -2.08 16 5 C 0.13 2.33 4.76 -4.04 -0.02 2.31 16 6 N -0.97 -19.91 2.34 -115.67 -0.27 -20.18 16 7 C 0.23 5.55 4.01 -5.19 -0.02 5.53 16 8 C -0.52 -14.34 9.38 -34.44 -0.32 -14.66 16 9 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 12 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 16 S 2.69 53.75 4.91 -107.50 -0.53 53.22 16 17 O -0.95 -21.91 16.39 -62.49 -1.02 -22.93 16 18 O -0.98 -20.02 15.41 -57.17 -0.88 -20.90 16 19 C -0.70 -11.40 3.40 -39.43 -0.13 -11.54 16 20 C -0.01 -0.12 7.40 -39.61 -0.29 -0.41 16 21 C -0.16 -1.75 10.04 -39.56 -0.40 -2.15 16 22 C -0.06 -0.62 10.04 -39.60 -0.40 -1.02 16 23 C -0.17 -2.15 9.99 -39.43 -0.39 -2.55 16 24 C 0.21 3.32 6.15 -39.21 -0.24 3.08 16 25 O -0.48 -8.21 9.13 -29.12 -0.27 -8.47 16 26 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 27 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.07 1.37 5.93 -51.93 -0.31 1.06 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.04 4.19 -51.93 -0.22 0.82 16 33 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.05 0.75 7.44 -51.93 -0.39 0.37 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.08 1.34 6.77 -51.93 -0.35 0.99 16 37 H 0.05 1.30 4.49 -51.93 -0.23 1.07 16 38 H 0.07 1.67 4.47 -51.93 -0.23 1.44 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 40 H 0.14 1.81 7.33 -52.48 -0.38 1.43 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.41 5.89 9.01 45.56 0.41 6.30 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -32.59 351.84 -9.03 -41.62 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.44 Total: 7.26 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -1.64 Total: -26.83 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.47 Total: -45.01 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.17 Total: -52.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 53.75 SS G_CDS: -0.53 Total: 53.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.59 -9.03 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594755134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.750 kcal (2) G-P(sol) polarization free energy of solvation -32.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds