Wall clock time and date at job start Tue Mar 31 2020 14:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46977 * 2 1 4 4 C 1.52997 * 109.47412 * 239.99786 * 2 1 3 5 5 C 1.53004 * 109.46923 * 119.99923 * 2 1 3 6 6 N 1.46499 * 109.47094 * 57.32548 * 5 2 1 7 7 C 1.46500 * 119.99895 * 280.20487 * 6 5 2 8 8 C 1.50698 * 109.46936 * 274.70066 * 7 6 5 9 9 H 1.08005 * 120.00173 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00300 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99561 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00514 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46904 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47528 * 119.99548 * 12 10 8 15 15 H 1.48499 * 109.47399 * 239.99542 * 12 10 8 16 16 S 1.65604 * 119.99806 * 100.20475 * 6 5 2 17 17 O 1.42096 * 106.40065 * 152.09271 * 16 6 5 18 18 O 1.42094 * 106.39921 * 19.17207 * 16 6 5 19 19 C 1.76196 * 107.21634 * 265.63484 * 16 6 5 20 20 C 1.38166 * 120.03216 * 115.00348 * 19 16 6 21 21 C 1.38241 * 120.06132 * 180.02562 * 20 19 16 22 22 C 1.38286 * 120.10713 * 359.97337 * 21 20 19 23 23 C 1.38126 * 120.06069 * 0.02562 * 22 21 20 24 24 C 1.38718 * 120.02604 * 294.95255 * 19 16 6 25 25 O 1.35892 * 120.05876 * 0.05106 * 24 19 16 26 26 H 1.08995 * 109.47289 * 291.44466 * 1 2 3 27 27 H 1.09004 * 109.47062 * 51.44331 * 1 2 3 28 28 H 1.09005 * 109.46889 * 171.43842 * 1 2 3 29 29 H 1.09002 * 109.47261 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47517 * 299.99690 * 3 2 1 31 31 H 1.08999 * 109.47386 * 59.99945 * 3 2 1 32 32 H 1.08999 * 109.47041 * 313.07657 * 4 2 1 33 33 H 1.08999 * 109.46986 * 73.07242 * 4 2 1 34 34 H 1.09002 * 109.47270 * 193.07553 * 4 2 1 35 35 H 1.09002 * 109.46637 * 297.32857 * 5 2 1 36 36 H 1.08997 * 109.46819 * 177.32762 * 5 2 1 37 37 H 1.08990 * 109.47310 * 34.70261 * 7 6 5 38 38 H 1.09005 * 109.46968 * 154.70385 * 7 6 5 39 39 H 0.97001 * 120.00209 * 180.02562 * 11 10 8 40 40 H 1.08004 * 119.96687 * 359.96875 * 20 19 16 41 41 H 1.07998 * 119.94318 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.96985 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.02979 * 179.72787 * 23 22 21 44 44 H 0.96703 * 113.99811 * 269.95716 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.4997 -2.0826 1.2820 7 6 0.1298 -2.3161 1.7458 8 6 0.1222 -2.4387 3.2478 9 1 1.0454 -2.3519 3.8014 10 6 -1.0633 -2.6628 3.9152 11 7 -2.1875 -2.7690 3.2410 12 14 -1.0730 -2.8142 5.7770 13 1 0.3105 -2.6576 6.2935 14 1 -1.9403 -1.7565 6.3552 15 1 -1.5967 -4.1492 6.1624 16 16 2.4375 -3.3575 0.7945 17 8 1.9721 -4.4942 1.5089 18 8 3.7842 -2.9066 0.8433 19 6 2.0732 -3.6536 -0.9038 20 6 3.0483 -3.4624 -1.8637 21 6 2.7629 -3.6941 -3.1964 22 6 1.5014 -4.1181 -3.5721 23 6 0.5230 -4.3107 -2.6164 24 6 0.8073 -4.0799 -1.2780 25 8 -0.1536 -4.2687 -0.3358 26 1 -0.3633 0.3757 0.9565 27 1 -0.3633 0.6406 -0.8037 28 1 -0.3633 -1.0163 -0.1530 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.4995 -1.6596 -1.3731 33 1 1.8791 -0.0910 -2.1238 34 1 3.1050 -0.9270 -1.1406 35 1 1.7162 -0.1804 2.1386 36 1 3.1289 -0.7629 1.2256 37 1 -0.5026 -1.4804 1.4463 38 1 -0.2514 -3.2368 1.3041 39 1 -3.0216 -2.9263 3.7104 40 1 4.0341 -3.1308 -1.5728 41 1 3.5264 -3.5436 -3.9452 42 1 1.2810 -4.2988 -4.6139 43 1 -0.4632 -4.6377 -2.9108 44 1 -0.1764 -5.1641 0.0288 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594755134.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:12 Heat of formation + Delta-G solvation = -107.056364 kcal Electronic energy + Delta-G solvation = -28589.138772 eV Core-core repulsion = 24826.272934 eV Total energy + Delta-G solvation = -3762.865838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81604 -39.32488 -38.42903 -37.49446 -36.81197 -35.61807 -34.01840 -32.35513 -30.76220 -29.52732 -28.01864 -27.98977 -26.53551 -24.28122 -23.92597 -23.59169 -20.30151 -19.87741 -19.31160 -18.68832 -18.38797 -17.99509 -17.29353 -16.69520 -16.54932 -16.19690 -15.77059 -15.62961 -15.47167 -14.95909 -14.94535 -14.41225 -14.22821 -13.92478 -13.60919 -13.47765 -13.29785 -13.16159 -13.07011 -12.92993 -12.86925 -12.85474 -12.69796 -12.46376 -12.34410 -12.33908 -12.24814 -12.04163 -11.82142 -11.48875 -11.42174 -11.32143 -11.17332 -10.40442 -10.23965 -9.73021 -9.53118 -8.08868 -6.17056 -0.48828 -0.14948 0.26176 1.38604 1.41161 1.52179 2.12937 2.46040 2.51193 2.86870 3.10379 3.24593 3.45605 3.87866 3.94134 3.95443 4.08687 4.09351 4.32978 4.38300 4.43464 4.62511 4.66723 4.78061 4.82689 4.87569 4.98367 4.99892 5.05898 5.12459 5.14332 5.20016 5.25382 5.26852 5.36415 5.37476 5.54607 5.56696 5.63499 5.69794 5.80355 5.94425 6.09609 6.29418 6.64449 6.91185 7.47783 8.97267 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.005993 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.565354 B = 4670.959900 C = 5319.266814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 C -0.132 4.132 4 C -0.159 4.159 5 C 0.123 3.877 6 N -0.975 5.975 7 C 0.246 3.754 8 C -0.540 4.540 9 H 0.042 0.958 10 C 0.016 3.984 11 N -0.919 5.919 12 Si 0.945 3.055 13 H -0.275 1.275 14 H -0.274 1.274 15 H -0.280 1.280 16 S 2.689 3.311 17 O -0.992 6.992 18 O -0.995 6.995 19 C -0.708 4.708 20 C -0.018 4.018 21 C -0.145 4.145 22 C -0.041 4.041 23 C -0.171 4.171 24 C 0.190 3.810 25 O -0.503 6.503 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.263 0.737 40 H 0.146 0.854 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.151 0.849 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.702 1.900 -17.260 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.084 4.084 3 C -0.190 4.190 4 C -0.216 4.216 5 C -0.003 4.003 6 N -0.813 5.813 7 C 0.123 3.877 8 C -0.580 4.580 9 H 0.060 0.940 10 C -0.183 4.183 11 N -0.560 5.560 12 Si 0.771 3.229 13 H -0.200 1.200 14 H -0.199 1.199 15 H -0.206 1.206 16 S 2.783 3.217 17 O -0.983 6.983 18 O -0.985 6.985 19 C -0.798 4.798 20 C -0.038 4.038 21 C -0.163 4.163 22 C -0.059 4.059 23 C -0.191 4.191 24 C 0.144 3.856 25 O -0.318 6.318 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.163 0.837 41 H 0.186 0.814 42 H 0.190 0.810 43 H 0.169 0.831 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.963 1.982 -16.780 18.679 hybrid contribution -0.700 -0.643 1.158 1.498 sum 7.263 1.339 -15.622 17.280 Atomic orbital electron populations 1.21950 0.95020 1.01273 1.00670 1.20961 0.95784 0.96654 0.95036 1.21779 1.01410 0.93409 1.02414 1.22351 1.00743 1.01196 0.97297 1.21552 0.98167 0.81933 0.98680 1.57069 1.27447 1.18863 1.77929 1.19402 0.76911 0.99051 0.92307 1.21938 0.93161 1.48495 0.94419 0.94011 1.25561 0.95272 0.95312 1.02181 1.70028 0.98607 1.50679 1.36654 0.85707 0.77938 0.77876 0.81347 1.19973 1.19916 1.20584 1.01589 0.72394 0.73058 0.74669 1.93504 1.81870 1.51180 1.71717 1.93432 1.35102 1.82111 1.87888 1.31001 1.02513 1.20793 1.25454 1.21056 0.97376 0.92154 0.93185 1.21643 0.98533 1.00772 0.95373 1.21782 0.91752 0.91522 1.00802 1.21782 1.02136 1.03786 0.91352 1.18261 0.84971 0.92493 0.89882 1.84927 1.53311 1.37907 1.55610 0.94140 0.92053 0.93495 0.91612 0.91094 0.92725 0.92563 0.90797 0.92351 0.91177 0.89631 0.93593 0.92450 0.92800 0.83671 0.81388 0.81027 0.83112 0.72759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 6.82 71.98 0.49 -3.96 16 2 C -0.08 -2.48 0.85 -52.18 -0.04 -2.53 16 3 C -0.13 -3.11 8.42 71.98 0.61 -2.51 16 4 C -0.16 -4.28 6.54 71.98 0.47 -3.81 16 5 C 0.12 4.52 4.76 86.38 0.41 4.93 16 6 N -0.98 -42.01 2.34 -519.86 -1.22 -43.23 16 7 C 0.25 12.50 4.01 85.63 0.34 12.85 16 8 C -0.54 -31.16 9.38 25.60 0.24 -30.92 16 9 H 0.04 2.46 7.81 -2.91 -0.02 2.44 16 10 C 0.02 0.90 5.46 84.65 0.46 1.36 16 11 N -0.92 -54.08 13.29 21.45 0.28 -53.80 16 12 Si 0.95 45.69 29.54 68.60 2.03 47.71 16 13 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 15 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 16 S 2.69 111.76 4.91 -56.49 -0.28 111.49 16 17 O -0.99 -48.78 16.39 -122.92 -2.02 -50.79 16 18 O -0.99 -41.47 15.41 -128.00 -1.97 -43.45 16 19 C -0.71 -22.82 3.40 22.37 0.08 -22.75 16 20 C -0.02 -0.46 7.40 22.25 0.16 -0.30 16 21 C -0.14 -2.52 10.04 22.28 0.22 -2.30 16 22 C -0.04 -0.67 10.04 22.25 0.22 -0.44 16 23 C -0.17 -3.88 9.99 22.37 0.22 -3.66 16 24 C 0.19 5.88 6.15 22.51 0.14 6.01 16 25 O -0.50 -18.11 9.13 -83.05 -0.76 -18.87 16 26 H 0.04 1.50 7.56 -2.39 -0.02 1.48 16 27 H 0.06 1.74 8.13 -2.38 -0.02 1.72 16 28 H 0.05 1.82 5.93 -2.38 -0.01 1.80 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.67 4.19 -2.39 -0.01 1.66 16 33 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 34 H 0.06 1.51 7.44 -2.39 -0.02 1.49 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.09 2.97 6.77 -2.39 -0.02 2.96 16 37 H 0.05 2.39 4.49 -2.39 -0.01 2.38 16 38 H 0.06 3.05 4.47 -2.38 -0.01 3.04 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.15 3.45 7.33 -2.91 -0.02 3.43 16 41 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 44 H 0.41 13.01 9.01 -74.06 -0.67 12.34 16 Total: -1.00 -73.64 351.84 0.46 -73.19 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.35 Total: 25.76 kcal Atomic # 6 Polarization: -52.05 SS G_CDS: 4.03 Total: -48.02 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -0.93 Total: -97.03 kcal Atomic # 8 Polarization: -108.36 SS G_CDS: -4.75 Total: -113.11 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 111.76 SS G_CDS: -0.28 Total: 111.49 kcal Total: -73.64 0.46 -73.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594755134.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.868 kcal (2) G-P(sol) polarization free energy of solvation -73.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds