Wall clock time and date at job start Tue Mar 31 2020 14:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47434 * 2 1 4 4 C 1.53002 * 109.47151 * 119.99954 * 2 1 3 5 5 C 1.53003 * 109.46955 * 64.99905 * 4 2 1 6 6 N 1.46497 * 109.47368 * 180.02562 * 5 4 2 7 7 C 1.46497 * 119.99850 * 275.00355 * 6 5 4 8 8 C 1.50698 * 109.47228 * 274.99558 * 7 6 5 9 9 H 1.08005 * 119.99684 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00410 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00008 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99981 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46910 * 90.00237 * 12 10 8 14 14 H 1.48493 * 109.47433 * 210.00137 * 12 10 8 15 15 H 1.48500 * 109.47018 * 330.00676 * 12 10 8 16 16 S 1.65598 * 120.00104 * 94.99857 * 6 5 4 17 17 O 1.42091 * 106.40428 * 156.46350 * 16 6 5 18 18 O 1.42101 * 106.40272 * 23.54331 * 16 6 5 19 19 C 1.76209 * 107.21988 * 270.00394 * 16 6 5 20 20 C 1.38158 * 120.02768 * 114.99800 * 19 16 6 21 21 C 1.38250 * 120.05410 * 180.02562 * 20 19 16 22 22 C 1.38281 * 120.11168 * 359.97438 * 21 20 19 23 23 C 1.38125 * 120.05855 * 359.97438 * 22 21 20 24 24 C 1.38711 * 120.02444 * 294.95843 * 19 16 6 25 25 O 1.35901 * 120.05828 * 0.04004 * 24 19 16 26 26 H 1.09008 * 109.47158 * 59.99867 * 1 2 3 27 27 H 1.08998 * 109.47561 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47801 * 300.00398 * 1 2 3 29 29 H 1.08998 * 109.47078 * 239.99765 * 2 1 3 30 30 H 1.08997 * 109.47694 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47534 * 300.00175 * 3 2 1 32 32 H 1.09005 * 109.47251 * 59.99428 * 3 2 1 33 33 H 1.09001 * 109.47119 * 305.00652 * 4 2 1 34 34 H 1.08999 * 109.47447 * 184.99752 * 4 2 1 35 35 H 1.09001 * 109.47318 * 60.00236 * 5 4 2 36 36 H 1.09006 * 109.47192 * 300.00474 * 5 4 2 37 37 H 1.09001 * 109.47641 * 34.99778 * 7 6 5 38 38 H 1.09003 * 109.47327 * 155.00067 * 7 6 5 39 39 H 0.97001 * 119.99679 * 179.97438 * 11 10 8 40 40 H 1.08004 * 119.97750 * 359.97438 * 20 19 16 41 41 H 1.07999 * 119.94133 * 179.97438 * 21 20 19 42 42 H 1.07997 * 119.97275 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.03307 * 179.73079 * 23 22 21 44 44 H 0.96701 * 113.99785 * 269.95941 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6351 -2.1955 1.1880 6 7 2.1229 -2.8860 2.3844 7 6 3.4911 -3.4084 2.4220 8 6 3.5232 -4.7782 1.7946 9 1 2.6151 -5.2161 1.4070 10 6 4.7115 -5.4730 1.7163 11 7 4.7395 -6.6682 1.1683 12 14 6.2819 -4.7160 2.3872 13 1 6.4427 -5.0932 3.8145 14 1 7.4440 -5.2157 1.6093 15 1 6.2075 -3.2374 2.2713 16 16 1.1278 -3.0760 3.6943 17 8 1.6252 -4.1934 4.4174 18 8 -0.2029 -2.9988 3.2019 19 6 1.3568 -1.6701 4.7316 20 6 0.3154 -0.7860 4.9378 21 6 0.4946 0.3175 5.7511 22 6 1.7159 0.5390 6.3606 23 6 2.7600 -0.3425 6.1586 24 6 2.5827 -1.4507 5.3425 25 8 3.6087 -2.3189 5.1413 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3635 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6052 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 2.0698 -2.6550 0.3003 36 1 0.5488 -2.2724 1.1420 37 1 4.1507 -2.7399 1.8687 38 1 3.8263 -3.4750 3.4570 39 1 5.5756 -7.1568 1.1129 40 1 -0.6394 -0.9566 4.4626 41 1 -0.3206 1.0076 5.9107 42 1 1.8534 1.4015 6.9959 43 1 3.7149 -0.1668 6.6313 44 1 3.6427 -3.0427 5.7816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594759281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:16 Heat of formation + Delta-G solvation = -98.325493 kcal Electronic energy + Delta-G solvation = -27658.303265 eV Core-core repulsion = 23895.816026 eV Total energy + Delta-G solvation = -3762.487239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.75625 -37.33137 -37.11202 -36.26499 -35.24741 -34.88068 -32.34344 -31.34144 -29.85717 -29.26823 -27.08930 -26.86826 -23.46495 -22.95957 -22.72401 -21.59284 -19.82429 -18.91231 -18.15434 -17.33905 -16.94008 -16.59958 -16.05087 -15.59792 -15.30561 -14.94002 -14.71804 -14.21840 -14.12958 -13.98860 -13.57815 -13.45737 -12.80409 -12.65389 -12.50327 -12.42501 -12.29922 -12.18081 -11.91471 -11.66288 -11.54559 -11.48236 -11.29565 -11.16682 -11.10916 -10.99490 -10.67500 -10.48995 -10.34010 -10.22430 -10.11442 -10.04646 -9.47098 -9.41738 -8.85943 -8.51825 -8.02301 -6.02034 -3.99838 0.66392 1.02920 1.12208 3.25803 3.32528 3.38847 3.41292 3.63191 4.06674 4.27272 4.44725 4.60453 4.76721 4.91713 4.97762 5.04729 5.08216 5.13559 5.29073 5.38512 5.45049 5.53353 5.66102 5.72384 5.76631 5.80392 5.84659 5.93241 5.97999 5.99540 6.03921 6.09926 6.18345 6.28691 6.34604 6.44105 6.59605 6.60632 6.65953 6.97823 7.23235 7.47245 7.59133 7.67738 8.55953 9.03067 9.57832 11.11578 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.006337 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.757106 B = 4417.642301 C = 5574.464826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.145 4.145 4 C -0.136 4.136 5 C 0.118 3.882 6 N -0.967 5.967 7 C 0.223 3.777 8 C -0.528 4.528 9 H 0.077 0.923 10 C 0.073 3.927 11 N -0.898 5.898 12 Si 0.871 3.129 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.263 1.263 16 S 2.692 3.308 17 O -0.942 6.942 18 O -0.975 6.975 19 C -0.705 4.705 20 C -0.010 4.010 21 C -0.156 4.156 22 C -0.058 4.058 23 C -0.170 4.170 24 C 0.213 3.787 25 O -0.490 6.490 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.030 0.970 38 H 0.052 0.948 39 H 0.263 0.737 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 17.885 6.699 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.115 4.115 3 C -0.202 4.202 4 C -0.176 4.176 5 C -0.008 4.008 6 N -0.805 5.805 7 C 0.100 3.900 8 C -0.567 4.567 9 H 0.095 0.905 10 C -0.129 4.129 11 N -0.537 5.537 12 Si 0.698 3.302 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.188 1.188 16 S 2.779 3.221 17 O -0.932 6.932 18 O -0.965 6.965 19 C -0.789 4.789 20 C -0.029 4.029 21 C -0.175 4.175 22 C -0.076 4.076 23 C -0.189 4.189 24 C 0.167 3.833 25 O -0.305 6.305 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.537 17.398 6.379 19.650 hybrid contribution 1.258 0.718 0.953 1.734 sum -5.279 18.116 7.332 20.244 Atomic orbital electron populations 1.21927 0.95343 1.02368 1.01251 1.21065 0.95827 0.95886 0.98679 1.21823 1.00930 0.96224 1.01223 1.22139 1.01875 0.96153 0.97388 1.21379 0.99547 0.90585 0.89263 1.57063 1.27694 1.69984 1.25800 1.19640 0.77077 0.94590 0.98696 1.21426 0.96626 0.99680 1.38990 0.90526 1.24831 0.98671 0.94611 0.94828 1.69902 1.26943 1.12121 1.44713 0.86933 0.83425 0.80260 0.79619 1.19869 1.21300 1.18760 1.02092 0.72971 0.73686 0.73394 1.93577 1.80381 1.46697 1.72573 1.93486 1.35788 1.87223 1.79998 1.31841 1.00263 1.25171 1.21623 1.20894 0.97264 0.91343 0.93389 1.21253 0.98024 0.98676 0.99570 1.21272 0.92576 0.97471 0.96269 1.21518 1.00298 0.96418 1.00689 1.17938 0.84732 0.90102 0.90546 1.84869 1.47110 1.40895 1.57584 0.93062 0.91857 0.92886 0.90750 0.92802 0.92989 0.93050 0.92559 0.91253 0.89157 0.89938 0.95170 0.93005 0.92665 0.83863 0.85163 0.85237 0.84740 0.72945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.95 37.15 0.33 -1.39 16 2 C -0.10 -1.16 2.92 -90.62 -0.26 -1.43 16 3 C -0.14 -1.54 9.19 37.15 0.34 -1.20 16 4 C -0.14 -1.99 5.01 -26.73 -0.13 -2.13 16 5 C 0.12 2.07 5.43 -4.04 -0.02 2.05 16 6 N -0.97 -19.81 2.77 -115.66 -0.32 -20.13 16 7 C 0.22 5.24 3.97 -5.20 -0.02 5.22 16 8 C -0.53 -14.96 9.94 -34.44 -0.34 -15.30 16 9 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 12 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 16 S 2.69 53.19 5.25 -107.50 -0.56 52.63 16 17 O -0.94 -21.51 16.23 -62.49 -1.01 -22.52 16 18 O -0.97 -19.76 15.52 -57.18 -0.89 -20.65 16 19 C -0.71 -11.20 5.92 -39.44 -0.23 -11.44 16 20 C -0.01 -0.13 9.55 -39.61 -0.38 -0.51 16 21 C -0.16 -1.66 10.04 -39.56 -0.40 -2.05 16 22 C -0.06 -0.58 10.04 -39.61 -0.40 -0.98 16 23 C -0.17 -2.02 9.99 -39.43 -0.39 -2.41 16 24 C 0.21 3.17 6.65 -39.21 -0.26 2.91 16 25 O -0.49 -7.74 9.50 -29.15 -0.28 -8.02 16 26 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.64 8.11 -51.93 -0.42 1.21 16 36 H 0.08 1.38 5.34 -51.93 -0.28 1.10 16 37 H 0.03 0.70 7.17 -51.93 -0.37 0.33 16 38 H 0.05 1.20 4.28 -51.93 -0.22 0.98 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.14 1.77 7.33 -52.48 -0.38 1.39 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.41 5.23 9.01 45.56 0.41 5.64 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -34.66 367.98 -9.53 -44.19 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.85 Total: 5.89 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: -2.27 Total: -26.63 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 0.45 Total: -46.97 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -2.18 Total: -51.19 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 53.19 SS G_CDS: -0.56 Total: 52.63 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.66 -9.53 -44.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594759281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.135 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds