Wall clock time and date at job start Tue Mar 31 2020 14:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47434 * 2 1 4 4 C 1.53002 * 109.47151 * 119.99954 * 2 1 3 5 5 C 1.53003 * 109.46955 * 64.99905 * 4 2 1 6 6 N 1.46497 * 109.47368 * 180.02562 * 5 4 2 7 7 C 1.46497 * 119.99850 * 275.00355 * 6 5 4 8 8 C 1.50698 * 109.47228 * 274.99558 * 7 6 5 9 9 H 1.08005 * 119.99684 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00410 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00008 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99981 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46910 * 90.00237 * 12 10 8 14 14 H 1.48493 * 109.47433 * 210.00137 * 12 10 8 15 15 H 1.48500 * 109.47018 * 330.00676 * 12 10 8 16 16 S 1.65598 * 120.00104 * 94.99857 * 6 5 4 17 17 O 1.42091 * 106.40428 * 156.46350 * 16 6 5 18 18 O 1.42101 * 106.40272 * 23.54331 * 16 6 5 19 19 C 1.76209 * 107.21988 * 270.00394 * 16 6 5 20 20 C 1.38158 * 120.02768 * 114.99800 * 19 16 6 21 21 C 1.38250 * 120.05410 * 180.02562 * 20 19 16 22 22 C 1.38281 * 120.11168 * 359.97438 * 21 20 19 23 23 C 1.38125 * 120.05855 * 359.97438 * 22 21 20 24 24 C 1.38711 * 120.02444 * 294.95843 * 19 16 6 25 25 O 1.35901 * 120.05828 * 0.04004 * 24 19 16 26 26 H 1.09008 * 109.47158 * 59.99867 * 1 2 3 27 27 H 1.08998 * 109.47561 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47801 * 300.00398 * 1 2 3 29 29 H 1.08998 * 109.47078 * 239.99765 * 2 1 3 30 30 H 1.08997 * 109.47694 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47534 * 300.00175 * 3 2 1 32 32 H 1.09005 * 109.47251 * 59.99428 * 3 2 1 33 33 H 1.09001 * 109.47119 * 305.00652 * 4 2 1 34 34 H 1.08999 * 109.47447 * 184.99752 * 4 2 1 35 35 H 1.09001 * 109.47318 * 60.00236 * 5 4 2 36 36 H 1.09006 * 109.47192 * 300.00474 * 5 4 2 37 37 H 1.09001 * 109.47641 * 34.99778 * 7 6 5 38 38 H 1.09003 * 109.47327 * 155.00067 * 7 6 5 39 39 H 0.97001 * 119.99679 * 179.97438 * 11 10 8 40 40 H 1.08004 * 119.97750 * 359.97438 * 20 19 16 41 41 H 1.07999 * 119.94133 * 179.97438 * 21 20 19 42 42 H 1.07997 * 119.97275 * 180.02562 * 22 21 20 43 43 H 1.07994 * 120.03307 * 179.73079 * 23 22 21 44 44 H 0.96701 * 113.99785 * 269.95941 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6351 -2.1955 1.1880 6 7 2.1229 -2.8860 2.3844 7 6 3.4911 -3.4084 2.4220 8 6 3.5232 -4.7782 1.7946 9 1 2.6151 -5.2161 1.4070 10 6 4.7115 -5.4730 1.7163 11 7 4.7395 -6.6682 1.1683 12 14 6.2819 -4.7160 2.3872 13 1 6.4427 -5.0932 3.8145 14 1 7.4440 -5.2157 1.6093 15 1 6.2075 -3.2374 2.2713 16 16 1.1278 -3.0760 3.6943 17 8 1.6252 -4.1934 4.4174 18 8 -0.2029 -2.9988 3.2019 19 6 1.3568 -1.6701 4.7316 20 6 0.3154 -0.7860 4.9378 21 6 0.4946 0.3175 5.7511 22 6 1.7159 0.5390 6.3606 23 6 2.7600 -0.3425 6.1586 24 6 2.5827 -1.4507 5.3425 25 8 3.6087 -2.3189 5.1413 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3635 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6052 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 2.0698 -2.6550 0.3003 36 1 0.5488 -2.2724 1.1420 37 1 4.1507 -2.7399 1.8687 38 1 3.8263 -3.4750 3.4570 39 1 5.5756 -7.1568 1.1129 40 1 -0.6394 -0.9566 4.4626 41 1 -0.3206 1.0076 5.9107 42 1 1.8534 1.4015 6.9959 43 1 3.7149 -0.1668 6.6313 44 1 3.6427 -3.0427 5.7816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594759281.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:16 Heat of formation + Delta-G solvation = -123.391737 kcal Electronic energy + Delta-G solvation = -27659.390219 eV Core-core repulsion = 23895.816026 eV Total energy + Delta-G solvation = -3763.574192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.76338 -38.65859 -38.46191 -37.55115 -36.88836 -36.31839 -34.44793 -32.31603 -30.92009 -30.76720 -28.59244 -27.95282 -24.75946 -24.31853 -23.71618 -23.25652 -20.85866 -20.16165 -19.50621 -19.02980 -18.64182 -18.13228 -17.44483 -16.72380 -16.60118 -16.10329 -16.04070 -15.72744 -15.50049 -15.00990 -14.86784 -14.71422 -14.44946 -14.06446 -13.88779 -13.59848 -13.50916 -13.24777 -13.16628 -13.09125 -12.99313 -12.88628 -12.81880 -12.73792 -12.41275 -12.29359 -12.11977 -11.90321 -11.75599 -11.55596 -11.48975 -11.41286 -11.29666 -10.73311 -10.43047 -9.81159 -9.69438 -8.26110 -6.30037 -0.60229 -0.22435 0.19910 1.38147 1.40707 1.51376 2.01682 2.37630 2.44759 2.81308 3.01777 3.12766 3.35132 3.78563 3.88305 3.98854 4.05083 4.08777 4.17998 4.28180 4.37761 4.50650 4.58121 4.65132 4.71105 4.82046 4.83482 4.90384 5.00822 5.01156 5.07069 5.09035 5.17357 5.18912 5.21265 5.32389 5.36379 5.41895 5.52708 5.54827 5.56488 5.75325 5.81735 6.34527 6.56350 6.71673 7.31959 8.91554 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.006337 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.757106 B = 4417.642301 C = 5574.464826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.140 4.140 4 C -0.125 4.125 5 C 0.113 3.887 6 N -0.979 5.979 7 C 0.235 3.765 8 C -0.538 4.538 9 H 0.026 0.974 10 C 0.009 3.991 11 N -0.950 5.950 12 Si 0.942 3.058 13 H -0.262 1.262 14 H -0.282 1.282 15 H -0.237 1.237 16 S 2.690 3.310 17 O -0.988 6.988 18 O -0.993 6.993 19 C -0.714 4.714 20 C -0.024 4.024 21 C -0.145 4.145 22 C -0.040 4.040 23 C -0.168 4.168 24 C 0.192 3.808 25 O -0.509 6.509 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.267 0.733 40 H 0.145 0.855 41 H 0.169 0.831 42 H 0.176 0.824 43 H 0.159 0.841 44 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.671 22.618 8.785 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.114 4.114 3 C -0.197 4.197 4 C -0.164 4.164 5 C -0.012 4.012 6 N -0.816 5.816 7 C 0.111 3.889 8 C -0.577 4.577 9 H 0.045 0.955 10 C -0.188 4.188 11 N -0.590 5.590 12 Si 0.764 3.236 13 H -0.186 1.186 14 H -0.208 1.208 15 H -0.161 1.161 16 S 2.784 3.216 17 O -0.978 6.978 18 O -0.983 6.983 19 C -0.805 4.805 20 C -0.043 4.043 21 C -0.163 4.163 22 C -0.058 4.058 23 C -0.187 4.187 24 C 0.145 3.855 25 O -0.325 6.325 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.163 0.837 41 H 0.187 0.813 42 H 0.193 0.807 43 H 0.176 0.824 44 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -5.976 22.096 8.413 24.387 hybrid contribution 0.906 -0.704 0.362 1.203 sum -5.070 21.392 8.775 23.671 Atomic orbital electron populations 1.21925 0.94672 1.01770 1.02492 1.21080 0.96426 0.96860 0.97082 1.21778 1.00812 0.94774 1.02346 1.22039 1.01417 0.93890 0.99092 1.21532 0.99561 0.92449 0.87708 1.56988 1.26426 1.70731 1.27492 1.19333 0.79055 0.91934 0.98597 1.21736 0.94993 1.02059 1.38948 0.95533 1.25851 1.02930 0.94993 0.95057 1.70075 1.28231 1.14101 1.46628 0.85801 0.77932 0.80682 0.79176 1.18645 1.20754 1.16057 1.01537 0.72302 0.74377 0.73343 1.93512 1.80854 1.50204 1.73233 1.93446 1.36436 1.87913 1.80554 1.31044 1.02361 1.24364 1.22682 1.21109 0.96596 0.92126 0.94472 1.21698 0.99533 0.97572 0.97531 1.21846 0.91264 0.97666 0.95004 1.21827 1.02066 0.95186 0.99594 1.18220 0.84108 0.91217 0.91913 1.84800 1.47557 1.41580 1.58532 0.91267 0.93406 0.92200 0.91219 0.92974 0.91449 0.92344 0.91795 0.91989 0.90937 0.89704 0.94248 0.92119 0.92451 0.83706 0.81317 0.80696 0.82379 0.72181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.95 71.98 0.64 -2.60 16 2 C -0.10 -2.21 2.92 -10.80 -0.03 -2.24 16 3 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 4 C -0.13 -3.61 5.01 30.60 0.15 -3.45 16 5 C 0.11 4.13 5.43 86.38 0.47 4.60 16 6 N -0.98 -41.83 2.77 -519.84 -1.44 -43.27 16 7 C 0.24 11.36 3.97 85.63 0.34 11.70 16 8 C -0.54 -32.19 9.94 25.60 0.25 -31.94 16 9 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 10 C 0.01 0.54 5.47 84.65 0.46 1.00 16 11 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 12 Si 0.94 44.13 27.47 68.60 1.88 46.02 16 13 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 15 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 16 S 2.69 110.79 5.25 -56.49 -0.30 110.49 16 17 O -0.99 -47.73 16.23 -122.92 -1.99 -49.72 16 18 O -0.99 -42.12 15.52 -128.00 -1.99 -44.11 16 19 C -0.71 -22.11 5.92 22.36 0.13 -21.97 16 20 C -0.02 -0.57 9.55 22.25 0.21 -0.36 16 21 C -0.14 -2.35 10.04 22.28 0.22 -2.12 16 22 C -0.04 -0.57 10.04 22.25 0.22 -0.35 16 23 C -0.17 -3.28 9.99 22.37 0.22 -3.06 16 24 C 0.19 5.37 6.65 22.51 0.15 5.52 16 25 O -0.51 -15.72 9.50 -83.14 -0.79 -16.51 16 26 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.05 1.16 6.57 -2.39 -0.02 1.14 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.83 8.11 -2.39 -0.02 2.81 16 36 H 0.08 3.01 5.34 -2.38 -0.01 3.00 16 37 H 0.04 1.82 7.17 -2.39 -0.02 1.81 16 38 H 0.06 2.85 4.28 -2.39 -0.01 2.84 16 39 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 40 H 0.15 3.39 7.33 -2.91 -0.02 3.37 16 41 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 43 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 44 H 0.42 10.70 9.01 -74.06 -0.67 10.03 16 Total: -1.00 -80.63 367.98 0.08 -80.55 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.28 Total: 24.61 kcal Atomic # 6 Polarization: -51.34 SS G_CDS: 4.12 Total: -47.22 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -1.14 Total: -104.11 kcal Atomic # 8 Polarization: -105.57 SS G_CDS: -4.77 Total: -110.34 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Atomic # 16 Polarization: 110.79 SS G_CDS: -0.30 Total: 110.49 kcal Total: -80.63 0.08 -80.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594759281.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.842 kcal (2) G-P(sol) polarization free energy of solvation -80.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds