Wall clock time and date at job start Tue Mar 31 2020 15:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 H 1.09006 * 109.47078 * 55.00148 * 3 2 1 5 5 C 1.53003 * 109.47122 * 174.99529 * 3 2 1 6 6 O 1.42892 * 109.47013 * 295.00268 * 3 2 1 7 7 C 1.35898 * 117.00047 * 155.07871 * 6 3 2 8 8 C 1.38755 * 120.05803 * 5.43167 * 7 6 3 9 9 C 1.38117 * 119.94942 * 179.97438 * 8 7 6 10 10 C 1.38289 * 120.05286 * 0.25958 * 9 8 7 11 11 C 1.38245 * 120.11238 * 359.48451 * 10 9 8 12 12 S 1.76201 * 119.97271 * 180.25912 * 11 10 9 13 13 O 1.42097 * 106.40141 * 23.79697 * 12 11 10 14 14 O 1.42099 * 106.39911 * 156.71464 * 12 11 10 15 15 N 1.65598 * 107.21756 * 270.25723 * 12 11 10 16 16 C 1.46499 * 120.00200 * 64.99956 * 15 12 11 17 17 C 1.52998 * 109.47080 * 165.00271 * 16 15 12 18 18 C 1.50697 * 109.47243 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00310 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00059 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00023 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47239 * 89.99665 * 22 20 18 24 24 H 1.48491 * 109.47285 * 209.99874 * 22 20 18 25 25 H 1.48500 * 109.47068 * 329.99909 * 22 20 18 26 26 C 1.38161 * 120.05222 * 0.51464 * 11 10 9 27 27 H 1.08994 * 109.47026 * 60.00293 * 1 2 3 28 28 H 1.09003 * 109.46744 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47030 * 299.99992 * 1 2 3 30 30 H 1.08990 * 109.47259 * 240.00017 * 2 1 3 31 31 H 1.09003 * 109.46958 * 119.99983 * 2 1 3 32 32 H 1.08997 * 109.47063 * 300.00606 * 5 3 2 33 33 H 1.09006 * 109.46638 * 60.00350 * 5 3 2 34 34 H 1.09003 * 109.46933 * 179.97438 * 5 3 2 35 35 H 1.08008 * 120.02271 * 359.95684 * 8 7 6 36 36 H 1.08006 * 119.97329 * 179.97438 * 9 8 7 37 37 H 1.08002 * 119.94462 * 179.74719 * 10 9 8 38 38 H 0.97001 * 120.00024 * 245.00604 * 15 12 11 39 39 H 1.09000 * 109.47022 * 284.99799 * 16 15 12 40 40 H 1.09000 * 109.47291 * 45.00097 * 16 15 12 41 41 H 1.08999 * 109.47330 * 299.99679 * 17 16 15 42 42 H 1.09000 * 109.47200 * 59.99771 * 17 16 15 43 43 H 0.97005 * 119.99992 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.02790 * 179.77022 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 6 3.5648 1.4444 0.1258 6 8 1.6619 2.0814 -1.2210 7 6 1.5536 3.4359 -1.2008 8 6 1.9142 4.1451 -0.0640 9 6 1.8037 5.5217 -0.0461 10 6 1.3291 6.1929 -1.1581 11 6 0.9741 5.4892 -2.2939 12 16 0.3761 6.3487 -3.7110 13 8 0.8800 7.6741 -3.6187 14 8 0.6178 5.5012 -4.8258 15 7 -1.2688 6.4620 -3.5577 16 6 -1.8504 7.2493 -2.4677 17 6 -3.3312 7.5039 -2.7562 18 6 -3.9296 8.3132 -1.6347 19 1 -3.3153 8.6153 -0.7994 20 6 -5.2614 8.6679 -1.6748 21 7 -5.7835 9.3747 -0.6962 22 14 -6.3241 8.1447 -3.1192 23 1 -6.9405 6.8254 -2.8280 24 1 -7.3924 9.1526 -3.3385 25 1 -5.4843 8.0401 -4.3394 26 6 1.0827 4.1120 -2.3167 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8531 0.9571 1.0572 33 1 3.9995 0.9054 -0.7160 34 1 3.9281 2.4721 0.1254 35 1 2.2808 3.6209 0.8063 36 1 2.0839 6.0741 0.8387 37 1 1.2395 7.2691 -1.1408 38 1 -1.8473 6.0071 -4.1896 39 1 -1.7519 6.7010 -1.5308 40 1 -1.3267 8.2019 -2.3880 41 1 -3.4298 8.0522 -3.6931 42 1 -3.8549 6.5513 -2.8359 43 1 -6.7204 9.6245 -0.7247 44 1 0.8018 3.5623 -3.2029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594773977.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:54 Heat of formation + Delta-G solvation = -102.341397 kcal Electronic energy + Delta-G solvation = -25668.932250 eV Core-core repulsion = 21906.270869 eV Total energy + Delta-G solvation = -3762.661381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61144 -38.07181 -37.08419 -35.69721 -35.54757 -34.53992 -32.69946 -31.58574 -30.40122 -29.96741 -29.70201 -24.58279 -24.48895 -23.76638 -22.74599 -21.27934 -20.89853 -19.47869 -18.71012 -17.32737 -16.82207 -16.71637 -16.30434 -16.24289 -15.69960 -15.39587 -14.64714 -14.31748 -14.23518 -14.16380 -13.98988 -13.93019 -13.74858 -13.57585 -12.85227 -12.64722 -12.49267 -12.15681 -12.13163 -12.10361 -11.95583 -11.87820 -11.68202 -11.61423 -11.46457 -11.34084 -11.11249 -11.01143 -10.74912 -10.46987 -10.06824 -9.89864 -9.55122 -9.34605 -9.02743 -8.60941 -8.47766 -6.11793 -4.11765 0.45600 0.72840 1.18541 2.84016 3.11841 3.26716 3.35158 3.37715 3.44244 3.90625 4.21725 4.38827 4.42179 4.48197 4.51761 4.58215 4.70704 4.87467 4.96964 5.04802 5.13431 5.15500 5.22168 5.25833 5.29910 5.44269 5.58017 5.61910 5.64726 5.67208 5.74777 5.88434 5.95240 6.01685 6.05827 6.08030 6.26272 6.39164 6.50729 7.12109 7.14603 7.21787 7.29740 7.68251 8.41888 8.91116 9.49083 11.01056 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.003211 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.621303 B = 8717.123102 C = 9674.108952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.075 0.925 5 C -0.182 4.182 6 O -0.305 6.305 7 C 0.110 3.890 8 C -0.160 4.160 9 C -0.099 4.099 10 C -0.055 4.055 11 C -0.634 4.634 12 S 2.695 3.305 13 O -0.954 6.954 14 O -0.967 6.967 15 N -1.113 6.113 16 C 0.126 3.874 17 C -0.018 4.018 18 C -0.524 4.524 19 H 0.076 0.924 20 C 0.070 3.930 21 N -0.899 5.899 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.264 1.264 26 C -0.052 4.052 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.145 0.855 38 H 0.416 0.584 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.019 0.981 43 H 0.265 0.735 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.324 -17.173 2.519 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C 0.022 3.978 4 H 0.092 0.908 5 C -0.239 4.239 6 O -0.219 6.219 7 C 0.064 3.936 8 C -0.178 4.178 9 C -0.118 4.118 10 C -0.074 4.074 11 C -0.719 4.719 12 S 2.783 3.217 13 O -0.944 6.944 14 O -0.957 6.957 15 N -0.875 5.875 16 C 0.001 3.999 17 C -0.057 4.057 18 C -0.563 4.563 19 H 0.094 0.906 20 C -0.132 4.132 21 N -0.537 5.537 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.072 4.072 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.163 0.837 38 H 0.251 0.749 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 17.764 -16.815 1.902 24.534 hybrid contribution -0.909 -0.767 0.156 1.200 sum 16.855 -17.582 2.059 24.443 Atomic orbital electron populations 1.21781 0.94856 1.02056 1.02677 1.21631 0.97081 0.93599 1.03219 1.22566 0.95047 0.94238 0.85983 0.90759 1.22403 0.95187 1.03204 1.03143 1.86137 1.83959 1.16218 1.35614 1.18961 0.97187 0.82875 0.94588 1.21580 1.02798 0.95546 0.97918 1.21108 0.98479 0.93575 0.98646 1.20939 0.94654 1.00663 0.91192 1.31022 1.15785 1.04834 1.20291 1.01861 0.72855 0.73823 0.73197 1.93591 1.78921 1.35467 1.86452 1.93566 1.84573 1.68749 1.48836 1.55522 1.24737 1.65201 1.42010 1.21481 0.97872 0.93847 0.86713 1.19761 0.90169 0.97252 0.98512 1.20949 0.95597 1.33661 1.06076 0.90598 1.24988 0.97878 0.94473 0.95897 1.69902 1.13749 1.37960 1.32134 0.86780 0.80349 0.78519 0.83654 1.20252 1.21287 1.18866 1.20101 0.97655 0.91797 0.97664 0.91746 0.92321 0.92692 0.90680 0.90031 0.90880 0.91234 0.91792 0.84756 0.84682 0.83731 0.74905 0.92290 0.90589 0.95535 0.96243 0.92565 0.83572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 9.81 37.16 0.36 -0.82 16 2 C -0.12 -0.78 5.64 -26.73 -0.15 -0.94 16 3 C 0.08 0.61 2.22 -26.73 -0.06 0.55 16 4 H 0.07 0.55 6.31 -51.93 -0.33 0.22 16 5 C -0.18 -1.18 9.17 37.16 0.34 -0.84 16 6 O -0.31 -3.38 9.33 -19.42 -0.18 -3.56 16 7 C 0.11 1.33 6.60 -39.21 -0.26 1.07 16 8 C -0.16 -1.68 8.24 -39.43 -0.32 -2.01 16 9 C -0.10 -1.09 10.04 -39.61 -0.40 -1.48 16 10 C -0.06 -0.71 9.52 -39.56 -0.38 -1.09 16 11 C -0.63 -8.84 5.94 -39.61 -0.24 -9.08 16 12 S 2.69 41.43 5.74 -107.50 -0.62 40.81 16 13 O -0.95 -17.05 16.75 -57.17 -0.96 -18.01 16 14 O -0.97 -16.24 17.28 -57.17 -0.99 -17.23 16 15 N -1.11 -17.44 6.00 -10.61 -0.06 -17.50 16 16 C 0.13 2.33 6.16 -4.04 -0.02 2.31 16 17 C -0.02 -0.40 4.18 -27.89 -0.12 -0.52 16 18 C -0.52 -14.27 9.66 -34.44 -0.33 -14.60 16 19 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 22 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 26 C -0.05 -0.70 9.46 -39.43 -0.37 -1.07 16 27 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.44 6.91 -51.93 -0.36 0.09 16 35 H 0.13 1.06 5.43 -52.48 -0.29 0.77 16 36 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.14 1.77 7.62 -52.49 -0.40 1.37 16 38 H 0.42 5.81 8.65 -34.47 -0.30 5.51 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.43 7.75 -51.93 -0.40 1.03 16 41 H 0.03 0.60 7.20 -51.93 -0.37 0.22 16 42 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 44 H 0.15 1.85 7.62 -52.49 -0.40 1.45 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -33.80 373.64 -9.73 -43.53 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.61 Total: 2.79 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -2.04 Total: -26.64 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.71 Total: -43.67 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -2.13 Total: -38.80 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 41.43 SS G_CDS: -0.62 Total: 40.81 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.80 -9.73 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594773977.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.811 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds